Ufer016064.1
Basic Information
- Insect
- Udea ferrugalis
- Gene Symbol
- -
- Assembly
- GCA_950022985.1
- Location
- OX465529.1:3205262-3218034[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.0039 0.37 12.2 5.9 2 23 730 752 729 752 0.95 2 8 6.1e-05 0.0058 17.9 0.4 3 23 768 788 767 788 0.98 3 8 0.34 32 6.1 0.3 1 23 795 817 795 817 0.97 4 8 2.3e-05 0.0022 19.2 1.5 1 23 835 857 835 857 0.98 5 8 7.2e-05 0.0068 17.7 1.7 2 23 864 885 863 885 0.97 6 8 1.6e-05 0.0015 19.7 1.0 1 23 891 913 891 913 0.98 7 8 0.00066 0.062 14.6 1.3 1 22 919 940 919 940 0.96 8 8 0.0022 0.21 13.0 1.7 1 20 960 979 960 984 0.94
Sequence Information
- Coding Sequence
- ATGGCAAATCAAGATGAGCTATTGGAGGGTTTTTGTCGAGGATGCTTGGTTAAATATGATGATCCAACCGATTTATTGCACTACACAGAGAGAAACAGAAGAATGTTCATTTACTCAACCGGTATTCAGGTCAAACGCACAGATGCTTTCACATTCCAAATATGCAAAGACTGCAATATGAACATGAGGCTTTCCTGCAAGTTCAGGAAGCTGTGCCGTACCTCTGATAGGAGATTCAAAAGCTACTTGAGGCTAAAAGAGATTGGAGAAGCTACAGATCTTGctacatatgtcaaaaacactGATGACAACTTCAAATTCCCTCCATTAAGTGGAAATAGCACACCTGCAAATCAGAAGATTCGAGAAGAGGATAATGAGTCAACATGCACAAGTATCAGGAATTTCATGTCAGACATACTCCAAGGAGAGGAAATGCCAGACTCTGAGGCAAGAATTATAAAAGAGGTGATCGAGGAGGAAGCAGACTGCCTGGATGACTCTTTGGACTCTCACTGGCTTCAAGATGATGTTTCCATGGGTACTGATTATAGATTGGATTTTAGTTTCAGCCCATTCACAACTCCGCACGCCATAAACAACGATAACCGTTACATTCCTAACAAACAAATTCCAACAAAAGTTCCGTATCGCAATAACCATGCTAAGAGAGTATTCCAACAGCTACCAACAATGCACTATGATCAGGATGATAATGCTGTAACCATGAAACCATTGGATGAAAGTTTCGGACAAGACAATCAAACTGATCAGAATAATTTAGAAGAGAAAGCCACTGATGATGACTTGGATGCTAAATTTCAAAATGATGATACTATGAATGATATATTACAGAGTGAGGATTATTTACATCATACAAGCAATAATGATGTGCCTGTAAAAAGTTTAGATTTAAGTGCTTTTGCAACTGAGTATGAGATTAGTAGGAAAATTACGAATAAGATTAATATAGCTGTGAAAAATGTCGGTGTTAGTGCTTTTGAGCATAAATCCGAAGTTCAAAAGAGAGATTTAAGTATGAATGATATGTCAACAAAATGTGGCGACATGAATACCTTTGAAGCTGTATGTGGAAATAAACGAAAAGCAATAAGTGAGGAGAAAGCTTTAGTTAGTTGTAATGATCTAGATTTACCAAATAAAACTATATCTAAGAACGCTGCTAATGAGTTAGATATAGCAGTAAACAGCATTAATTCGAATACCTTTGGAAtcgaatctgaaaataatagtcAAATTAACGAAAATGATATAGAAGATATGAGTATTGATTCAAATGCTTTCGAAACTGAATCTGAGACCAACAGAAGAGCCACAAGTGAGCTAGATATAGCCATTAACAATATGGCGTTAACCACATTCGAAACTACATCGAAAATAACCGGTGAACTAATAGTTGAGGATGAAGCAGTTGAATCAAATGGTGATTTCAATGCTATTAAAACAGCAACTGAAATTGACGGTAAAAAAACCAATGCTGACAAAATATCTGTTGCCAGTTTTGATTTGAATGCTTTTGGAGAGGAGTCCAAAGTTGATAGCAAGTTAACGGAAAACGAGCTGGCAGTCAAAAGTATTAGTACTAATCATTTTGGCATGGAAtttgaagatgaaaaaaaagcCCTTGAAAATGAATTTTTGGAACAAATAATAGGTGACTGTACACCAAAACAGGACCCTCTGTTTGAAGAATGTGTAGATAAAGAGAAAGATGTAGATGGTATTCAGAAAGCTGTAGATGGTATCGATAAAAACTTAGTGGTGGCATTGAGGGATGAaactaataaaatgttttctttggATGATTTATTAGTTTCACCAGCAAGAGATGTAATAGCAAAAGTTTTAGGCCCACCCAACGGAGCATCAACGCCTACAATAAACAACATACTTTTTGGCGAGAAACTCAACGAAGACAGCAACGAGGTATACAAAATGGGGCACTGTGTCGTGAAATTGGAGAAGGTTGACGAACAAGTGGACGACCTTGAAGAGTTCATCCAAGAAGCAGTTAAAGAATTAGACGTGGACATAAAAATTGAACCAGATAACCCCGTGGAACTACCGTTCGGTATAAAGTACCTGGAGAAAGGCGTGGACATAAAGATTGAACCATACGACCACATGGACTTACCGTTGGTTTTAAAGTACGATCTAGAGAACTGCGAATGTAAGGAATGCAAAAAGAAGTATAAGTCATTGAAGGCATTAAAAGTTCACTTGTGTAAAGTGCATAAGATTAAATTTCCTAAACAGAAACCAGATTATACACTGAAAATCTGCCCTCATTGTGGGTATTCTGCGACAGATACTggaaattatgttagacatatGAATACTCACAAGAAGAAAACGgGCCCATTCCAATGTGCAATATGCACTATTTGGTTCGAATCTGAATCCAGATTGAAATTGCATTCAAAAGTGCATAATATAGTAATAAATGAGACTAAGAAGGTCCATGATAAAGTTGAAAAGAAATATGTCTGCAGTACTTGTGGAGCACAGTTTAAGACTTCGAGCAACTTTGCTATGCACAAACGCAAACATACCACCGCATACTCTCAAACATGTGATATTTGTGGCAAAGGATTTCATAGGATGGTTGACTTGCAAACACACAGgagGTCTCACACAGGGGAGCGCCCTTTTTCATGTCCACAATGTGAAAGGAAGTACGCTACCAAATATCGTCTCGTCGTCCACATGAGGACACATACAGCTGAAAAACCATTCGAATGCGACTACTGCTCTACGCGATTTCATAAAAAAGACAATCTCATCGGACACATCAGAAAATCCAAGACATGTatgaagaaaagaaaagatCCAGTAAAGAAGAAAAGTGTGAAAAGATTCAAATGCTCTGTCTGTGACTTGAAGTTCGCCAGCCAGAAAGGATTGGCAAAACACGAGTGTAAAAGAACCTTCATAGTAGAAAGCAAAATCATTCCAAAATCAGAAAGGGTGCCAGTATTGACTGAAGAAAATCTGAAGGATATGCCTGTGCTTATTATGCAGCAGTCTCTGCCAGAGATTATAATTCATTAA
- Protein Sequence
- MANQDELLEGFCRGCLVKYDDPTDLLHYTERNRRMFIYSTGIQVKRTDAFTFQICKDCNMNMRLSCKFRKLCRTSDRRFKSYLRLKEIGEATDLATYVKNTDDNFKFPPLSGNSTPANQKIREEDNESTCTSIRNFMSDILQGEEMPDSEARIIKEVIEEEADCLDDSLDSHWLQDDVSMGTDYRLDFSFSPFTTPHAINNDNRYIPNKQIPTKVPYRNNHAKRVFQQLPTMHYDQDDNAVTMKPLDESFGQDNQTDQNNLEEKATDDDLDAKFQNDDTMNDILQSEDYLHHTSNNDVPVKSLDLSAFATEYEISRKITNKINIAVKNVGVSAFEHKSEVQKRDLSMNDMSTKCGDMNTFEAVCGNKRKAISEEKALVSCNDLDLPNKTISKNAANELDIAVNSINSNTFGIESENNSQINENDIEDMSIDSNAFETESETNRRATSELDIAINNMALTTFETTSKITGELIVEDEAVESNGDFNAIKTATEIDGKKTNADKISVASFDLNAFGEESKVDSKLTENELAVKSISTNHFGMEFEDEKKALENEFLEQIIGDCTPKQDPLFEECVDKEKDVDGIQKAVDGIDKNLVVALRDETNKMFSLDDLLVSPARDVIAKVLGPPNGASTPTINNILFGEKLNEDSNEVYKMGHCVVKLEKVDEQVDDLEEFIQEAVKELDVDIKIEPDNPVELPFGIKYLEKGVDIKIEPYDHMDLPLVLKYDLENCECKECKKKYKSLKALKVHLCKVHKIKFPKQKPDYTLKICPHCGYSATDTGNYVRHMNTHKKKTGPFQCAICTIWFESESRLKLHSKVHNIVINETKKVHDKVEKKYVCSTCGAQFKTSSNFAMHKRKHTTAYSQTCDICGKGFHRMVDLQTHRRSHTGERPFSCPQCERKYATKYRLVVHMRTHTAEKPFECDYCSTRFHKKDNLIGHIRKSKTCMKKRKDPVKKKSVKRFKCSVCDLKFASQKGLAKHECKRTFIVESKIIPKSERVPVLTEENLKDMPVLIMQQSLPEIIIH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -