Ufer028044.3
Basic Information
- Insect
- Udea ferrugalis
- Gene Symbol
- -
- Assembly
- GCA_950022985.1
- Location
- OX465543.1:2293581-2320984[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.44 41 5.8 0.1 2 23 502 523 501 523 0.92 2 13 0.21 20 6.8 0.1 1 17 533 549 533 550 0.93 3 13 0.52 50 5.5 2.4 1 21 655 675 655 676 0.93 4 13 0.034 3.2 9.2 3.8 2 23 741 762 740 762 0.95 5 13 4.9 4.6e+02 2.5 0.1 2 11 805 816 804 820 0.84 6 13 0.00035 0.033 15.5 0.6 2 23 839 862 838 862 0.96 7 13 0.066 6.3 8.3 0.2 1 23 868 890 868 890 0.93 8 13 0.0021 0.2 13.1 3.3 1 23 896 918 896 918 0.98 9 13 0.086 8.2 8.0 0.3 1 23 1027 1049 1027 1049 0.98 10 13 2.4 2.3e+02 3.4 6.2 1 23 1056 1078 1056 1078 0.95 11 13 0.0023 0.22 12.9 1.6 1 23 1119 1142 1119 1142 0.95 12 13 3.7e-05 0.0035 18.6 1.8 1 23 1149 1172 1149 1172 0.98 13 13 0.0036 0.35 12.3 0.2 2 23 1194 1216 1193 1216 0.96
Sequence Information
- Coding Sequence
- ATGGATGACAGTCAGCCACCACTGATTCTCTGCATGGATAATTTGAACGGAGAAGAAGTGGCGTTGAGTATTGAACAAAATGATGATTTTCAGTCTTTTCTCAGCAAGGCCAAAAACACCCTCGGTTTTGACGTCGACCTAAATTCCATCACTAGAAACCAGCCAGTATCTCTGAACGACAACATATACCAATTCCTAGTCAATTCCGAACCAAACCTGGCCTCCGAACCAATgccaatacaaacatttgatcAAATGGAGCCAAATGACTCCAATGACTACTATATCTTGGATGACGGAACCCAAATTAGAGCTTCTCAAATACATTTCGATAATGAAGATCCCCAAGTTGATTTGTCAGCTGAGCAAATACCATTTGTGAAATATGTAGATGATGGCATTGATGCTGCAGAAGATCTTGACCTAGAAAATTCAGCGGATATTGAAACAACTAAGTTCAACATCGTAGGTAGCCCAATCTCTCATTGGTCTAGCGAAGAAAACAGTCCAAAACGCAGTTTTATCAATACTTTACCTTTCAAATTAGTTTGCAATAATACCTCTGCCTTTGAAGCCCAATTTACCAAATATTTAGAGACTAGTAACTCTAAAACTTATACAACCTTGAACCCTGTGACTAATAAGAATAAAAGCCCTAGAAGTCTGATTAgagataattataaaaactacGACGATAAGTTTATAAGAGGTGACGATTTCACTGGATATACTCGTGAAGAAATACTTAACATGTTCAAAGATTCTCCAGTAACGCCACTTCCTTACGAAGGTCAGAATTTGAATGAGAAGAGAAGGCATGTACGGAAAACTGATCCTTCTCGAGCTGTACATAAGAATTGGAACTCAAAACCCGTCAATTACGATGATGGTATTCTAATAGGAGATGTTGAGAATCAGAATTGTTTCATATGTGGCAATTTTGTTGAGAATAACATTGAAAAGCTGTATTTATTCGACAATGAAGATCAGAAACTGCACAGATCATCACCGCAGAAGAAATCTTCAAGGCAATTGAAGATAATTTGTGAGAGTTGTCTAGGCAAGAACTTCAAACCTGGCAGAATGAAAGGACCGAACCAATGTCTCGGTTCTGACGAATATTTAGTCATCAGGAACAATCAGCAGTATATTTTCCAAAAGACCaataaaatagaatttaaaTCTGATTTCGTTTATTCAGATACAGATTTGAAAAAGAAAGATGTTTCTAAACGCAAAGAGGAGAAAGTCGAGTTTGTTAAAGTTGAAATAGGTTCTGACGGAGAAATTGTTACAAAGCCTATAGACAATGATCCGAGATCTTCTGATGATGTAGTCATTGTGAAAGACGAAGACAAAGATTTGAGTTCTGATAGTGATGTAGAAATAATAGAACCTTCAGTGATAGATGATAGCGTGATAGACAATCTCGAAGATGCAGACGAGGAAGTTAAGGAGTTTTTGGGGAAATATCAGCAGGATTGCACCGCTGTTACAGAACTGAAATGCAGGTTCTGCGAGCGTGTATTCGCCGAACTCTCCGAGGTACTGGACCATACGGATGAGCACAAACATGACTTGGAGGAGGACGCCGTGTACCCCTGCCCTCTCTGCGATTACGGTTACGCAAATTCAAAATGGCTGAAAGATGCACCAAAATCAAAAACTGGATCCCCCATAGCTAAAAGAACTCGAAGTTCTGCAAGGAAAGTGGACAATGATCACGAAACAGAAAGTCCTGAAAAACCTGCAGAAGAGAGTGCTCAGATTGTTACGAATGCTGAATCGACGCAATCTACCCTAATACTAAAAACGGAAGTGAAACAAGAGGCCATAGACAGCAGCGATGATGAGATATGGATCGTTCAGACTGGTGATGATGATGCCACGGAACAGATCGAGAACCTGCTACAAGCGGCTAAGGGTTGCCAGAAAGATAATCCAATTGTTACTAAGAAGTCGCACAAATGCTTCAGCTGCAGtCGAATCTTCCCGACAGCGGAGGGCCTATCCTCCCATAAGTGCAGATCTCGCCGAGGTAGAAAGAGGAAGTCTGTGAGTAAAGACGACAACATCTGTGTACCCACAAAAGAGGACTTTATTAAGAGAGCTCAAGGGCGCCCTAGAATGTCCAATATAACTGACTCAGACAACGACTTGTTAGTGCCTAGAGGTCGTCGCAGAAAGAACAAGGAACCTACCTCTGACCCTCAAATCGTGACGTGTCACAATTGCAACGAGTCCTTCACTTCCAAAGTGAGACTCAAGTTTCACATGCAGTTCCACTCCCCCTCCCGCAAGCCAACCACAGACGGTCGCTACTCGTGCTCAGAGTGCGCAAGCGCAAGTTTCGACACAGAGACGGAACTGTTCGACCACGTACACTTCCAGCATGACAAGCAGAAGCGCTGGCAATGCCCCGTGGCTAGCTGCGGGAAGACTTTCTATCTGAGTGACACGGAGACGGAACTGTTCGACCACGTACACTTCCAGCATGACAAGCAGAAGCGTTGGCAATGTCCCGTGCAGAGCTGCGGGAAGACTTTCTACCTAAGGGCAACACTGACGAAGCACAGTcgcacacacacagacacaagGCGCTACGTGTGTGTCACTTGCGGGAAGCGATTCCTGGATAAGCAGACCTTGGATGAGCATGGCGTTACTCACTTACAGATAAAACCCTTCCAATGCCACATCTGCTTGAAGCAGCTGACTCGTCGCTCCAGACTCCGAATGCATCTTCGAGCTCATGAAGAAGAACTGACCCTGGCGAGAGTTCTGGTCTGTGCTGTTTGCTGTCGCGCCTTTAGCGGGCCTAGTGATGCCCAGGATCACGCAGCCAAGTCAACTGAATGTATAGAAGAGTTTACAAAAGAATTGAAAGAAGAAACGGAAGACACTCCTGCGCAACTCTCTCCCACCAGTGGGCTTGTCAGAGAAAAAGTGAAAACTGgATCTCCAAAGCTTCTAAAACCCATACCCCGCCAAGTGTCAGACTCTTTGGCAGAACCACTGCTTTCGAGTCTGGGTGATGAAGCGCGTGGGATTATTCGAGTCGTCGAGATCGAAAAGGCCTTTCGATGCGAGTTTTGTGAAGATGTGTTCTACATGGAAGATGGCTTGAACTCCCACCGCAACATACACAAGGGTGTGAAGAACCCTTTCACTTGCCATATTTGTAAAGTAGCCTTCGCTACCTATTCTAGGTGCACAACCCACAAGACAACCCACGGCTTCTACAAGCGCCCTCTAGCGGACGCCAAGAAGAACGCATCTAAACCGAGCGAACCCGAAGGCGGGCCCTCCGCCACTGGGATACTGGGGTACGGCGGGTTCCCGGTAGTCAAACACTTTCTGTGCGGGGACTGCGGTCGTTCCTACCTCCACTGGACGTACCTGCAAGTGCACCGCCGAATGAAACATCCGAATGACAACTTCTTGTACAAGTGTAACCACTGCGACATCACCTTCCCTAATAGCTGGAGTCTAGCGTATCATAGAAAGAAAATACACAGCCAGACCGGTCAAGGGGACGCTAATGCCACTTCTAAAATACCGAGGGAAGATTACAGGATACCGTGCCGTGACTGCGATGAAGTGTTGCCAAACAAAACTGCGCTCTATAAGCATAGGAAGAAAGAACACAGTGATATATCGCTGCGTGTCAACAACAAGCCACGTATGTATATGCCAATACCACAATGA
- Protein Sequence
- MDDSQPPLILCMDNLNGEEVALSIEQNDDFQSFLSKAKNTLGFDVDLNSITRNQPVSLNDNIYQFLVNSEPNLASEPMPIQTFDQMEPNDSNDYYILDDGTQIRASQIHFDNEDPQVDLSAEQIPFVKYVDDGIDAAEDLDLENSADIETTKFNIVGSPISHWSSEENSPKRSFINTLPFKLVCNNTSAFEAQFTKYLETSNSKTYTTLNPVTNKNKSPRSLIRDNYKNYDDKFIRGDDFTGYTREEILNMFKDSPVTPLPYEGQNLNEKRRHVRKTDPSRAVHKNWNSKPVNYDDGILIGDVENQNCFICGNFVENNIEKLYLFDNEDQKLHRSSPQKKSSRQLKIICESCLGKNFKPGRMKGPNQCLGSDEYLVIRNNQQYIFQKTNKIEFKSDFVYSDTDLKKKDVSKRKEEKVEFVKVEIGSDGEIVTKPIDNDPRSSDDVVIVKDEDKDLSSDSDVEIIEPSVIDDSVIDNLEDADEEVKEFLGKYQQDCTAVTELKCRFCERVFAELSEVLDHTDEHKHDLEEDAVYPCPLCDYGYANSKWLKDAPKSKTGSPIAKRTRSSARKVDNDHETESPEKPAEESAQIVTNAESTQSTLILKTEVKQEAIDSSDDEIWIVQTGDDDATEQIENLLQAAKGCQKDNPIVTKKSHKCFSCSRIFPTAEGLSSHKCRSRRGRKRKSVSKDDNICVPTKEDFIKRAQGRPRMSNITDSDNDLLVPRGRRRKNKEPTSDPQIVTCHNCNESFTSKVRLKFHMQFHSPSRKPTTDGRYSCSECASASFDTETELFDHVHFQHDKQKRWQCPVASCGKTFYLSDTETELFDHVHFQHDKQKRWQCPVQSCGKTFYLRATLTKHSRTHTDTRRYVCVTCGKRFLDKQTLDEHGVTHLQIKPFQCHICLKQLTRRSRLRMHLRAHEEELTLARVLVCAVCCRAFSGPSDAQDHAAKSTECIEEFTKELKEETEDTPAQLSPTSGLVREKVKTGSPKLLKPIPRQVSDSLAEPLLSSLGDEARGIIRVVEIEKAFRCEFCEDVFYMEDGLNSHRNIHKGVKNPFTCHICKVAFATYSRCTTHKTTHGFYKRPLADAKKNASKPSEPEGGPSATGILGYGGFPVVKHFLCGDCGRSYLHWTYLQVHRRMKHPNDNFLYKCNHCDITFPNSWSLAYHRKKIHSQTGQGDANATSKIPREDYRIPCRDCDEVLPNKTALYKHRKKEHSDISLRVNNKPRMYMPIPQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -