Ufer027118.1
Basic Information
- Insect
- Udea ferrugalis
- Gene Symbol
- znf711
- Assembly
- GCA_950022985.1
- Location
- OX465542.1:692479-712497[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.02 1.9 10.0 1.8 3 23 280 301 278 301 0.97 2 12 0.1 9.7 7.7 2.4 2 23 308 329 307 329 0.97 3 12 1.7 1.6e+02 3.9 5.3 1 23 333 355 333 355 0.95 4 12 1.2 1.1e+02 4.4 3.6 1 14 365 378 365 388 0.84 5 12 0.023 2.2 9.8 1.2 1 19 424 442 424 444 0.94 6 12 0.02 1.9 10.0 0.2 3 23 455 475 454 475 0.95 7 12 0.1 9.7 7.7 0.3 2 19 485 502 484 504 0.92 8 12 1.3 1.3e+02 4.2 0.1 1 23 512 534 512 534 0.93 9 12 0.0089 0.85 11.1 0.6 1 20 539 558 539 560 0.95 10 12 0.00027 0.026 15.8 0.4 3 23 620 640 619 640 0.98 11 12 0.00075 0.071 14.5 6.6 1 23 644 666 644 666 0.99 12 12 5.5e-05 0.0052 18.0 0.2 2 19 673 690 672 693 0.94
Sequence Information
- Coding Sequence
- ATGGAAGCTGATGTAGACACAGTTAATGATGAAACGATCGGCGGTTTATTAGATGAAGAGAATGCTGAAAATGCGCTGTTCGCTTGCCGTGGCTGCTTGGCTACGGATACAAAGTTATTTAAGCTGTATGAAAAAGATCTTTACGAAGCTTTTGAGGACGTCGTGGGAAACCCTGTATTTGAAGCAGACGACATGCCACAACACCTGTGCCAGTACTGTGCCACTTTGGTCCGCAAGTTCATTCTGTTCCGGGACCGCTGCAGGAAGACCCAGGATTTGTTAGATGAAGTTGTATGTGATGGAAAAGAGATAACAATGGACTATATAAAATCCATAAATCGCAACAGGCTCAGACTAGGCTTGAAGTTAGAATGTACGAACGTCATCCATACAGACAACGTCGATAGGAAAGAAGACGAAGACATCTTCACACATTCAATCAATGAAATGACAATTAGAAAGTTCATCGAAACCGTTGATGTTCTTGAAGATTTACAAGATGAACAAGGTTATGGAAGCGATGATAAGAGTGATGATGGGAAGAGATTGACTGATAGTGAAGATGACGGAGTTGTAGATCCGACCGATCTGtttttcaagaatattttaccGAAGGTGATTAGTTCTGCTCCGATAGAAAATTTGGAAGAGAAACATGAAGAACTcaagAAAACATCAAAGAAGGGAAGACCCAAGAAGGTCAAACTGCCAGAATTAGCGAGCACGTTTCAGTTCGGCGAAGCTAACGGCATGCTTGTAGCCGAGCTGACTCCGGAGCAGCAACTCCAGGAGTTTGAGCAGATGAAGCTGAATCAGGAACAGCGAGGGTGCTTGCTCTGCCACTTCTGCGCCAAGAACTTCAGATTACAAGTGAAGCTAGATGTACACATGAAGATGAGCCACAACCCGTCGGCCCAGTTGGAGTGCCACATTTGCCGCTTCCGGAGCAACGACAAGTCAAGAATGGAGATCCATCTTCAGAAGCATAAGTATAAGTTCTCGTGCAAGACCTGTCGCTACACGACCCACAACCGCGAGGCCGTCAAGAAGCATCACGAGGGCCACGGGGACTCCCAGGCCCCCACCACCAACTACTCCTGCCAGTTCTGCGAGAAGGTGTTCAGCCAGCTGGGCGCTTGCGTCTGCCACGTCCGCAGTACGCACCAACAACAACTGCCGATGTGCAGATTTTGCGGCGAAAGCGCGATGTGTGAAGCGGGGCTCCGGAGACACGTCAACAGATGGCACAAGGAAATATTAAATTCCGAACACCAATGCAAGAAATGTGAGAGCAGGTTTAAAACCTCCGAGGCGTTAGATAACCACGAGTCTGGGAGTCCTGAGATCTGTAGCGAGAACCCTTGCCTACAGTGTGGCGAATCGTTGGAAACCCTGGAATTATTACGGCACCATTTGGCACAGCATTTAGTTAGAGGCAGCCTATCCTCAACCAAATGCAACATTTGCAACATCCAGTTCACGTACACCCGTGCTCTGTACCTCCACTCGCAGGCGCCGTGCGCCAAACGCGAACACACTTGCGTCCAATGCGGTTGGAGCGCGCAAGAAGCAGGGACGTTGGGGGAACACCTCACTTCGCATGAGATGGATAACTTCCAGTGCGATAATTGCGACCGAGAACTCCGTGACCGCTATCGCCTCCAAACGCACTACATCTTCTGTATCAAGAACCCGCTGGAGCCCAACAGTGGACATCGCGTCAGCAAGGGGCAAGGGATATTCAGGGGCCTCCAGCCAGAAAGGCGCGAGAAGTTGTGGGGCGTGAGTGGGGGCCGACTGACGGCGCTTCGCTCGGACGGGCCCGACCTAGTGCGCGCTTCCGAAGCGACCAACATCTGCCACATATGTGCTGCGGCCTTTACGGAGCCTCGAATGTTCACCGCGCACATGCGCACGCACGAAGGGCGCTATCGCTGCGACTTCTGTCAGAAGAACTGCCACAACAAGTCCAAACTCATTgaGCATATAAGGACTCATACTGGCGAGAAGCCCCTCCAGTGCCCGCACTGTGAGAAAGCCTTCAGAACTAAAGCGGCCTACAATCGACACGAAGTGGTGAGTTTACAAtga
- Protein Sequence
- MEADVDTVNDETIGGLLDEENAENALFACRGCLATDTKLFKLYEKDLYEAFEDVVGNPVFEADDMPQHLCQYCATLVRKFILFRDRCRKTQDLLDEVVCDGKEITMDYIKSINRNRLRLGLKLECTNVIHTDNVDRKEDEDIFTHSINEMTIRKFIETVDVLEDLQDEQGYGSDDKSDDGKRLTDSEDDGVVDPTDLFFKNILPKVISSAPIENLEEKHEELKKTSKKGRPKKVKLPELASTFQFGEANGMLVAELTPEQQLQEFEQMKLNQEQRGCLLCHFCAKNFRLQVKLDVHMKMSHNPSAQLECHICRFRSNDKSRMEIHLQKHKYKFSCKTCRYTTHNREAVKKHHEGHGDSQAPTTNYSCQFCEKVFSQLGACVCHVRSTHQQQLPMCRFCGESAMCEAGLRRHVNRWHKEILNSEHQCKKCESRFKTSEALDNHESGSPEICSENPCLQCGESLETLELLRHHLAQHLVRGSLSSTKCNICNIQFTYTRALYLHSQAPCAKREHTCVQCGWSAQEAGTLGEHLTSHEMDNFQCDNCDRELRDRYRLQTHYIFCIKNPLEPNSGHRVSKGQGIFRGLQPERREKLWGVSGGRLTALRSDGPDLVRASEATNICHICAAAFTEPRMFTAHMRTHEGRYRCDFCQKNCHNKSKLIEHIRTHTGEKPLQCPHCEKAFRTKAAYNRHEVVSLQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -