Ufer022333.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Udea ferrugalis
Gene Symbol
-
Assembly
GCA_950022985.1
Location
OX465535.1:9966165-9986752[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 1.8e-05 0.0017 19.6 8.4 2 23 14 35 13 35 0.97
2 17 4.9e-06 0.00047 21.3 0.7 1 23 41 63 41 63 0.98
3 17 2.8e-06 0.00026 22.1 1.3 1 23 69 91 69 91 0.99
4 17 0.0015 0.15 13.5 0.8 1 23 97 119 97 119 0.98
5 17 0.0015 0.15 13.5 0.8 1 23 141 163 141 163 0.98
6 17 0.0015 0.15 13.5 0.8 1 23 185 207 185 207 0.98
7 17 0.0015 0.15 13.5 0.8 1 23 229 251 229 251 0.98
8 17 0.0015 0.15 13.5 0.8 1 23 273 295 273 295 0.98
9 17 0.0015 0.15 13.5 0.8 1 23 317 339 317 339 0.98
10 17 0.0015 0.15 13.5 0.8 1 23 361 383 361 383 0.98
11 17 0.0015 0.15 13.5 0.8 1 23 405 427 405 427 0.98
12 17 0.0015 0.15 13.5 0.8 1 23 449 471 449 471 0.98
13 17 0.0015 0.15 13.5 0.8 1 23 493 515 493 515 0.98
14 17 2.5e-05 0.0024 19.1 2.2 1 23 520 542 520 542 0.97
15 17 0.002 0.19 13.1 0.6 1 23 548 570 548 570 0.96
16 17 2e-06 0.00019 22.6 0.6 1 23 576 598 576 598 0.99
17 17 0.00013 0.013 16.8 3.2 1 23 656 678 656 678 0.99

Sequence Information

Coding Sequence
ATGGTCCACTTCCGCCTGCACACCGGCGAGAAACCGCTCAAATGCTCCGAGTGCAACAAGACCTTCAGGCGCCACTCGACGCTGTGCCAACACATGAAGAAACACCGCGGCATCAGGAACCACGTGTGCAACATCTGCAACAAGGCTTTCTACGAGGTGTCCAAGCTCAACGCTCATATGCGCGTGCATACAGGCGAGCGTCCATTCGAGTGCCAGTACTGCGAGCGCAAGTTCGCGCAGCAGTCGGCGCTGATCTACCACCGGCGCACGCACACGGGCGAGAAGCCCTACAGCTGCAAGCTCTGCGCCGCGCGCTTCACCACCTCCTCCGCCAGGAACAACCATCTGCTGACACACCAGGGGAAGAAGTTAGTcacattatctatctatctatctatctatcacacGGGCGAGAAGCCCTACAGCTGCAAGCTCTGCGCCGCGCGCTTCACCACCTCCTCCGCCAGGAACAACCATCTGCTGACACACCAGGGGAAGAAGTTAGTcacattatctatctatctatctatctatcacacGGGCGAGAAGCCCTACAGCTGCAAGCTCTGCGCCGCGCGCTTCACCACCTCCTCCGCCAGGAACAACCATCTGCTGACACACCAGGGGAAGAAGTTAGTcacattatctatctatctatctatctatcacacGGGCGAGAAGCCCTACAGCTGCAAGCTCTGCGCCGCGCGCTTCACCACCTCCTCCGCCAGGAACAACCATCTGCTGACACACCAGGGGAAGAAGTTAGTcacattatctatctatctatctatctatcacacGGGCGAGAAGCCCTACAGCTGCAAGCTCTGCGCCGCGCGCTTCACCACCTCCTCCGCCAGGAACAACCATCTGCTGACACACCAGGGGAAGAAGTTAGTcacattatctatctatctatctatctatcacacGGGCGAGAAGCCCTACAGCTGCAAGCTCTGCGCCGCGCGCTTCACCACCTCCTCCGCCAGGAACAACCATCTGCTGACACACCAGGGGAAGAAGTTAGTcacattatctatctatctatctatctatcacacGGGCGAGAAGCCCTACAGCTGCAAGCTCTGCGCCGCGCGCTTCACCACCTCCTCCGCCAGGAACAACCATCTGCTGACACACCAGGGGAAGAAGTTAGTcacattatctatctatctatctatctatcacacGGGCGAGAAGCCCTACAGCTGCAAGCTCTGCGCCGCGCGCTTCACCACCTCCTCCGCCAGGAACAACCATCTGCTGACACACCAGGGGAAGAAGTTAGTtacattatctatctatctatctatctatcacacGGGCGAGAAGCCCTACAGCTGCAAGCTCTGCGCCGCGCGCTTCACCACCTCCTCCGCCAGGAACAACCATCTGCTGACACACCAGGGCAAGAAGTTAGTtacattatctatctatctatctatctatcacacGGGCGAGAAGCCCTACAGCTGCAAGCTCTGCGCCGCGCGCTTCACCACCTCCTCCGCCAGGAACAACCATCTGCTGACACACCAGGGGAAGAAATTCGTCTGCCACGTGTGCTTCAAGAGCTTCACAACGCGCACAGAGCTCCGCGTGCACGCCGCGAAGCACGCCGGCGAGAAGCTGTTCGCGTGCGAGGCGTGTCCGCAGCGCTTCGGCTCCGCGGCGCATCTCGCCGCGCATCGCCGGCATCACCTCGCCGACCGCAAGTACCAGTGCAACGTCTGCGGGAGAGGTTACATAGAAGCAAGTTCGTATAAAAAGCACATGAAAACTCACGAAGTGAAGGCGGACTCCGAGTCGTCCAACTCCGAGAACTGCGGAGAGACACAAGAGGAAGCGGCGAAGAATGAGGTTGTGGTGAACGACATACAGGCGCAAGTCACCATCACGACTGAGGAAACGCAGGAGGTGAGGACGCCGCGGCCGCGCGAGGAGACTCAGAAACGCTACAAATGCGGCGTCTGTGTCAAGACTTACATGTACCTGCACAGCCTCAAGAAGCACATGATGACTCATGTACAGCAACaacagcaacaacaacaacaaacgcAGCAAGCCCAGCAGctccaacaacaacaacaacagcagcagcagcagcaacaacaacaacagcagcatCAAGTGCAACAGCAACAATTGCAGCAGCAAGCCGTGCTGCAGGTCGGCGGCGTGCAACAACTCACTGTGCCTATTCATGCGCACCACGTGCAACAAGGACTTGTGCAGAACAGTCCACACGCGTATCCGGTGATATCTTCAGTGCAGTCGCTTCAGTTGCAACAAACGCAGCAGCAGGTTAATACGGCGGTGGGAGTGCAGCAAGTGCAGCAGCAGCAACTACACGTGGCCACGTCTTCTTGCCAGACCATGTTGCCAAACATATTGCAGTTGCAGCCAGGCGCAGCAGTGGCGGTGTCGGGTCTGGGCGGCGCGGAGCTGGGCGGCGTGGCGCACCGCATCCTGCTGCAGCCGCCCGCGCACGCGCATCCGCACGCGCACGTCACGCATCCCGCCGTCTACACTATACATCACTGA
Protein Sequence
MVHFRLHTGEKPLKCSECNKTFRRHSTLCQHMKKHRGIRNHVCNICNKAFYEVSKLNAHMRVHTGERPFECQYCERKFAQQSALIYHRRTHTGEKPYSCKLCAARFTTSSARNNHLLTHQGKKLVTLSIYLSIYHTGEKPYSCKLCAARFTTSSARNNHLLTHQGKKLVTLSIYLSIYHTGEKPYSCKLCAARFTTSSARNNHLLTHQGKKLVTLSIYLSIYHTGEKPYSCKLCAARFTTSSARNNHLLTHQGKKLVTLSIYLSIYHTGEKPYSCKLCAARFTTSSARNNHLLTHQGKKLVTLSIYLSIYHTGEKPYSCKLCAARFTTSSARNNHLLTHQGKKLVTLSIYLSIYHTGEKPYSCKLCAARFTTSSARNNHLLTHQGKKLVTLSIYLSIYHTGEKPYSCKLCAARFTTSSARNNHLLTHQGKKLVTLSIYLSIYHTGEKPYSCKLCAARFTTSSARNNHLLTHQGKKLVTLSIYLSIYHTGEKPYSCKLCAARFTTSSARNNHLLTHQGKKFVCHVCFKSFTTRTELRVHAAKHAGEKLFACEACPQRFGSAAHLAAHRRHHLADRKYQCNVCGRGYIEASSYKKHMKTHEVKADSESSNSENCGETQEEAAKNEVVVNDIQAQVTITTEETQEVRTPRPREETQKRYKCGVCVKTYMYLHSLKKHMMTHVQQQQQQQQQTQQAQQLQQQQQQQQQQQQQQQQHQVQQQQLQQQAVLQVGGVQQLTVPIHAHHVQQGLVQNSPHAYPVISSVQSLQLQQTQQQVNTAVGVQQVQQQQLHVATSSCQTMLPNILQLQPGAAVAVSGLGGAELGGVAHRILLQPPAHAHPHAHVTHPAVYTIHH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-