Basic Information

Insect: Udea ferrugalis
Gene Symbol: -
Assembly: GCA_950022985.1
Location: OX465531.1:14156324-14175881[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0035 0.33 12.3 1.2 1 23 298 320 298 320 0.98

2 12 6.1e-05 0.0058 17.9 2.4 2 23 328 349 327 349 0.94

3 12 0.077 7.3 8.1 1.4 1 23 353 375 353 375 0.97

4 12 0.00041 0.039 15.3 0.9 1 23 380 403 380 403 0.98

5 12 0.00062 0.058 14.7 0.1 1 23 407 430 407 430 0.95

6 12 0.08 7.6 8.1 0.1 3 21 449 467 448 472 0.91

7 12 0.00075 0.071 14.5 1.6 3 23 482 503 482 503 0.98

8 12 0.0075 0.72 11.3 0.4 3 23 537 558 536 558 0.97

9 12 9.9e-06 0.00094 20.4 0.5 1 23 569 591 569 591 0.98

10 12 1.9e-05 0.0018 19.5 1.8 1 23 597 619 597 619 0.99

11 12 0.011 1.1 10.8 2.5 1 23 625 647 625 647 0.98

12 12 5e-05 0.0047 18.2 0.2 1 23 653 676 653 676 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0035	0.33	12.3	1.2	1	23	298	320	298	320	0.98
2	12	6.1e-05	0.0058	17.9	2.4	2	23	328	349	327	349	0.94
3	12	0.077	7.3	8.1	1.4	1	23	353	375	353	375	0.97
4	12	0.00041	0.039	15.3	0.9	1	23	380	403	380	403	0.98
5	12	0.00062	0.058	14.7	0.1	1	23	407	430	407	430	0.95
6	12	0.08	7.6	8.1	0.1	3	21	449	467	448	472	0.91
7	12	0.00075	0.071	14.5	1.6	3	23	482	503	482	503	0.98
8	12	0.0075	0.72	11.3	0.4	3	23	537	558	536	558	0.97
9	12	9.9e-06	0.00094	20.4	0.5	1	23	569	591	569	591	0.98
10	12	1.9e-05	0.0018	19.5	1.8	1	23	597	619	597	619	0.99
11	12	0.011	1.1	10.8	2.5	1	23	625	647	625	647	0.98
12	12	5e-05	0.0047	18.2	0.2	1	23	653	676	653	676	0.98

Sequence Information

Coding Sequence: ATGGAGGAAATAAGAGCATGTAGAATATGTCTGATTACGGGAGTGCGTATGAACGATTTGCGATGCTTTCCTTTACTGAACTATTTTGAATCTATAAATGGGATGAGTCCACTAATAAATATGGATCTGCCTCCCTATGCATGTTATGAATGTACTGCATACATAAGGAAGACTTACTGGTTCCGGGAGAGATGTGTGCGGGGACAGGCGGCATTATACAACATGCTAAGTGACACTGGAAAGATCACTGAGCAAAGTATTAAAGAAATTGATAGATTGCATTTAGATCTCAATtcaaacatgaaaataatatttttgaataattcaataaatatgATGCACAATGAAGAACTAGTGTATGGTATAAAATATGAAGATGATTTCCAAAAAGAGGAAGAAGCTGTACAGGGAGAAAAAGGAGAAACATATTTAGACTTTTTTAAAGACGAGTTAGATTTCACTGACCTAGGTTCACCAGCACAGGTTTCTAGTGATGAAGACAATGAACCCTTGTCGGTTCATAAGAGCAATAAAGAAAAAGATGTGAAACAGAAAGTAGTAAAGAAGAAGGGAAAGAAAAGGAAAGATCTAACTATAGAAAAAATTAAGTATGCAGATGTGACAGAAAGTGAAGGTTTTGAGACGGAAGATGTGAAAAAAGAGTGTACAGAAGCACCGGAACAGCGCAGAAAGCGAGGTCGACCTCGCAAGGACGAGGTCGTGCGGTCCGTCAAGAAGGAGCGCCCTGAACGACGCACCAAGAACACTGGCGGCGTGGACGACAACGATATTGATCTGGAGGAGTATGTCACCATAATCAAACTCACGAAAAAGGAACAAATGGATGAGATTGAGAAGAGGAAAGAGTCGTCCAACTACTTGAACGCGCCGTACAAATGCAGCCTCTGCTTCAAAGGGTTCATCGACACCGCCGCGTGGCAGCACCACGTCAGCAAACACCAACCGACCCCGGGCGACATGGAGTGTCCTATCTGCAAGTTCCGTTTCAAGACCAAGCGCAACTTGCAGAAGCACAGCTCCAACCACGAGAAGAAATATGCTTGCAAATCCTGTTCCTACGTCTCTAAGACTACAACTCAAGCAAAACAGCATCAAAGGTGGCATAAAGGTGTTACGTACAAGTGTCAGTACTGTGACGAAGTTTCCACCAAGTGGACGTCCTACCTGAGCCACGTGCGCATCAAGCACCCGTCGGAGTTCATCTGCGGCGTGTGCGGCTACTCCTTCGTGAGCCAGCTCGGCCTCAACATGCATCGGACCATGATGCACAAACACGTCAAGGAGGAAAAGGAAGAGGGAGACAAAAGCGAGAGCGGTCCGTACTGCGCCGTGTGCGACGTGAAGTTCGTCGGGCTGGAGGCGTACCGCCGCCACATGGTCACCTCCGTCAAGCACACGCAGAACAATGACTTCAAGAACGGTTGTCGAGTGTGCGGCGAGACGTTCTCGAACGGCGAGGAACTACGTCTGCACCACCGGCGCTCGCACGCGCGCCAGAGACCCAAGAACTACGGCAAGAAGCCCGCCAACGCCGCCTGGCCCGCCGACTGCGAACATAAGCCCGCCAACGCCGCCTGGCCCGCCGACTGCGAACATTGTGGTGAGTCGATAGCGAACGCACGCGACTTCTGGACTCACTTCAGGCGCGCTCACCCTGACAAGCCCTACCCCATTCAGAAGAACTACATCTGCGACATTTGTGGCAAGAGTTTCCGGGGCAACGCATTCCTAGTATACCACAAGCGCACTCACACGGAGGAACGCGCCTACAAATGCCTGCAATGCCCGAAGGCGTTCTTCAACCGGACCAACCTGCAGATGCACGAGAAGACGCACTCCGACCACCGGCCCTACCCCTGTAGCGTCTGCTTCAAGGCCTTCAAGTGCAAGGGCGCTCTGGATAGACACTTCAGGAGCCACACTGGCGTGAAGCCGTACGAATGCGAAGTGTGTGGGAAGGCGTTCGGCCAGTCCAACAGCCGCAAGCTGCACGTGCGCACCGTGCACCTCAAGCAGCCCGCGCCCTACATCAGCCGCGCCCGGCAGGAGCGCCGCACCAAGCCGCCCAAGGAACCAAGCCACGCTATATACTAG
Protein Sequence: MEEIRACRICLITGVRMNDLRCFPLLNYFESINGMSPLINMDLPPYACYECTAYIRKTYWFRERCVRGQAALYNMLSDTGKITEQSIKEIDRLHLDLNSNMKIIFLNNSINMMHNEELVYGIKYEDDFQKEEEAVQGEKGETYLDFFKDELDFTDLGSPAQVSSDEDNEPLSVHKSNKEKDVKQKVVKKKGKKRKDLTIEKIKYADVTESEGFETEDVKKECTEAPEQRRKRGRPRKDEVVRSVKKERPERRTKNTGGVDDNDIDLEEYVTIIKLTKKEQMDEIEKRKESSNYLNAPYKCSLCFKGFIDTAAWQHHVSKHQPTPGDMECPICKFRFKTKRNLQKHSSNHEKKYACKSCSYVSKTTTQAKQHQRWHKGVTYKCQYCDEVSTKWTSYLSHVRIKHPSEFICGVCGYSFVSQLGLNMHRTMMHKHVKEEKEEGDKSESGPYCAVCDVKFVGLEAYRRHMVTSVKHTQNNDFKNGCRVCGETFSNGEELRLHHRRSHARQRPKNYGKKPANAAWPADCEHKPANAAWPADCEHCGESIANARDFWTHFRRAHPDKPYPIQKNYICDICGKSFRGNAFLVYHKRTHTEERAYKCLQCPKAFFNRTNLQMHEKTHSDHRPYPCSVCFKAFKCKGALDRHFRSHTGVKPYECEVCGKAFGQSNSRKLHVRTVHLKQPAPYISRARQERRTKPPKEPSHAIY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01504120;
90% Identity: -
80% Identity: -