Ufer011792.1
Basic Information
- Insect
- Udea ferrugalis
- Gene Symbol
- zfpm1
- Assembly
- GCA_950022985.1
- Location
- OX465525.1:2008812-2017547[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.8 4.5e+02 2.5 0.3 2 23 6 27 5 27 0.95 2 13 0.025 2.4 9.7 2.1 1 23 1010 1033 1010 1033 0.92 3 13 1.7e-05 0.0017 19.6 1.7 2 23 1161 1182 1160 1182 0.97 4 13 0.00014 0.013 16.8 1.1 1 23 1188 1210 1188 1210 0.98 5 13 8.3e-05 0.0079 17.5 2.2 2 23 1217 1238 1216 1239 0.95 6 13 2.4 2.2e+02 3.4 2.6 5 23 1252 1270 1250 1270 0.97 7 13 0.021 2 9.9 1.1 3 23 1277 1298 1276 1298 0.96 8 13 0.019 1.8 10.0 0.2 2 23 1314 1334 1313 1334 0.96 9 13 0.00049 0.047 15.0 1.2 1 20 1340 1359 1340 1362 0.90 10 13 0.0044 0.42 12.0 3.2 1 23 1370 1392 1370 1392 0.99 11 13 0.0059 0.56 11.6 7.2 1 23 1398 1420 1398 1420 0.98 12 13 6.8e-06 0.00065 20.9 1.3 1 23 1426 1450 1426 1450 0.98 13 13 0.00072 0.069 14.5 4.6 1 23 1456 1478 1456 1479 0.95
Sequence Information
- Coding Sequence
- ATGGATCTACTCGTGCAGTGTCCCGTGTGCACGCTTTACCTGCACAATGGGATGACCCTAGAGTCTCACCTTGACACCCATCCCAAAGACCAGGTTATAAAAGCTTTATGCAGTCTAACTACAACTAAAAGTAGCAGTGGCAATTATGGCAGTAGAACATCAACACCTATGCATTCAGAACGATCATTCAGAAGTCGATCAAGGACCCCTGCCACAGATGATAGGTGGGCCAATTCACATCGAAGTAGTGACAATGAGCGCTACTGGCGTAGAACACCTAGCCGGACTTCAAAATCAAGCCAACTGTTACCAAGCCCCCGCAATGGTACACCAGACATTAGAATTGGAGACATAAACTTTGAGAATAACATTAATAGTGCAGCTCAGTTTCCTGCATCCTCATATCCCGTAAAGTCCCCCAAAACACACCAGACATACTCCAATACATCAACAGGGCCTGTAGAATTTGAACAGCCGTATGCATACTATCAAGATACAAGTGATGATAGAGAGATAAAGTACTCAAGAAGTGCTGAATACAACCCTATAGATAGCAATAGTGCCATCTTTACCCATAAATCGCGATCACTCACCCCAGGTGCTAAGTTACAAGCAGCTTTGCTGCCTGCAGGTCCAGGACCAGGGACTGATAGTCTTGTGAAAATGTTACCTAAACCAAATAATATACTTGTAAAGACCAGTATGGGGGGTGTGCAATACATGGCCCCTGGAGCGAAGCCCATGCATGTTATGGTTCCCACAACTCCAACATTTGTTCAGAAGAATCTACAAAACAATATGATCATGACGGGTGGGCTTCCTGGAACAACTATGGTTGAGTCAAAGACTATGGGGGCTTTGCCTACGAACCAGTTTAGCCAGTTGACAAGTAGTACCTTTACACCAGGAACAACAGTAGTACAAAACTCACAGTTTATCTATAGGGAAATGGTGCATAATATTGATGGTAAACGCTTCATTTCTTGTGTGCCTCCAGTTCTTAGTCATGAGAATGTCACTAATGTGGCTCAGGGGACTTCAATGTATCAGAATTTGATGGTTGTAGATCAGCTAAGGAATGCACCATGCATGTATACTACCCCTCAGACAATCATACCAAAGCCTTGTACAGGATCAGTTTATAGTGAAGTCCTGTCCCATTTGCCCAGCAGTACCACATCTAATATAGATAAGGCCCCTCCTATACATGACATTAATAAAACTCTTATAATTGAAGTGGGTCCAATTGTCCCACCATCTGAAATGTCTGCATCGAGACACCACAACATGACAACACAGACTGATGCAGACGTCATTAAAGCCAGCAAAATTGAGATCCTTCCCTTGGAGAAATTTGAAAAGAGTGAGACTCCAGGGTCAAGTAAAGGCTTGAAGATCCTAAGCAATATTAAAGTAGAAGTTCCAGTTCAACATCATAAGAATATGCTTAACACTGTGATGGATCTCACTGGGTCCAGTGAGTCTGATTACCCAGTTAGGTCAGTGACCCCTGAGAAAATTCTACCTGATTTAGATGACAACAATCAAACATcaaatgaaggcacacagccatCAATATCTAGCAGTGATAGTGTGGTCTCACATACTTTCTCcgtgataaaaaatattggtaaTCCACCAAGCTACAAAGATTCTTCTGCCAAGTCTAGTGGGGTTGACAGTAAAATAGAAATGGAATCTTCAGATAGTTGTCCTGTCCCAGATTTAATATGTAATGAGAAACCTTCAATATCACCGTGTAGCGAATTATCAGACAATGGAGAGAATTCTTCTGATCGTGCTTTAATATCTACCTCGGTTTTGCCTAGACCTCAAGCAAGCCAGTCAACTAGCCTAGATACCAATGTTGATAAAAGAAATCTTTCACAACCTAGGCCATGTAGAAATAACACACTGAGATTGAATAACATTTATGTGAAAAAGCACAAAAaagtattacaaataaaaaacgcCAAGCCGTCCACTGCCAGTACAATACCAATTCACTGTGAAATTGAGCCTAAACCTTCATCTTCCACATGTAGATCACCTGAGTATTTCTCAATGAGCAAAATCAGCAAGGATAGGTGTGATAAAAGAGAAAAACCCACATTACAGACTATTTCAGTTGAAATTGATGTGTCTCCTGATCTTGATAACCATGACTTTGATGCTGATACTGAAGAGCAGTCTATGGACCTCGAGCCTGTTGCACCATCAAAAGTGGAAAGTGCTGATCAGTTCACAACTAGCATAGACGTAGTGCAGGTCAAGGAGGAGGTTAACACAAGCAACGAGGAAGGTTACAGCAACGAAAATAGCTCAAACCGCGATTTGACTTCACTAAAGTCGCTGCGTCCAATCAACGTAATTACTTACGGAAATATGCCACCTGGAGACTTCGAGGACGAATCAAATCACCGGGAGTTGCTGGAACTGGAGGCTGCatccaaaaataacaaattcgtGAACATGATCAATGAGAATTACTTCGGAGATAACATCTACGCGGATTATTTCACACCAGACAGAGTGGAGTCCTTCGATTCAGAGCGTGAACCGTCTTTCCCGAAGGAGGTCCCCAAGGATGGTATGTATGGCATGTGGGGGACTGGGGAGCCTTCACACAAGGAAAGCGAATTCGTTCTTCCGAATTTCATTCATGAAAGCTACAAGATAGCTGAGAGTAATGGCGTAGACTATGATGTAGTTAACCGAGAGGGTAATGATGTGGAAGAGGAGGGGTGCGAGCGGGACTGCAAGGTGGACGTTATGAGTGAGAGCCGCAGCGAGGGCGAAGCACCCATGAATATCTGCGCCGACGAGCGCATGCCGCCGCGCGGGGAGTTGAGCGGCCAGGAAAGCAACGGGGATATGGAGTCGCCTTGGATGTACACGGACGTGCCACCAGCGGAGCCTTACGACTTGATCGCACGCGAGAGCTGGGTCTCTGACGGGTCAGACATGGATTCCACTGAAAAACGGGACAATTTAGAGGAAGAGCTCCAGTTCCCCAAAGGTCGCAGCCACGTGTGCAACGTCTGCGGCTGCAAGTTCCCCTCCCTGCGCGAGATGCGCGCGCACAAGACGCAAGCGCACACGCTGCCCCTGCTGCCGGCCCTGCCGCCCCTGCCGCCCCCGCAGACCCTGCATCCGCCCCTGGTGCcgctgctgccgctgccgaCCGCCTCCAGGACCAGCTACAGCAGGATGCTGACGGCTAAGATTATCAAAAAGGAGGAGAAGGTGGATGAAACAACTGTGCTGGCTGGCTCGGCCATGCTAGCCCTGGACTCCAAAGAGTCGATAACCACAAGCATGCTGCAAGCATACGACGGTCTCGAGGAAGCCAAGCCAAAGCTCGAGTTGATCAAGCAAGAACCGAAGCCTCGGAAGAAGCGCGACTACGTCTGCCCCACCTGCAAGGAGGACCAGCTCACCGAGGTGGCCTTCCACGAGCATCTCAAGATACATCCGCTGGAGTGTCTCACGTGCGGGAAGTGCTTCTTCCGACGGGCTAACCTGGCGCTACATATCAAGACGCATTTGGGGATCAAGAATTATAAATGCGAGGTATGCGAGAAGCGGTTCATCACCCGCCAGAAGCTCCAGGAGCACAGCAACATCCACACCGGCCGGACGCCCGTCAAGTGCACAGTTTGCGACGAAACCTTCCGGAGATACTCCAATATGATGGCTCACAGAGACCGCCACCACTTCAAGAAGAAAGCGAAAGTGCGCGACTTCGTCTGCCACTGCGGGTCCGTGTTCCATTCCCGGGCGAAGTTGCTTTGGCACAAGGAAACGCACGAGGAGCGTCCGAAGGCGTGCCTGTACTGCAGCGACAAGTTCGTGCACGCGGCTTCGCTTACACGCCACGTGCGGCGCACGCACAACGTGTATTACGTGCCGATGGCGCGCAAGAACCAGGAGAACTTGCCTTGTCCTGTCTGCAAGCAGATGTACTTACGCACAAACCTGCGCGCGCACCTCTTAACTCACAGCGGCAAGCGCCCCTACACCTGCATCATCTGCAACAAGTCCTTCACCACCAAATGGAACCTCAAACTGCACCGATGGACCCACATGAGTCGCTCCACGAAACCCTTCAAATGCCACCTCTGCAAAGGCGCCTTCATCCGCCACGCCGAGTTCGTCTCACACATGAACTCACACAAGTCAGTTCGGCCCTACACTTGCAACTACTGTGGATGCCAGTTCATTAGGAAATACAACTGTCAACGGCACGTCCGCGAACACCAGCAAGCGAAGAAATACGTTTGTAAAGTTCCAGAGTGCGGTAAGTCGTTCCATAGAAGTTACTACCTCAGCGAACATATGAAGGTGCACAGCGGAGCGAGGCCTTTCGCCTGCAATATCTGCGGGAAGACGTCGAGTAATAAATCGAATCACAATAAGCATTTGAAGATACATCACGCGCGAGAACCGGTCGCTACCGAAGCGTAG
- Protein Sequence
- MDLLVQCPVCTLYLHNGMTLESHLDTHPKDQVIKALCSLTTTKSSSGNYGSRTSTPMHSERSFRSRSRTPATDDRWANSHRSSDNERYWRRTPSRTSKSSQLLPSPRNGTPDIRIGDINFENNINSAAQFPASSYPVKSPKTHQTYSNTSTGPVEFEQPYAYYQDTSDDREIKYSRSAEYNPIDSNSAIFTHKSRSLTPGAKLQAALLPAGPGPGTDSLVKMLPKPNNILVKTSMGGVQYMAPGAKPMHVMVPTTPTFVQKNLQNNMIMTGGLPGTTMVESKTMGALPTNQFSQLTSSTFTPGTTVVQNSQFIYREMVHNIDGKRFISCVPPVLSHENVTNVAQGTSMYQNLMVVDQLRNAPCMYTTPQTIIPKPCTGSVYSEVLSHLPSSTTSNIDKAPPIHDINKTLIIEVGPIVPPSEMSASRHHNMTTQTDADVIKASKIEILPLEKFEKSETPGSSKGLKILSNIKVEVPVQHHKNMLNTVMDLTGSSESDYPVRSVTPEKILPDLDDNNQTSNEGTQPSISSSDSVVSHTFSVIKNIGNPPSYKDSSAKSSGVDSKIEMESSDSCPVPDLICNEKPSISPCSELSDNGENSSDRALISTSVLPRPQASQSTSLDTNVDKRNLSQPRPCRNNTLRLNNIYVKKHKKVLQIKNAKPSTASTIPIHCEIEPKPSSSTCRSPEYFSMSKISKDRCDKREKPTLQTISVEIDVSPDLDNHDFDADTEEQSMDLEPVAPSKVESADQFTTSIDVVQVKEEVNTSNEEGYSNENSSNRDLTSLKSLRPINVITYGNMPPGDFEDESNHRELLELEAASKNNKFVNMINENYFGDNIYADYFTPDRVESFDSEREPSFPKEVPKDGMYGMWGTGEPSHKESEFVLPNFIHESYKIAESNGVDYDVVNREGNDVEEEGCERDCKVDVMSESRSEGEAPMNICADERMPPRGELSGQESNGDMESPWMYTDVPPAEPYDLIARESWVSDGSDMDSTEKRDNLEEELQFPKGRSHVCNVCGCKFPSLREMRAHKTQAHTLPLLPALPPLPPPQTLHPPLVPLLPLPTASRTSYSRMLTAKIIKKEEKVDETTVLAGSAMLALDSKESITTSMLQAYDGLEEAKPKLELIKQEPKPRKKRDYVCPTCKEDQLTEVAFHEHLKIHPLECLTCGKCFFRRANLALHIKTHLGIKNYKCEVCEKRFITRQKLQEHSNIHTGRTPVKCTVCDETFRRYSNMMAHRDRHHFKKKAKVRDFVCHCGSVFHSRAKLLWHKETHEERPKACLYCSDKFVHAASLTRHVRRTHNVYYVPMARKNQENLPCPVCKQMYLRTNLRAHLLTHSGKRPYTCIICNKSFTTKWNLKLHRWTHMSRSTKPFKCHLCKGAFIRHAEFVSHMNSHKSVRPYTCNYCGCQFIRKYNCQRHVREHQQAKKYVCKVPECGKSFHRSYYLSEHMKVHSGARPFACNICGKTSSNKSNHNKHLKIHHAREPVATEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -