Ufer029201.2
Basic Information
- Insect
- Udea ferrugalis
- Gene Symbol
- -
- Assembly
- GCA_950022985.1
- Location
- OX465545.1:2546460-2553849[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.0069 0.65 11.4 1.0 1 19 48 66 48 67 0.96 2 26 0.22 21 6.7 0.8 1 23 96 119 96 119 0.96 3 26 0.076 7.2 8.1 0.2 1 23 140 162 140 162 0.94 4 26 0.017 1.6 10.2 0.2 1 23 166 188 166 188 0.95 5 26 0.0029 0.28 12.6 0.9 2 23 236 258 235 258 0.96 6 26 0.013 1.2 10.6 0.2 1 23 264 286 264 286 0.97 7 26 6.9 6.6e+02 2.0 0.4 1 9 290 298 290 302 0.89 8 26 1.6 1.5e+02 4.0 0.1 1 23 431 454 431 454 0.89 9 26 2.1 2e+02 3.6 0.1 3 23 480 501 478 501 0.92 10 26 0.16 15 7.1 0.1 1 23 525 547 525 547 0.96 11 26 0.00092 0.087 14.2 0.2 1 23 551 573 551 573 0.98 12 26 0.00044 0.042 15.2 0.5 1 23 578 601 578 601 0.96 13 26 0.0052 0.49 11.8 0.3 2 23 608 630 608 630 0.93 14 26 0.041 3.9 9.0 6.3 1 23 637 660 637 660 0.96 15 26 0.00014 0.013 16.8 4.9 2 23 667 688 666 688 0.96 16 26 4.7e-05 0.0044 18.2 0.6 1 23 694 716 694 716 0.99 17 26 2.1 2e+02 3.6 0.4 1 20 861 880 861 884 0.86 18 26 0.00029 0.028 15.7 0.6 2 23 910 931 909 931 0.96 19 26 0.061 5.8 8.4 0.1 1 23 953 975 953 975 0.97 20 26 1.7e-05 0.0017 19.6 0.3 1 23 979 1001 979 1001 0.99 21 26 7.6e-05 0.0073 17.6 0.4 1 23 1006 1029 1006 1029 0.96 22 26 9.7e-05 0.0092 17.2 0.9 2 23 1036 1058 1036 1058 0.97 23 26 9.6e-05 0.0091 17.3 1.1 1 23 1065 1088 1065 1088 0.98 24 26 0.055 5.2 8.6 7.4 1 23 1094 1116 1094 1116 0.96 25 26 2.5e-06 0.00024 22.2 1.4 1 23 1122 1144 1122 1144 0.98 26 26 0.00073 0.069 14.5 0.1 2 23 1149 1171 1149 1171 0.96
Sequence Information
- Coding Sequence
- ATGCTTCTAAAAGAAGTAAAGAAAAAAGGTGAAACAAAAATTGCAGCaggtcaaaaacttaataagAAACTTGCCAGACTCTCAGCCGTCTCCATAATTAGCAGTACAATCTGCTGCCCGTTTAAACAGTTGAACCTAAATTTCATGTGCTTCTACTGCGATAACAAGTACTCCAACATCTCGAATCTAGAAAAGCACACCTGGGAAGAACACAAGGGCGATGAGAAGCAAATATTGCGAGCCATAATTGGCAGGTACACcaaaattaaagtaaatttCAACACGTTTTCCTGTAAGCAATGCAGCTACGTTGCTGACGAATACAATAAATTGAAGAAACATCTTTTGGTGCAACACGAGAAGAAAGTAGATCTTCAAAATGATGGCATATTGCCTTACAAGATGCGTGGCGATGACTTCGCGTGCGGGCTTTGCGCCCAAAGTTTCGTCAACTACAGAGTCCTCAATAGACATGTGGATAATCACTTTGTCAGCTATTATTGTGACCTCTGTGGCGTCGGCTTCGCCACTTCAGAACGTTTATATTCACATTCCACTGTTCACACAAAATCAAAAAAGCTCCATGAAGACAAAATTGAAATAGAAGAAAAATTTGAAATAGAAATCAAAATGGAGACAGATTCGACTCATATGGAGCCAAATACTGCACTAGAGCAAACGAACAGTGAACCTGATTCAGATCTTCGATGTAGATGGTgctctaaaatgtttctggtaAAGGGCAATTTGAAACGGCATGAGAGGACAGTGCATTCCGTGGAGAAGAAATACGAATGCGATGTCTGCCACAAGGTGTTGCCCAATTGGTTTATATTGAAAGCTCACCTGGTTAGGCACAGCAAGAAGCATGAATGCCACGTTTGCAAGAAGAGTCAAAGTACAGCTCAGTTTATTTCTTTTCTAGGAGCCGACCAGGCACAATTTCCGGATATAGCGAAGCAGAAACAGATCGTGCCTCTCTTTCAAGTAGCGTACGACCGCAGCCTGTGTAGGCCTCTTGGGACTATAACAGACTTCAGAAAGATCGCTCGATATAGACAAACGTCGAATATGAGAGTGTCTTCTAACACCAGGGATTTCTCCCCATCACGCAGTCCGTCTCCTGTATCCGCTGGTGCCAGAACCCCTACTCCCTTTGAGGAGGTTGTATCTACCGAAACAATAACCAGTGTGCCGAAACCTAAACCGAAGAACCCAGACGTCCGGCAAAATGCCCTGACTATTTTCGAGTTTTCTACTGTTTACCCTTTTATTTATGGgaacaataaatttaaatgctTCATCTGCTCTCAACCGTTTTTAGATACTGCCATATTAAGAATACACATGAATGAAGCTCACACTTTTGCTCCGCTCAAAAGATTAGTAAATAACAGAAGAGAAAATATTCTCAAAGTAGACGTAAGTGAGGTCATATGCAAAATTTGTTTAAGCAAACTCCCGGGACTATCTGAACTAAAAACTCATCTTAAATTAGAGCACCAGAAACCAATAGATCCTGAATTGAAAGATAATATTATACCATTTAAGCTGGAAGCAACAGAAGGCGGCTACAAGTGCGTTATGTGCGATCAAAACTTCATCAAAGTCAGGATTTTAGTTATACACATGAGCGTGCACTTCAATAATTATAGTTGCGAAGTGTGTGGATCTGGGTTCATGACTTTAAGATTGCTGAAAAAACATTTGGAAGTGCACGAAACTGGCAATTTCCCTTGCGATCGCTGCAGCAAAGTCTTCAGCACACCTTACAAAAGAACTCTACATATCAGAGGGGTACACATGAAGCAGTACCCTCGCCGTTGTCCAATATGTCCAGAAAGGTTTAATTCAAATTATAAAAGGACTATTCATTTGCAAGACGTACACAATCAGTCGACGCGAGTTCACAAATGCGAAACATGTGGTAGAGCGTTTAATTTGAAATACCATCTGATATGCCACACGAGGTCGGTGCATCTACAAGAGCGAAACCAGCAGTGTGACGTTTGCCACCAGAGGTTTTGCAACAAAGAAACATTGAAGAGGCATATGGTGATACACACGGGCGAGAAGAATTATAAGTGCGAGGTGTGCGGGATGGCATTCTTGCGGAGAAAGAACTTAAAAGACCATCTTAGGTTGCATGAGATGGGAGTCATCCAAGCGAGTGATTCGTCGATCACAATCAAAGATGAAGACGGAAATGACATCAAACTGACGCTTCTCAAGTTTCCGATATCACTGGACGGACTTGAATGGGAGTATGAAGATACCGAAGAAGACAATGgccgaaaaaataataaaactaaaagaagACTTGGCAAAAAAATGCGTAGGCCTAAACATAATATTACAGAAGTTGCTGTTCTTAAAGAACCCATATCTCTCGATGAATGGAATAAGGCAGAGGAAGTTCGAAGTGAAGTAACTTATAATGTCAAAACGATTCAAGGATCGTTCTTATGGGGCATCGgaaagaaaaaagttaaagatCTAGAATTTCAACCGTGGAAACTCCAAGCCTTGACTATATTCGAGAATTCATATGTCTACCCATTTGTTCATGCTGGTAATAAGTATAAATGCTACGTCTGCGCTAAACCATTTCTCGATGGCAATTTGCTGAAGAAACATTCAACGGAAGACCATACGCTTAATGATTTACAGAAGGAATTGACCAACAGAATCAGGGATAAGAATCTCAAGATCGATATTTCCCATTTACAGTGTAAAATTTGTTTAGAATCCTTTTCTGACTATGGTAAACTTAAAAGTCATTTGAAAGAGCACGGAAAAAACATAGATTTAAGTCTCAAAGATAATTTAATACCTTTTAAATTGAATGGGAATCGATTTGACTGCCAAGTCTGTGGAGTTCCTTTCCTAAAATTGAGACTTCTTATAATTCACATGAGTAAACATTTCAATAACTACAGTTGCGAAGTTTGTGGCTCGGTTTTCATATCATTGAATCTTCTTAAGCGCCATCAACAGACACATGAGTCAGGAAATTTTCCCTGTGATAAGTGTGacaaaatatttagtaattCAGCTAAAAGAACTTTGCATATGCGCGGGGTTCATCTAAAACAATTGCCGCGTCGCTGTCCCATATGTCCAGAGAGATTTAACTCAAATTATCAACGAACCAAACATTTGCGTGTATTCCACAACCAAACCTCTGCATTGTACCGATGCGAGACTTGTGGGCGAGAGTACGACTTGAAATACCACCTACTTATCCATATAAGGTCAGTGCATCTCCAAGAACGGAATCACGAATGTTCTATTTGCCACTCTCGGTTCTTCTCCAAGTACTGTTTGTCCAGACACATGGTTATTCACACAGGGGAAAAGAACTTCAAGTGTAGCGTGTGCGGGAAAGCTTATGCTAGGAAGAAAAATCTTCGGGAGCATTTCAGGTTGCATGAGATGAGTCCCAGTTGTTCTGTTTGTGGACACAGTAGTGTGGATCAAGCTTCACTGCTGGCACATATGAACGTAGCTCATGGAGTCTTGTAG
- Protein Sequence
- MLLKEVKKKGETKIAAGQKLNKKLARLSAVSIISSTICCPFKQLNLNFMCFYCDNKYSNISNLEKHTWEEHKGDEKQILRAIIGRYTKIKVNFNTFSCKQCSYVADEYNKLKKHLLVQHEKKVDLQNDGILPYKMRGDDFACGLCAQSFVNYRVLNRHVDNHFVSYYCDLCGVGFATSERLYSHSTVHTKSKKLHEDKIEIEEKFEIEIKMETDSTHMEPNTALEQTNSEPDSDLRCRWCSKMFLVKGNLKRHERTVHSVEKKYECDVCHKVLPNWFILKAHLVRHSKKHECHVCKKSQSTAQFISFLGADQAQFPDIAKQKQIVPLFQVAYDRSLCRPLGTITDFRKIARYRQTSNMRVSSNTRDFSPSRSPSPVSAGARTPTPFEEVVSTETITSVPKPKPKNPDVRQNALTIFEFSTVYPFIYGNNKFKCFICSQPFLDTAILRIHMNEAHTFAPLKRLVNNRRENILKVDVSEVICKICLSKLPGLSELKTHLKLEHQKPIDPELKDNIIPFKLEATEGGYKCVMCDQNFIKVRILVIHMSVHFNNYSCEVCGSGFMTLRLLKKHLEVHETGNFPCDRCSKVFSTPYKRTLHIRGVHMKQYPRRCPICPERFNSNYKRTIHLQDVHNQSTRVHKCETCGRAFNLKYHLICHTRSVHLQERNQQCDVCHQRFCNKETLKRHMVIHTGEKNYKCEVCGMAFLRRKNLKDHLRLHEMGVIQASDSSITIKDEDGNDIKLTLLKFPISLDGLEWEYEDTEEDNGRKNNKTKRRLGKKMRRPKHNITEVAVLKEPISLDEWNKAEEVRSEVTYNVKTIQGSFLWGIGKKKVKDLEFQPWKLQALTIFENSYVYPFVHAGNKYKCYVCAKPFLDGNLLKKHSTEDHTLNDLQKELTNRIRDKNLKIDISHLQCKICLESFSDYGKLKSHLKEHGKNIDLSLKDNLIPFKLNGNRFDCQVCGVPFLKLRLLIIHMSKHFNNYSCEVCGSVFISLNLLKRHQQTHESGNFPCDKCDKIFSNSAKRTLHMRGVHLKQLPRRCPICPERFNSNYQRTKHLRVFHNQTSALYRCETCGREYDLKYHLLIHIRSVHLQERNHECSICHSRFFSKYCLSRHMVIHTGEKNFKCSVCGKAYARKKNLREHFRLHEMSPSCSVCGHSSVDQASLLAHMNVAHGVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -