Basic Information

Insect: Udea ferrugalis
Gene Symbol: -
Assembly: GCA_950022985.1
Location: OX465541.1:8918173-8925272[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.25 24 6.5 2.4 1 23 193 216 193 216 0.98

2 11 9.7e-06 0.00092 20.4 0.7 1 23 238 260 238 260 0.98

3 11 1.1e-05 0.0011 20.2 0.1 1 23 266 288 266 288 0.97

4 11 0.13 12 7.4 0.4 2 23 294 315 293 315 0.96

5 11 0.00016 0.015 16.6 1.7 1 23 322 344 322 344 0.98

6 11 0.03 2.9 9.4 0.7 1 23 350 373 350 373 0.95

7 11 0.024 2.3 9.7 2.8 1 23 382 404 382 404 0.98

8 11 0.0013 0.13 13.7 0.8 1 23 410 432 410 432 0.95

9 11 4.1e-06 0.00039 21.6 3.0 1 23 438 460 438 460 0.98

10 11 6.3e-06 0.0006 21.0 0.7 1 23 466 489 466 489 0.97

11 11 0.00028 0.026 15.8 3.6 1 21 495 515 495 516 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.25	24	6.5	2.4	1	23	193	216	193	216	0.98
2	11	9.7e-06	0.00092	20.4	0.7	1	23	238	260	238	260	0.98
3	11	1.1e-05	0.0011	20.2	0.1	1	23	266	288	266	288	0.97
4	11	0.13	12	7.4	0.4	2	23	294	315	293	315	0.96
5	11	0.00016	0.015	16.6	1.7	1	23	322	344	322	344	0.98
6	11	0.03	2.9	9.4	0.7	1	23	350	373	350	373	0.95
7	11	0.024	2.3	9.7	2.8	1	23	382	404	382	404	0.98
8	11	0.0013	0.13	13.7	0.8	1	23	410	432	410	432	0.95
9	11	4.1e-06	0.00039	21.6	3.0	1	23	438	460	438	460	0.98
10	11	6.3e-06	0.0006	21.0	0.7	1	23	466	489	466	489	0.97
11	11	0.00028	0.026	15.8	3.6	1	21	495	515	495	516	0.95

Sequence Information

Coding Sequence: ATGACTGATATTCATAATTTGGACATTTGTCGGCTGTGTCTATCTGCTGAAATCAGTAATTTACACACGTATTCCCTGTTGGACGAACCGGAGATATTGCAAAAAGTTTTGTGTTGTTTACCTATTATTATTACAATAGAAGAAAGCCTTCCAAAAAAGATATGTGTTGACTGTTATAGTATAATAGAGATAATTCATAAGTTCTATCAGAAAGTGACTGAAAACGATCAATTACTGAAAAATGCAATTAAGAATAAAGAACTTAATAATCTGCATCTAAGTCCGCCAAAATTCAACTTGAAGGTTAAAGAAGAAAATGAATCtacaaatattgaaaattgttcaaatagtgaaaatataaaaccaaaaatagaaatattatGCACTGATGATGCCGATTTAAGTCCTACTCAATCTGACTGTGAAGAAGAAAAACCTGTGATTGAATTAGCAGAAAATacacaattcaaagaaaatcatTTCAATGAAACATCAATAGAGGAcactgtaaataaaaatgaaaccaATTTAGTTCTTAATGAGAAAACAGACTCATTAAAtgagaatataaataaattcaaatgtcTGACATGTTTCGAGCTCTGTGATACTAAAAATCTACTACTTATACATTACAACACAATACACAATCCAGAAAAAGGTGTAAAAGACATTATGTATGAATGTGTAACATCTGATGGTAAAAAAGTGTATAAATGTAAAGTTTGTGGTAAAATATACAataacaagaaaaatatttctagaCATGTCATAGTACATGGTGAAGAAAGgccttttatttgtaaaatttgtgGCAGAACATACAGGTCAGCGTCGGAGATCATTCGCCATGCGCGCGCGCACGACGGCACAAGGTTGCATTGCCGCATTTGCGCGTACAGTACGGCGTACCGTGGCGCGCTTGCATTGCACGAAAGGCGACATGACAGCAAGCTCTataagTACAATTGCGAGCATTGCGGCAAAGGTTTCCAGGTGAAGACGTGGTTCCTCCAGCATCAGAACATCCACACTGGTCTGAAGCCGTTCGTCTGTGACATCTGTGGAGTTGGCTTCCATATGGACAGGTACTTAACAACGCACAAAAGCTCGGTCCACCCCCAGACATCGAACCTGAAGCGTTACGTGTGCACGCACTGCTCCCTACCGTGCGACTCGCGGAATGCGTTCAATGAACACTTAAAGGAACACGGAATTAAGACCAGTTTCCTATGTGACCTGTGCGGCAAAACCTTGTCCAATGCTGAGCAACTGAAGTTCCACAAGCGGATGCATTTAGGCGTCAAGCCTTTCTCCTGCAGTACATGCAACAAGGCGTTCACAAAGAAGTTCAACCTTCAACTGCATGAGCGTACACATACCGGGGAGAAGTCCTACGAGTGTGACCAGTGCGGTAACCGCTACACGCAGCCGAGCGCACTGCGGAGACACAGTAGGAGGAATCACTCGGACGCCGATCGACACAAGTGCTCAAAATGTAGCAAAACGTTTGCAACTCAAAATCTACTCACTTCTCATCATAAATTGTGCAGTTGA
Protein Sequence: MTDIHNLDICRLCLSAEISNLHTYSLLDEPEILQKVLCCLPIIITIEESLPKKICVDCYSIIEIIHKFYQKVTENDQLLKNAIKNKELNNLHLSPPKFNLKVKEENESTNIENCSNSENIKPKIEILCTDDADLSPTQSDCEEEKPVIELAENTQFKENHFNETSIEDTVNKNETNLVLNEKTDSLNENINKFKCLTCFELCDTKNLLLIHYNTIHNPEKGVKDIMYECVTSDGKKVYKCKVCGKIYNNKKNISRHVIVHGEERPFICKICGRTYRSASEIIRHARAHDGTRLHCRICAYSTAYRGALALHERRHDSKLYKYNCEHCGKGFQVKTWFLQHQNIHTGLKPFVCDICGVGFHMDRYLTTHKSSVHPQTSNLKRYVCTHCSLPCDSRNAFNEHLKEHGIKTSFLCDLCGKTLSNAEQLKFHKRMHLGVKPFSCSTCNKAFTKKFNLQLHERTHTGEKSYECDQCGNRYTQPSALRRHSRRNHSDADRHKCSKCSKTFATQNLLTSHHKLCS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -