Ufer025816.1
Basic Information
- Insect
- Udea ferrugalis
- Gene Symbol
- -
- Assembly
- GCA_950022985.1
- Location
- OX465539.1:10581326-10584761[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 8.9 8.4e+02 1.6 0.3 1 13 87 99 87 103 0.79 2 18 1.6 1.6e+02 3.9 0.1 1 20 269 288 269 290 0.89 3 18 0.00083 0.079 14.3 3.6 1 23 303 325 303 325 0.98 4 18 3.6 3.4e+02 2.9 0.2 2 23 329 350 328 350 0.88 5 18 0.36 34 6.0 1.7 1 23 355 378 355 378 0.95 6 18 0.00096 0.091 14.1 0.1 2 23 433 455 432 455 0.96 7 18 0.00077 0.073 14.4 4.2 1 23 461 484 461 484 0.97 8 18 0.0068 0.65 11.4 0.2 1 21 488 508 488 509 0.95 9 18 0.0021 0.2 13.0 2.1 1 23 517 540 517 540 0.96 10 18 0.056 5.3 8.6 1.2 1 23 545 568 545 568 0.95 11 18 0.0073 0.69 11.3 0.3 3 23 582 602 580 602 0.95 12 18 3.5 3.4e+02 2.9 2.7 1 23 607 629 607 629 0.95 13 18 0.00011 0.01 17.1 2.6 2 23 667 688 666 688 0.95 14 18 0.065 6.2 8.4 0.0 2 21 693 711 692 712 0.94 15 18 0.023 2.2 9.8 1.0 2 23 734 756 733 756 0.96 16 18 4e-06 0.00038 21.6 1.7 1 23 762 784 762 784 0.99 17 18 2.2e-05 0.0021 19.3 4.0 2 23 791 812 790 812 0.97 18 18 0.002 0.19 13.1 0.9 1 23 818 841 818 841 0.89
Sequence Information
- Coding Sequence
- atGGAACTGCCTAAAGCTGAACTTGAAGATTCCGAAGATAATATATCCAACCTAATGCGTTTCAAGCAGAAGCTTTCAGCTGTGTGCCACGCTACACGATTCTGTGGCATTTGTTTGGATGCTGATACCTCTCAGAAACTTTGGGATATCACTACAGAGTTTGACATAATCGTTGGACAAACCACTCAAAAGAAGCGATTGAAAGATATTGTTGATTATTTACTCAACAGCGagaGCCATCAAATTCTTGCCAGTTCCTTCGTATGCAGCCATTGTACAGAAAAGTCCATTCAATCGTTCCTGTTTATTTACAATGTTAAACAACTCTCCAATATAATACACAAATGTGTTAATGAGTTACATTCTAGAACATTAAATGTGGAAAAACAGTTGAAATCTGATAACAACTGGACCAATTCCAATGCTGTTATTGTTTTAGAGGAAGATGATGAAATGCTCAACTACATAGATATTGACAAAATGACTGAAATTATTGCTAAAGAAACTTCAAAAGCTGATGAACCTACCGATGCAAAAGATAATCAAATCGAATCAGTTTTTCTTGAAGAAATAATTAAACCAGAATTTCCCGAACCTAATGAAATCACTTTAAGTGCAGACATTAAAATAGATGCAAATGATtgcaaaatatttgaagaaacaGAAAGTGATCAACATGTAGAAATAACTTACATTGACGCTAACTCAGACGCGCCGATCAAGATCGAAAATGAAAGTACAGTTATGGCAATCAAATCAAACAGTCCAAGAAAAAAGAGAGGAAAATTCAAGCTACAACAAACATTCAAGTGTCCCACTTGTAAAGTAATAATACCAACTTATAAATCATGGAAAGAACATCGGACAGTAtgtaaacaaagaaaattcGGCCAAAGTACCCTTGTACATACTTGTAAACTATGTAATGAAGCATTTGTTTCTCAAAGATTTTTGAACACTCACTACAAAAGTCATGGCAAGGTACGATGTAAAGTATGTCTATTTGTTATTTCAGAAGATGATTTTACTGAACACATGAAAATTAATCATGAAGATTACATACACCCTTGTAAGCTATGTAATTTCTTCTCATATTCTACGGATGGTTTGAAAGCACACACAGAAAAGTTGCATAGTGGCCCGCAGTGTGCcttgtgttttaaaaatgtgaaaCAAATTGATTTGAAACATCACAGATGTAAATTCAACTGCTCAGAATGCTTAGACAATGTTTGCATTCATTACAAATACTTGTTGTCTTTCAGAGATCAAGTAATGAATAAAGCTGTTGAAATTAAATGTCCTGATTGTGATTATGTCTGTCCTAGGAGAGAAGCATTACTAGGGCATGTCAATAGGGAGCACTTAGATCATCACCCTTTCACATGTGCTCACTGTGAACAACAGTTTTATTCTCGTTCTTCTTTACGGTATCACATAAACCGCTTCCATAAGGAAAGGTACGTCTGTGAATTCTGTGATCAAGAGTTTTACACTATAGTCTCGTTAGAAAACCATAGAAAGCTTTGTCAATGCATGGAGAGAGATTTTCAATGTGACCGTTGCACCTGTTCATTTAACACTTTAGAAGAATTAGCAAACCATGTCAAATTGAGACATGAAGAGGACACTTTTGATTGCAATTTGTGTGAGAAGAAATTCCTATCTACTGTGAAATTGCAAGATCACATGTTCAAAGTGCACAGTGGTCTACAAATAAAGAGGAAAAGGTCGCACCTGGACTGCCCTGTTTGcaacataaaatgtaagaacAGGGCTGCATTGTTGGACCATGTTCAATTACATCCTGATTCGAGGTTTCCTTGTAAAGAATGCAATAATGATTTCGATTGCATAAGGAAATTGCACGCACATGTGCGAATACACTATGACGATGTTATACAATGTGTTAACTGTAAGAAggttttgacaaaaactttctTTCCACATCATATGGTGTACTGCAATGTGGGGAAAGAAAACGATGATCAGGTCTGCACATGCGAAATATGTGGTCGAACTTATTCGAACGAAACTCAACTGAGATACCATCGTAAAGCCCATATGGCTAAAGTCCCATGCCCTAATTGCCAGAAACCAACACGACCAGCTTATCTTAAGAGTCATATAAAGCTATGCAAGGGTCTGAAAGGAATACCCAAAATGTTAGGAAAACCCAAACAAAGCATCAAGCATATGAAATGTGACTGGTGCGATCACTCGATGTCCAGATATACTGAATTGGAAGCTCATGTGAACAGGTTCCACTTGAAAGTGAAGCCGTATCAATGTAGCTATTGTAAAAAGGCGTTTTTTGGCAAAGAGAACCTGAAGAATCATCTTATAACTCACACTTCAGTGAAAGCTATTACATGCACTGTCTGTAACAAGACGTTTCAGAACAAAGCGTGCCTTAAGCTACATATGAGGAGGCATACTGGGGTTACTCCTTACACTTGCGAAATATGTGGAGAGAGATTTAGAACTTCAAGCATTATGAATACGCACAAAGTGAAGAAACATTCGGAGAGAACAGTGGCATGTCCTTTGTGTGAGTCGATGTTCCACTTGACAAGGGAAATGAGAGGTCACTTCAAAAAAGTGCATTGGAGACAAAAGGGGAAGAAATTCGATCCTAGAGATGTGAAGGAGTTAAGTCCGGCGTTCTACCATCTGTTTGAAGATGGCAGAGTCACCAAAGTTGAGGGAGaagatttatatttttcaatgaaatgtAATGAGAAATATGACTAG
- Protein Sequence
- MELPKAELEDSEDNISNLMRFKQKLSAVCHATRFCGICLDADTSQKLWDITTEFDIIVGQTTQKKRLKDIVDYLLNSESHQILASSFVCSHCTEKSIQSFLFIYNVKQLSNIIHKCVNELHSRTLNVEKQLKSDNNWTNSNAVIVLEEDDEMLNYIDIDKMTEIIAKETSKADEPTDAKDNQIESVFLEEIIKPEFPEPNEITLSADIKIDANDCKIFEETESDQHVEITYIDANSDAPIKIENESTVMAIKSNSPRKKRGKFKLQQTFKCPTCKVIIPTYKSWKEHRTVCKQRKFGQSTLVHTCKLCNEAFVSQRFLNTHYKSHGKVRCKVCLFVISEDDFTEHMKINHEDYIHPCKLCNFFSYSTDGLKAHTEKLHSGPQCALCFKNVKQIDLKHHRCKFNCSECLDNVCIHYKYLLSFRDQVMNKAVEIKCPDCDYVCPRREALLGHVNREHLDHHPFTCAHCEQQFYSRSSLRYHINRFHKERYVCEFCDQEFYTIVSLENHRKLCQCMERDFQCDRCTCSFNTLEELANHVKLRHEEDTFDCNLCEKKFLSTVKLQDHMFKVHSGLQIKRKRSHLDCPVCNIKCKNRAALLDHVQLHPDSRFPCKECNNDFDCIRKLHAHVRIHYDDVIQCVNCKKVLTKTFFPHHMVYCNVGKENDDQVCTCEICGRTYSNETQLRYHRKAHMAKVPCPNCQKPTRPAYLKSHIKLCKGLKGIPKMLGKPKQSIKHMKCDWCDHSMSRYTELEAHVNRFHLKVKPYQCSYCKKAFFGKENLKNHLITHTSVKAITCTVCNKTFQNKACLKLHMRRHTGVTPYTCEICGERFRTSSIMNTHKVKKHSERTVACPLCESMFHLTREMRGHFKKVHWRQKGKKFDPRDVKELSPAFYHLFEDGRVTKVEGEDLYFSMKCNEKYD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -