Ufer029131.1
Basic Information
- Insect
- Udea ferrugalis
- Gene Symbol
- -
- Assembly
- GCA_950022985.1
- Location
- OX465545.1:1782250-1810286[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.73 69 5.0 0.2 1 17 51 67 51 68 0.91 2 18 1.4 1.3e+02 4.2 0.2 2 23 165 186 164 186 0.96 3 18 0.019 1.8 10.0 1.3 1 23 190 212 190 212 0.96 4 18 0.0006 0.057 14.8 0.6 1 23 217 240 217 240 0.97 5 18 0.2 19 6.8 0.3 1 23 246 269 246 269 0.86 6 18 2 1.9e+02 3.7 0.2 1 11 276 286 276 291 0.84 7 18 0.2 19 6.8 0.3 1 23 294 317 294 317 0.86 8 18 6.2 5.8e+02 2.1 0.3 1 10 324 333 324 333 0.96 9 18 0.2 19 6.8 0.3 1 23 433 456 433 456 0.86 10 18 0.2 19 6.8 0.3 1 23 474 497 474 497 0.86 11 18 6.2 5.8e+02 2.1 0.3 1 10 504 513 504 513 0.96 12 18 0.2 19 6.8 0.3 1 23 613 636 613 636 0.86 13 18 0.2 19 6.8 0.3 1 23 654 677 654 677 0.86 14 18 6.2 5.8e+02 2.1 0.3 1 10 684 693 684 693 0.96 15 18 0.2 19 6.8 0.3 1 23 793 816 793 816 0.86 16 18 0.2 19 6.8 0.3 1 23 834 857 834 857 0.86 17 18 0.022 2.1 9.8 0.3 1 23 864 887 864 887 0.96 18 18 0.13 13 7.4 0.0 3 23 895 915 895 915 0.92
Sequence Information
- Coding Sequence
- ATGTCGATAGATACTTATTTCTGTTTCTGCTGCCTCTCCACAAATGATCTAACACATATTTACGATAACGATGCCGATGTTAATTACGGGAAGGAACtatttcaactttttaatttaaatATTTCACGCTCAGATTATGAGGATGATGGATATATTTGTGGTGACTGTACAAGGAGCCTGAAGAATGCAACACAGTTCAAAGATCAAGTGTTTCACGTCCTCAATGTTTTGCAGGGTAACGGCTTAATTGAAATAACAAATGAAGATCAGCAAGTGATCGTAAAGAAAGTAGTCAATGAAAACATAGAGGATGAACAGAAATTCGATTATAGCGATGTGAAAAGAATTCTGGGGCCAGAACCTTCTGAAAAGCAAATGCTCATTGAAAAAACCAATTTACTACCACAGCTAGTGCCAAAGATAGAAAGGGACAAAGCTACAGATGAAAGAGAAGTGAAACATGTCACCCGTTATGAAGTGACAGAGGATCTGAAGTGTGAGGTGTGTGCTGAAGAGCTTCCCAATGCGTATGTGTACCATTCACATATGAACCAGCATTTTCCTAACCATATTTGTGAGGCATGTGGAAAAGGGTTCTTGACTGTGAAACGCCTGAAGCGCCATATGCAGTCACATAGGACCGGCATGTTTCCGTGTGACATTTGCGACGCCGAGTTCACTAACTACAACTCAGTCAACTCACATAGACGCCGCAAGCACGGCTCCGTGTCGATATACGCGTGTCCTCACTGCCCGGTGCGCTTTGATACGCTCACTCGGCGCGCGCTTCACCTGGCGCGGGAGCACGCGCGCCCGCCCCCCTGCTACAGGTGCGCCCTCTGCGGGAAAAGTCGCCGCAAGCACGGCTCGGTGTCGATATACGCGTGTCCTCACTGCCCGGTGCGCTTCGATACGCTCACTCGGCGCGCGCTCCACCTGGCGCGGGAGCACGCGCGCCCGCCCCACTGCTACCGGTGCGCCCTCTGCGAGAAGCGGTTCCTACTGGCCGGTGACAGGATCAGCTACTCCAACTTATTATGCAAGGGAAGATCGAAGGACGAAGAAAACCCGGAAGAAGACACGCCGCAAGCACGGCTCGGTGTCGATATACGCGTGTCCTCACTGCCCGGTGCGCTTCGATACGCTCACTCGGCGCGCGCTCCACCTGGCGCGGGAGCACGCGCGCCCGCCCCACTGCTACCGGTGCGCCCTCCAGGGAAAAGGTTCCTACTGGCCGGGCTATTTATTATCCCTCGCATTGGTCCCAAACGCCGCAAGCACGGCTCGGTGTCGATATACGCGTGTCCTCACTGCCCGGTGCGCTTTGACACGCTCACTCGGCGCGCGCTCCACCTGGCGCGGGAGCACGCGCGCCCGCCCCACTGCTACCGACGCCGCAAGCACGGTTCCGTGTCGATATACGCGTGTCCTCACTGCCCGGTGCGCTTCGATACGCTCACTCGGCGCGCGCTCCACCTGGCGCGGGAGCACGCGCGCCCGCCCCACTGCTACCGGTGCGCCCTCTGCGAGAAGCGGTTCCTACTGGCCGGTGACAGGATCAGCTACTCCAACTTATTATGCAAGGGAAGATCGAAGGACGAAGAAAACCCGGAAGAAGACACGCCGCAAGCACGGCTCGGTGTCGATATACGCGTGTCCTCACTGCCCGGTGCGCTTCGATACGCTCACTCGGCGCGCGCTCCACCTGGCGCGGGAGCACGCGCGCCCGCCCCACTGCTACCGGTGCGCCCTCCAGGGAAAAGGTTCCTACTGGCCGGGCTATTTATTATCCCTCGCATTGGTCCCAAACGCCGCAAGCACGGCTCGGTGTCGATATACGCGTGTCCTCACTGCCCGGTGCGCTTTGACACGCTCACTCGGCGCGCGCTCCACCTGGCGCGGGAGCACGCGCGCCCGCCCCACTGCTACCGACGCCGCAAGCACGGTTCCGTGTCGATATACGCGTGTCCTCACTGCCCGGTGCGCTTCGATACGCTCACTCGGCGCGCGCTCCACCTGGCGCGGGAGCACGCGCGCCCGCCCCACTGCTACCGGTGCGCCCTCTGCGAGAAGCGGTTCCTACTGGCCGGTGACAGGATCAGCTACTCCAACTTATTATGCAAGGGAAGATCGAAGGACGAAGAAAACCCGGAAGAAGACACGCCGCAAGCACGGCTCGGTGTCGATATACGCGTGTCCTCACTGCCCGGTGCGCTTCGATACGCTCACTCGGCGCGCGCTCCACCTGGCGCGGGAGCACGCGCGCCCGCCCCACTGCTACCGGTGCGCCCTCCAGGGAAAAGGTTCCTACTGGCCGGGCTATTTATTATCCCTCGCATTGGTCCCAAACGCCGCAAGCACGGCTCGGTGTCGATATACGCGTGTCCTCACTGCCCGGTGCGCTTTGACACGCTCACTCGGCGCGCGCTCCACCTGGCGCGGGAGCACGCGCGCCCGCCCCACTGCTACCGACGCCGCAAGCACGGTTCCGTGTCGATATACGCGTGTCCTCACTGCCCGGTGCGCTTCGATACGCTCACTCGGCGCGCGCTCCACCTGGCGCGGGAGCACGCGCGCCCGCCCCACTGCTACCGGTGCGCCCTCTGCGAGAAGCGGTTCCTACTGGCCGGTAACCTAAGCTCGCATATGCTGAACACCCACCAGAAGGTGAAGCGGCACTGGTGCGGGGAGTGCGGGGCGGGGTTCTCTCTCCGCCAGGAGCTGGAGGCGCACTCAGCTGCCCACACCGACCAGTACTTGTACCATTGTCATCACTGTCCTAAGAGGTGA
- Protein Sequence
- MSIDTYFCFCCLSTNDLTHIYDNDADVNYGKELFQLFNLNISRSDYEDDGYICGDCTRSLKNATQFKDQVFHVLNVLQGNGLIEITNEDQQVIVKKVVNENIEDEQKFDYSDVKRILGPEPSEKQMLIEKTNLLPQLVPKIERDKATDEREVKHVTRYEVTEDLKCEVCAEELPNAYVYHSHMNQHFPNHICEACGKGFLTVKRLKRHMQSHRTGMFPCDICDAEFTNYNSVNSHRRRKHGSVSIYACPHCPVRFDTLTRRALHLAREHARPPPCYRCALCGKSRRKHGSVSIYACPHCPVRFDTLTRRALHLAREHARPPHCYRCALCEKRFLLAGDRISYSNLLCKGRSKDEENPEEDTPQARLGVDIRVSSLPGALRYAHSARAPPGAGARAPAPLLPVRPPGKRFLLAGLFIIPRIGPKRRKHGSVSIYACPHCPVRFDTLTRRALHLAREHARPPHCYRRRKHGSVSIYACPHCPVRFDTLTRRALHLAREHARPPHCYRCALCEKRFLLAGDRISYSNLLCKGRSKDEENPEEDTPQARLGVDIRVSSLPGALRYAHSARAPPGAGARAPAPLLPVRPPGKRFLLAGLFIIPRIGPKRRKHGSVSIYACPHCPVRFDTLTRRALHLAREHARPPHCYRRRKHGSVSIYACPHCPVRFDTLTRRALHLAREHARPPHCYRCALCEKRFLLAGDRISYSNLLCKGRSKDEENPEEDTPQARLGVDIRVSSLPGALRYAHSARAPPGAGARAPAPLLPVRPPGKRFLLAGLFIIPRIGPKRRKHGSVSIYACPHCPVRFDTLTRRALHLAREHARPPHCYRRRKHGSVSIYACPHCPVRFDTLTRRALHLAREHARPPHCYRCALCEKRFLLAGNLSSHMLNTHQKVKRHWCGECGAGFSLRQELEAHSAAHTDQYLYHCHHCPKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -