Basic Information

Insect: Udea ferrugalis
Gene Symbol: -
Assembly: GCA_950022985.1
Location: OX465525.1:1681430-1686048[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.025 2.3 9.7 3.8 3 23 37 57 35 57 0.96

2 14 0.00046 0.044 15.1 2.0 1 23 95 118 95 118 0.95

3 14 0.00048 0.046 15.1 2.3 1 23 120 142 120 142 0.97

4 14 2.9 2.8e+02 3.1 0.6 1 23 151 173 151 173 0.78

5 14 0.85 81 4.8 0.0 1 20 178 197 178 200 0.69

6 14 1.6 1.5e+02 4.0 3.0 1 19 259 277 259 281 0.79

7 14 5e-05 0.0047 18.2 0.2 1 23 287 310 287 310 0.95

8 14 0.0012 0.11 13.8 2.9 1 23 320 343 320 343 0.97

9 14 0.015 1.4 10.4 0.2 2 23 349 372 349 372 0.95

10 14 0.17 16 7.1 2.5 3 23 379 399 377 399 0.96

11 14 0.004 0.38 12.2 0.3 1 23 404 426 404 426 0.97

12 14 1.4e-05 0.0014 19.8 1.0 1 23 432 454 432 454 0.97

13 14 9e-06 0.00086 20.5 1.5 1 23 460 482 460 482 0.98

14 14 0.005 0.47 11.9 4.8 1 21 488 508 488 511 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.025	2.3	9.7	3.8	3	23	37	57	35	57	0.96
2	14	0.00046	0.044	15.1	2.0	1	23	95	118	95	118	0.95
3	14	0.00048	0.046	15.1	2.3	1	23	120	142	120	142	0.97
4	14	2.9	2.8e+02	3.1	0.6	1	23	151	173	151	173	0.78
5	14	0.85	81	4.8	0.0	1	20	178	197	178	200	0.69
6	14	1.6	1.5e+02	4.0	3.0	1	19	259	277	259	281	0.79
7	14	5e-05	0.0047	18.2	0.2	1	23	287	310	287	310	0.95
8	14	0.0012	0.11	13.8	2.9	1	23	320	343	320	343	0.97
9	14	0.015	1.4	10.4	0.2	2	23	349	372	349	372	0.95
10	14	0.17	16	7.1	2.5	3	23	379	399	377	399	0.96
11	14	0.004	0.38	12.2	0.3	1	23	404	426	404	426	0.97
12	14	1.4e-05	0.0014	19.8	1.0	1	23	432	454	432	454	0.97
13	14	9e-06	0.00086	20.5	1.5	1	23	460	482	460	482	0.98
14	14	0.005	0.47	11.9	4.8	1	21	488	508	488	511	0.95

Sequence Information

Coding Sequence: ATGGCCGCTCTTTCTAAATGGGTCCCAGTGGGGGACTCTACAGAAAAATCTGAGAATATAATGAAGCCTCCCAAGCTCACTACTATTGACAAAATTGGTGGTATTTTCTGCCACATTTGCCATGTAACATTTGGAAATAAAAAGGATTTTGACAGCCACTACATAAAACATAGTACAGGCAGTACAGATTTTGTGTACACATGTGTACAGTGCCGCAAGGAGATTGTTGGCTATCCAAGCTTTCGTGGACACTGCTACTTGCAGCATATCATGAAAGATAAATTCAAGTGTGAGCAATGTGACAAAGTTTTTTCCAAACTTTGTGTCCTCAAAACCCATGTGAAAGCTGTACACCAATATAAATGTCCCACTTGCAAGCATGAatttcaaacccaaaaacaaCTTGCAATGCATCAAATTCTTCATAAAAATGACCAAAATGCCCCACCATATGACTGCCAAAACTGTGGCAAGCAGATAGACAGCACCGATGAATGTGAGCTGCACATAGAAGACCATAGCCATATGTCATACTCGTGCCCTATTTGTGACGAGTCAATAGCTGAAATCACCGATGCTGCTAGTCACCTGACCCAGCATTTTGGTGACATACTTATTAATGAGCCAGATGTGGATGAAAGCCCCGAAATTACCAACGACAGTTCGATAGACCTACTCGGTGGTATATTCTGCTGCCACTGTGAGCAGATTTATAAAGCCAGACCAGAATTTGATAACCACTTCAGTCTAGAACACCCCGATCAACCTATTGTGTATGCCTGCAACATCTGCGGTAAAGAATAtgagaaatattttgtttttgccaATCACTGCTATTATCATTACTCCAAAGGCAGATTCCAATGTGAGGTGTGCTTCAAGCCGTTCCCGCGCCTGTCGCTGCTAGTGACGCACATGGAGGCCTACCACGCGGACGGACGAGAGGTGGCGTACCCGTTCAGCTGCCTCGAGTGCGACCACGGGTTCAAGTCCCAGCGCCGGCTCAAAGACCACTACCGCATCTCGCATAATATAGTCTACAACCGGTGTCCGGAGAAAGACTGCATGAAAATTTTCGACACATCCAAAGATCTGGCCATCCACTTGAAAGAGCACAAGCGTACCGACACATTCTGCCGCACTTGCGGGCTGCGCTTCAGCTCGCTGACTGCCTGCGAGAAGCACCTGCAAGTCCACCGCAAGAAGGCCTACAGCTGCCCTGTGTGCAGCCGCAGCTACGGCGAGAAGTACCTCGTCATGAAGCACGTCAACCAGCACTTTTCATCTGTGCTGCACATTTGCAATATCTGTGGCAAGGTGTACAATGCCCGCTCGCGTCTCAACAACCACATGAAAGTGCACAACGAAACCCGCGAGCACACTTGCAGCTTCTGCGGCAAAGGCTTCACCAAGCCGTACCTGCTGTCTCAGCACATCAATATCCATACAGGCCTCAAGCCGTACAAGTGCACCGTCTGCCCGAAAACCTTCGCGTGCCAACCGAACCTCACGAAGCACCTCAAATGCATGCACAACATCAACAAAATCGACCTCAAGCTGTGCTATAACCCAAATTTCTCGACGAAAACGCCCAATCCAAGACCGAACACGAAAATTGAAAGGATAAAGTTCGAAACAAACGAAGAAGTTTATGATGATTCGATTGAAATACCTGATAACAATAATACAGGAGATGtagtagaaataataaaaaatcctacCAACGAAACATCTTCTGAAGTGTATGCCGCCCATAGTTTTGAAGAAACAGATGATTGGAAGTCTGACACTATAGACCCAAATGTGATGAAGATGCTGGAggaaaatatcaataatatcgaTGCTATTAACGCCAATAACGAAGATATCAGCGAATTAGAAAATGCTCTCTGGGCGCCGAGCCCGAGTCCAATGATACCGGCAGTTTCCGCTAGCGAGTACCTCCTCTCGCCCGTGGAATCAGCGTACGTCCCGCGCGAATACGGCCCAGAGTTCGTGAACACGGGCCCCGGCGCCGAGCTCGGCCCGGGCGGCGAGTACATCCACCTGGACGACCACCTCCTCCCGCACATCGACCCCCGGCTCACCGTCACGAACCCCCCCGGGGCCCCCCAAGCCTGGGAGCCCCCCGTCTTCACCAAGGTCTACCAGGAATACCCCGACCTCTCCGACGTCAGGTATTCCATGTTGAACACCGACATATTTTAA
Protein Sequence: MAALSKWVPVGDSTEKSENIMKPPKLTTIDKIGGIFCHICHVTFGNKKDFDSHYIKHSTGSTDFVYTCVQCRKEIVGYPSFRGHCYLQHIMKDKFKCEQCDKVFSKLCVLKTHVKAVHQYKCPTCKHEFQTQKQLAMHQILHKNDQNAPPYDCQNCGKQIDSTDECELHIEDHSHMSYSCPICDESIAEITDAASHLTQHFGDILINEPDVDESPEITNDSSIDLLGGIFCCHCEQIYKARPEFDNHFSLEHPDQPIVYACNICGKEYEKYFVFANHCYYHYSKGRFQCEVCFKPFPRLSLLVTHMEAYHADGREVAYPFSCLECDHGFKSQRRLKDHYRISHNIVYNRCPEKDCMKIFDTSKDLAIHLKEHKRTDTFCRTCGLRFSSLTACEKHLQVHRKKAYSCPVCSRSYGEKYLVMKHVNQHFSSVLHICNICGKVYNARSRLNNHMKVHNETREHTCSFCGKGFTKPYLLSQHINIHTGLKPYKCTVCPKTFACQPNLTKHLKCMHNINKIDLKLCYNPNFSTKTPNPRPNTKIERIKFETNEEVYDDSIEIPDNNNTGDVVEIIKNPTNETSSEVYAAHSFEETDDWKSDTIDPNVMKMLEENINNIDAINANNEDISELENALWAPSPSPMIPAVSASEYLLSPVESAYVPREYGPEFVNTGPGAELGPGGEYIHLDDHLLPHIDPRLTVTNPPGAPQAWEPPVFTKVYQEYPDLSDVRYSMLNTDIF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -