Ufer015752.2
Basic Information
- Insect
- Udea ferrugalis
- Gene Symbol
- -
- Assembly
- GCA_950022985.1
- Location
- OX465528.1:14724648-14729147[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.2e-06 0.00012 23.2 1.0 1 23 195 217 195 217 0.96 2 11 0.00035 0.033 15.5 3.6 1 23 223 246 223 247 0.97 3 11 0.0025 0.24 12.8 2.5 1 23 256 278 256 279 0.96 4 11 0.00036 0.034 15.5 2.6 1 23 286 308 286 308 0.95 5 11 0.00058 0.055 14.8 1.3 1 23 314 336 314 336 0.97 6 11 0.081 7.7 8.0 5.6 1 23 342 365 342 365 0.96 7 11 0.013 1.3 10.5 2.1 2 23 371 390 370 390 0.97 8 11 5e-06 0.00048 21.3 5.9 1 23 396 418 396 418 0.98 9 11 2.8e-07 2.7e-05 25.2 1.5 1 23 424 446 424 446 0.98 10 11 4.6e-05 0.0043 18.3 0.4 1 23 452 475 452 475 0.97 11 11 0.00058 0.055 14.8 1.2 1 22 481 502 481 502 0.96
Sequence Information
- Coding Sequence
- ATGGCTAGcgtaaaaagtaaattaagtgCACGCAGTGCGAGTAAACGTGATTCTAAATCTGACGAATCGGTTGCAGTCATGAAAAACGCCAGCATTCTGGATACGAGCGATGATATAGAACAGTTTCTAGCACGCAACGGAAACAAAGTACCGAAACCCAATATACTTAAAAATGACaaagataaaattaagattttccCCCTACACCAAGCCAGCCTGATGTCCAGGAGTGGGCTGATCAAAAGAAAAGACCCTGAAAAGCTTAAGCTGTTCAATAACATACTCAAAAGTGAACTTCTCATCAGTGATACCGTGAAAACCAGAcctaaaaagaaacaaaatgtaaacaataacaaTGATGTTGAAACcaatgataaaaacaaaagtgaCAATGTTACAAGCAATACAATAAAATCAGCTGGTGTTTCTAAAAGAGATAAACCGAAACCCAAAAAACAAGATGCCAAAAAATCTCCCAAAAAGTTAACGGTGCAAGATACAGGTTTTATAAGCAATCCATTTAAGAATCTAAATTTGTTACGGTCTGATTCTCCAAATCCTGGGTCACCTGTGCCACCTGAATTTGAATGTGATTATTGTGGTAAAACATATAAGGTCAAAAGGAACctagaaaaacatatttatggTCACCTCAATGTGAAACCTTATCGGTGTCCCCAATGTCCTAAGAAATTCCATTATCGTGTAAACATGCAGGTTCATGTGATGAAAATACATCATGAGTTTGATGATTTGCTCGATCATTATGAGTGCCATATCTGTCAGACAGCATTTCTCATGaaggaaactttaaatgcccaTCTATCAACACATCACTCAAGAAAAGCTAGCTTCTTCAAATGCTTTTATTGTGAAAAGAAGTTTTCAGATAACATACACCTTGTAGACCACGAGGAACAGCACTTGGTTAAGGGAAAATACAAGTGCACAATGTGCGATTTGGATTACACTTCCCGGAATCAACTTGAATCTCATTTCAAAGGCCATTTAAAGATTAAAGAATACATTTGCCAGCACTGCGGCAAGGAGTTCTTGAGGCTTAACTCTATGCACAGACACGTCCAGGTATGCCATGCTGGTCATAGGATTCAATGTCCTATTTGCAAAAAGAAGTTGAAGGGACACTTAACAGAGCACTTGCGGACACATGACAAGAAGCGACCTCATCAATGCCCTGATTGTAAGCAGTGTTTCACACAGTCTACTCAGCTGACAGTCCACCGTCGGTCCCATACGGGTGCCAGACCATATCCTTGCAAGATTTGTGATAGAAGTTTCTCACATTCAACTGCTCTAATGCTTCACATCAGGCGTCACACAGGTGAAAAACCATTCCCCTGTGCTATGTGCCCGTTGATGTTCTCACAGCTACCGCACATGAAAGCTCACATGAGAAAAATCCATGGCAAAGAAAATGCATACAAATGTACTAAATGTGGTCAATTTTTCAAACTGAAGGTGGGCTTGGAAAGCCATAAAAAAACCTGTACTGTTGGAGACAAAACTTTGAGCTTCGAGGAGAAAATTCAAGCTTCAGTTCAGTATGAAGAAATTGAGGTGGAATCCATTATGACTCTATCTCGAATGAGGTACTTGCTTGCTGTGCTCCTCACCATCATTGCAAGCAAAGAAAAACTCAAATATTTGGGTTTCAACAAACGCCTTATAGACGATTTGTTGGTGGAATCTCTCGAGGCCATGAAGCTTACACCATGCGATGATGACTCTCTGTCGCCACACAAGAGGCTTAAGGCGAACATTGAGATTCTTATTAGTGGTACAGTCCCAAAAGATCAGATGGAAATTCTGAAGAAACAGAACAAAACTACGGAAGAAGTATTAGAGCTCTTGACTGAAGACAACAAGAAAGAAGACTAA
- Protein Sequence
- MASVKSKLSARSASKRDSKSDESVAVMKNASILDTSDDIEQFLARNGNKVPKPNILKNDKDKIKIFPLHQASLMSRSGLIKRKDPEKLKLFNNILKSELLISDTVKTRPKKKQNVNNNNDVETNDKNKSDNVTSNTIKSAGVSKRDKPKPKKQDAKKSPKKLTVQDTGFISNPFKNLNLLRSDSPNPGSPVPPEFECDYCGKTYKVKRNLEKHIYGHLNVKPYRCPQCPKKFHYRVNMQVHVMKIHHEFDDLLDHYECHICQTAFLMKETLNAHLSTHHSRKASFFKCFYCEKKFSDNIHLVDHEEQHLVKGKYKCTMCDLDYTSRNQLESHFKGHLKIKEYICQHCGKEFLRLNSMHRHVQVCHAGHRIQCPICKKKLKGHLTEHLRTHDKKRPHQCPDCKQCFTQSTQLTVHRRSHTGARPYPCKICDRSFSHSTALMLHIRRHTGEKPFPCAMCPLMFSQLPHMKAHMRKIHGKENAYKCTKCGQFFKLKVGLESHKKTCTVGDKTLSFEEKIQASVQYEEIEVESIMTLSRMRYLLAVLLTIIASKEKLKYLGFNKRLIDDLLVESLEAMKLTPCDDDSLSPHKRLKANIEILISGTVPKDQMEILKKQNKTTEEVLELLTEDNKKED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01504137;
- 90% Identity
- -
- 80% Identity
- -