Ufer014667.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Udea ferrugalis
Gene Symbol
-
Assembly
GCA_950022985.1
Location
OX465527.1:13616038-13633896[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.00032 0.031 15.6 3.4 1 23 229 251 229 251 0.98
2 11 0.0014 0.13 13.6 9.2 1 23 257 279 257 279 0.97
3 11 1.8e-06 0.00017 22.7 5.0 1 23 285 307 285 307 0.99
4 11 0.00089 0.084 14.2 1.0 1 23 313 335 313 335 0.97
5 11 8e-06 0.00076 20.7 1.0 1 23 341 363 341 363 0.97
6 11 6.3e-06 0.0006 21.0 0.0 1 23 369 391 369 391 0.98
7 11 7e-05 0.0066 17.7 0.4 1 23 396 418 396 418 0.96
8 11 0.6 57 5.3 3.3 3 19 426 442 425 448 0.92
9 11 2.1e-05 0.002 19.4 0.8 1 23 525 547 525 547 0.98
10 11 0.0016 0.15 13.5 3.3 1 23 619 641 619 641 0.96
11 11 3.7e-05 0.0035 18.6 4.3 1 23 651 673 651 673 0.97

Sequence Information

Coding Sequence
ATGTGTACGCCGACACCAAGCAATGTCTCTTGCTTTGCTTATTCGTGGGGTTTCACTAGTTCTGCTGACCTAGCCAAGGGCGAGGTGGATACTCCGGCAAGTTTGAGCTACACTCTGGGAAACACGGTGTCACCAGAGACAACTTTGACTGTGATGTCACATAAGACACCACAGATACAAGAAAAAGTCAGTGCAGTTTCCGTGGCAGGCTCCAACATTGGGCAAGCCACAAGGGTTGTGACGACAGGCACACCAAGAAGGGCGATGTTCGTGCTAAATGACACACCGACACATACCATCAACAGAGTGTCACAGCAGAACCAGACTGCTACTATACACACTGCCAACCTGACCGCCAAACCGTTTATGACCCCGATCGGCCCTATCCAGCTCACTGCTGAAGAATGCAATGAGATTCTGATGAAGCGAGCCCTCCAAGCTCAAGGGATCGCCACACCAGTTATTGACGCATCGCAACTGAACCATACTCTGCTCAATGGGGGCATCAAAACGATAAGTGAGCCACAGCAGCAGAACGACAACCTCCAGACAACTCAAGTACACCAACACCATATACTGCACACTAAACAGGAGCCTGGAACCACAAATAATTCTTCAaaaACGGACCTGCTGAACTCCTCGGCTGTGCTGACGACGCCGCCAGCCACCGTCAAGGAGCGCCCCTATTCGTGTGAAGAGTGCGGCAAGTCGTTCTTGCTGAAGCACCATCTCACGACCCACGCCAGGGTTCATACAGGTGAGCGGCCGCACGTTTGCGAccaatgcggcaagtcgttcgCGCACAAGCACTGCCTGCGCACCCACTCGCGACTCCACAGCGCAGACCGGCCGTACGTCTGCGAGGAATGCGGAAAGGCCTTCACACTCAAGCACCATCTCCACACGCATATGCGGGTACACAGCCGGGACCGTCCCTTCGTATGCGGCGAGTGCGGCCGAGGCTTCCCCCTAAAGCGCCACCTCGTGACGCACAGCAAGTACCACGCCGGGGAGAGGCCCTATGTCTGCACGGACTGCGGGGAAAGCTTCGCGCAGAAGGAGCACCTAGTGATGCACAGCCGCTTCCACGGCTCCCTATCCCCGTTCGTGTGCCCGGACTGTGGCGCCGCCTTCGCGCGCAAGTTCCAGCTCGTGAACCACGGCCGAGTCCACGGCAAGGTGCCCCACGCCTGCCCTGTTTGTGGCAAGGAGTTCCTGCAGAAGAGGACGCTGGTCGCGCACATGAAaaTACACACCGGCGAAGGCGTAGTTGCCTGCCTAGAATGCGGTGAAGCTTTCAAATGCAAATCAGAGTTGCAGCAACACTGCAAAATAACTAGGCACTGCCTCTCCAACTCTCCGCAACACAcacaacagcagcagcagcaacaacaacaacagcagcagcaacaacaacaacagcagcaacagcaacagcagcagcaacaacaacagcaacaacaacagcagcaaCAGCAAGTTACTGTGATCAAGCAAGATGATTTTAAACCCCAAATAGTGCAGGTTATTGGCGCTGATGGTCAGATAGTTACAGAGAAAACTACGCCGGGCTACTCTTGTCCGGAGTGTGGGTCCTGTTTCAACACAAAGGAGGCGTTGTCGCTGCACGTGCGTCTGCACGCGGGCGATCGCACGTGTGTGACGGACCTGTGCGCGCTGACGGCGGCGCTGCAGCCCGGCCTCGTGCACGCGCACGCCGCGCACAACGCGCACAACCAGTACACGCGCACGCACGACCAACCGATCCAAATAATATCAGCAAACCCCAGTAATGTTGTACACACGCAAGTTATAGCAACGAACCACCATATAAACTCGCCCCGGCCGAAGATACACTTCTGCGTCGACTGCGGCAAAGGTTTCGCGGCCAAACACGGACTCCTGGCGCATCACAGAAGACATCCAGACGGCAGTTGTACTCTAAGAACGCACGTTTGCGACCAGTGCGGCAAAGCGTTCTTCCAGAAGAACCACCTGATGCTGCATCAGAGACAACACATGGACCTGCCTCCTAGAACTACCCAAGTGCAACAACAAGCGACGCAACAAGCCCAGCAACAAGCGCAACAACAGGCGGCGCAACAGGCCGCGCAGCAGGCTGCGCAGCAAGTACAACAACAGGTTCAGCAACAAGTACAgcaacaacagcagcagcagcagcaacaacagcagcaacagcaacaacagcagcagcaacaacagcaacaacaacagcagcaaCAGCAACACCACGCAAGCCTTGATTTAGAACAAGATCACACTCCTACGCACATACAAGTGGTGACAAACCGTTCAGGGCAGGTGATCGGCAACCAGATAGTGGTGGGGTCTGTGGGCGCGCGCCGCCTCGTCACCACGACGGGCTCGCAGCTGCACATCATCCGCGACGCCAAGGCGCAGCATCTGCACGCCAAGCATCGCCTTAACGCCGGTGACGTAAAAGAAGTGGGCGGGCTGGTGTTATCAGCGGGGCGTGGCACCGGCCTCATCAAGTACGAGATCTCGATCCCTCCCCCCACCTCGGTCGTGCAAGTCCAGCAGCTGGACTGA
Protein Sequence
MCTPTPSNVSCFAYSWGFTSSADLAKGEVDTPASLSYTLGNTVSPETTLTVMSHKTPQIQEKVSAVSVAGSNIGQATRVVTTGTPRRAMFVLNDTPTHTINRVSQQNQTATIHTANLTAKPFMTPIGPIQLTAEECNEILMKRALQAQGIATPVIDASQLNHTLLNGGIKTISEPQQQNDNLQTTQVHQHHILHTKQEPGTTNNSSKTDLLNSSAVLTTPPATVKERPYSCEECGKSFLLKHHLTTHARVHTGERPHVCDQCGKSFAHKHCLRTHSRLHSADRPYVCEECGKAFTLKHHLHTHMRVHSRDRPFVCGECGRGFPLKRHLVTHSKYHAGERPYVCTDCGESFAQKEHLVMHSRFHGSLSPFVCPDCGAAFARKFQLVNHGRVHGKVPHACPVCGKEFLQKRTLVAHMKIHTGEGVVACLECGEAFKCKSELQQHCKITRHCLSNSPQHTQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQVTVIKQDDFKPQIVQVIGADGQIVTEKTTPGYSCPECGSCFNTKEALSLHVRLHAGDRTCVTDLCALTAALQPGLVHAHAAHNAHNQYTRTHDQPIQIISANPSNVVHTQVIATNHHINSPRPKIHFCVDCGKGFAAKHGLLAHHRRHPDGSCTLRTHVCDQCGKAFFQKNHLMLHQRQHMDLPPRTTQVQQQATQQAQQQAQQQAAQQAAQQAAQQVQQQVQQQVQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHHASLDLEQDHTPTHIQVVTNRSGQVIGNQIVVGSVGARRLVTTTGSQLHIIRDAKAQHLHAKHRLNAGDVKEVGGLVLSAGRGTGLIKYEISIPPPTSVVQVQQLD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01282625;
90% Identity
-
80% Identity
-