Ufer029787.1
Basic Information
- Insect
- Udea ferrugalis
- Gene Symbol
- -
- Assembly
- GCA_950022985.1
- Location
- OX465545.1:6564571-6593240[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0075 0.71 11.3 0.1 3 23 126 146 124 146 0.96 2 12 0.0018 0.17 13.3 2.8 1 23 264 286 264 286 0.99 3 12 2.7e-05 0.0026 19.0 0.4 1 23 292 315 292 315 0.97 4 12 0.0094 0.89 11.0 4.3 1 23 320 343 320 343 0.94 5 12 0.00011 0.011 17.1 0.6 2 23 521 542 520 542 0.97 6 12 0.00083 0.079 14.3 3.7 1 23 548 570 548 570 0.98 7 12 4.3 4.1e+02 2.6 6.8 1 23 629 651 629 651 0.95 8 12 1.6 1.5e+02 4.0 0.1 2 23 659 680 658 680 0.96 9 12 0.0081 0.76 11.2 3.7 1 23 686 708 686 708 0.95 10 12 0.00095 0.09 14.1 1.8 1 23 714 736 714 736 0.97 11 12 0.0065 0.61 11.5 5.2 1 23 745 767 745 767 0.99 12 12 0.00031 0.029 15.7 0.4 2 23 815 836 815 836 0.96
Sequence Information
- Coding Sequence
- ATGAACCAAAACATGTCAATGGATATGGATCCACTTAGCACGTACGATTACCCAGCGTACAACAGCTATCATCCTGGCCCCGTAAACAACTTGCCTAACATACCGTACCAATACAACGTCAAAGTTGAGCCTGTGATAAACCAGGAGTTCTTCAATAATTTTCTGCATAATGTTACTGAAAGTAACGAAGAAAAGGTGCTGACTAATCTCAATGATACCACAAATTCTAGCACTAAACAGCCAAATATAGATGACAATATCAAACCTGAAATCCAGCCAGTTATTCAGAAGAATGTCAAAAAGGAGAAGAAAACTGGCAAGAGGAGTAGCTATTGGTCGGAGAAAATAACCGATGATGGCTTCAAATTCTACGGCTGTTCTATGTGCAATATTAGTTTCTCTACACTTATGGAGCTGGACCAACACGTCACTATTCATAAAGACAGGATAACGAGttatgatttaaaattaaagaattTGATTAGGAGAAAAAAGCTAAAGAAAGAACAGAAGAAACTCAAAAAGTTGAAAAAGATCAAAAAAGAAGATACGTTTGAAATTCCAGAAATCAAACCAGAAGATGGGTATATCGGCAATGAAAAGGCCACTGAATTTAATGGGGAAAACCAGAATAACTTAGTGTCAAATAGTACCGGGGACCAGCAAGATATTAAACCAAGTGATTGCAAAGAAAATAACGATGGAAATGCTAGTAACGGTGGAAATAGCAGCAACGATCCTGATCTAGCAGGCACAGATAAGCAATCATTGTTGAATTTGGAGAAGatttataaatgttttgctTGCCAGAAGCAATTTACGCTTAGCTACTATTTGAAACTTCATGTGAGGTCGCACACagatgagaaaccATACACATGTTCAGTGTGTGGTCAGTCGTTCATAACAGCCAGCAAGCTGGGACGCCACAACAAGCGGATACATCTCGCTATCCGGTACCAATGCAGGATCTGCTATAGATTCTTCTCCAAATTCGAAAATCTAACAACTCATTTTGACAAGAAACATGCCGACGATAAACTAGAAGGAGAACCTTATGACTACAACGCCATCCTGCCATACCTCAAGGAGTTGGAGGAACAGCTTAGAGAGAAGGCTGAGGCTGAAACCAAGCCCAAGACGGAGCTGTGGGACGAACTGTGGGGGCCCATGCCGGACCCCCCCTTGGAGGAGGTCAAGCCGCCCAAGGACGAGGAAGATTCCAAAAATTTCGACCTAGACTTCAAAAGAGCTGAACCTCTCGACATCCTCATTGAAGAGGTGAAGTTAGACGCTGATGTGGAAGTGAAGAAGGAGGTAGAGGAACTGCCTGAAGTGGAGGCTTTCAATGATGATTTTAgggctgatgatgatttaaGAGCTGATGATGACTTCAGGGTTGACGATGAAGCTAAGGCTGGTGATGGTGATAGCTTGAAGGATGAGAGGTACTCCGACGATGATTACTTCCCCTCCAACACGTGGGCGGCCTCCCCTAGGCTCCAGGAGGCCCCCCCCTCGCCGATGAGGACCCGCCGTAGTAAGGGCGAGGGGCCCCTGAAGTGCGACGTGTGCTCCAAGAGTATCAGCACTGTCTCTTATATGAGGGTGCATATGAGAACGCATACTGGGGAGAAGCCTTTCAAGTGCTACGTCTGCAAGCGAGGGTTCATCACGTCTAGCAAGATGCATCGGCATGTGCTCACTCACAACGAAACCTGGGAAGGTGATGAAGCACCAGTCAAATTAGAAGAAATAAAACCAGACTTGTCCGACGATGATGAAACATTAGACAAAGTGTCTCGTATCAAGAAGGCGAAGGCTAAGTTCAACCGCAAGACGCCACCTAGCGGCGACAAGCCGAAGAAATACAAGAAGAGGCCGCACGCCTGCGAGTTCTGTCACAAACGGTTTCTGCATATGGAGACTTTGTTGATCCACAAGAAGTCCCACGAAGGCGAAGAGCTAGTAATGAAGTGCAATTTCTGCCTCGAGACGGCGCCCGACGAGCCCTCGCTCCGGGAGCACGAGGCCACTCATACTGGACCGAAGCCCTATCTCTGTACTGTTTGTGGGAAGAGCTATAAGAAACGGGAGACTATGGTATACCACCGCAAGCACCACAAAGCAGACAAGGACTACATCTGCAACGTTTGTTCTAAACGGTTCAACGCGCCCTGCAAgctacagcgccatctagtgtcGCATCGCACCGACAAGTTCGCTCTACGgTACGAATGCCCAGTCTGCGCTCACATGTTCCACACTAAGTACCACGTGCAAATGCATCTGCAGACTCATCAGAAGGAAGGACTTATCCTAGAAGAAAACCGCAACGAGATCTTAGCGATGGTTCTCCAAAACGCACGTAAGATTCCGAAGCAGACCGGTACTTCAACCAACAATCTATCGGACCTCATACCCTCCGACGAGCGGTCTCGCGTCTGCAATATTTGTGGAGAGGTATTCCAACACTTCTACTACCTAGAAGAACACTTAAAAGGCCACGGCTCTCGCATAGCCCTCGAAGACATAACGAAAcctgaagaaaaaaaacacgtttgtcAAGATTATAATTTTAGATTGGATAAAGCATATTCGTCTATGAATTCTATGTCTATGATGAGTCAGCAAAGTATTTAG
- Protein Sequence
- MNQNMSMDMDPLSTYDYPAYNSYHPGPVNNLPNIPYQYNVKVEPVINQEFFNNFLHNVTESNEEKVLTNLNDTTNSSTKQPNIDDNIKPEIQPVIQKNVKKEKKTGKRSSYWSEKITDDGFKFYGCSMCNISFSTLMELDQHVTIHKDRITSYDLKLKNLIRRKKLKKEQKKLKKLKKIKKEDTFEIPEIKPEDGYIGNEKATEFNGENQNNLVSNSTGDQQDIKPSDCKENNDGNASNGGNSSNDPDLAGTDKQSLLNLEKIYKCFACQKQFTLSYYLKLHVRSHTDEKPYTCSVCGQSFITASKLGRHNKRIHLAIRYQCRICYRFFSKFENLTTHFDKKHADDKLEGEPYDYNAILPYLKELEEQLREKAEAETKPKTELWDELWGPMPDPPLEEVKPPKDEEDSKNFDLDFKRAEPLDILIEEVKLDADVEVKKEVEELPEVEAFNDDFRADDDLRADDDFRVDDEAKAGDGDSLKDERYSDDDYFPSNTWAASPRLQEAPPSPMRTRRSKGEGPLKCDVCSKSISTVSYMRVHMRTHTGEKPFKCYVCKRGFITSSKMHRHVLTHNETWEGDEAPVKLEEIKPDLSDDDETLDKVSRIKKAKAKFNRKTPPSGDKPKKYKKRPHACEFCHKRFLHMETLLIHKKSHEGEELVMKCNFCLETAPDEPSLREHEATHTGPKPYLCTVCGKSYKKRETMVYHRKHHKADKDYICNVCSKRFNAPCKLQRHLVSHRTDKFALRYECPVCAHMFHTKYHVQMHLQTHQKEGLILEENRNEILAMVLQNARKIPKQTGTSTNNLSDLIPSDERSRVCNICGEVFQHFYYLEEHLKGHGSRIALEDITKPEEKKHVCQDYNFRLDKAYSSMNSMSMMSQQSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -