Ufer000952.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Udea ferrugalis
Gene Symbol
-
Assembly
GCA_950022985.1
Location
OX465515.1:15208797-15219367[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.0013 0.12 13.7 0.9 1 21 151 171 151 172 0.95
2 17 0.0037 0.35 12.3 0.1 3 20 187 204 186 204 0.97
3 17 0.023 2.2 9.8 2.2 1 23 247 269 247 269 0.96
4 17 0.42 40 5.8 0.0 2 19 341 358 340 363 0.88
5 17 0.39 37 5.9 0.1 2 21 369 388 368 389 0.91
6 17 0.00034 0.033 15.5 1.8 1 23 397 420 397 420 0.97
7 17 1.4e-06 0.00013 23.0 2.4 1 23 441 463 441 463 0.99
8 17 8.3e-07 7.9e-05 23.8 2.2 1 23 468 490 468 490 0.98
9 17 3.9e-07 3.7e-05 24.8 2.3 3 23 503 523 501 523 0.96
10 17 3.9e-05 0.0037 18.5 3.2 1 23 529 551 529 551 0.99
11 17 2.1e-06 0.0002 22.5 2.5 2 23 558 579 557 579 0.96
12 17 6.4e-07 6.1e-05 24.1 1.5 1 23 585 607 585 607 0.99
13 17 0.00025 0.023 16.0 0.2 1 23 613 635 613 635 0.98
14 17 6.4e-07 6.1e-05 24.1 1.5 1 23 692 714 692 714 0.99
15 17 0.00025 0.023 16.0 0.2 1 23 720 742 720 742 0.98
16 17 6.4e-07 6.1e-05 24.1 1.5 1 23 799 821 799 821 0.99
17 17 0.00025 0.023 16.0 0.2 1 23 827 849 827 849 0.98

Sequence Information

Coding Sequence
atGGCTTCTTCTGCACaagtaacaaaaattaaaattgaggacGTGTGCCGAACTTGTTTAGCCAAAGAAAATGAACTGCATTCTGTTTTCGATGTTTCCATCGGTGCAACCACACTCGACTGTGTAATCGCTGAAATAACTGGCATAAAGATTGAACACAGTGATGGATTGCCTTCAACAGTGTGCCACATGTGTAAAGAAAAGGCAAGCAAGGCTTATGAGTTCAGAAAACAATCGCAAGAAGCAAACACTACTCTCTACAATGTTttcaaaaaagaagaaaatgaaTTGTCTTTACAAGACAGCACAACATGTCAGCCATCTGCCGCCAGTATCAAAACTGAGAATCTGCCTACAGATGACAGTGATTATGTAGACTGGATCGGGCTTGATGATTTCAACAGTATTGACGCTGTGAAGGATGAAAGTGATAACGAGAAAATCTCGCCTTATCAATGTAAAAATTGCAACTCAGTATTCAAAAATGACGATAAACTGCAACAACACATTACAAAAAAGTGTTTGAAAGTGGAATTTGACGATGCGGGAAGTAACTTCTGTCCATTGTGTGGTACTAATTACTATGATGCTGTCAATTTAACAACACATATGTGGGATAATCATGCCGATTTGATGGGCCCCAAGAAAAGAGGAagacctaaaaaaatattaacaactACTATATTAACAAAGTTATCAGAAAATGGTTTCCGTTTGAAAGCCGTTACTGTTGAACAATATGACTGCATGTTGTGTAAAGAGCATTGCAAGACCAAAGAAGAGTTAGCGATACACTTGATGGACCACaaggGTACAAAAGTATTATGTTGTCTcctatgtaaaaaaatgtatttaaagacTAAACATTTCAATCGACATGCTTGTGCAGATGACACAGCAAACATGAAGAAGgatAGTGAAGATACTAATGAAAAGAACAAGCAAAATTTCGTTTCTGAAATAGCTCTGGAAGATCTCCTTGAACCGAGTGGCATCACGGAGAACGTTACGTTACTTCAAGTTTGTGAGATATGCAGCGGCGTGTTTACATCTGAAGGGGAACTAATGGGACACAATGACGCAGAGCATCCTGAACGATCGCTTCGGTGCAACCTCTGTTTGAAGGTATTTGCGTCAGTAAAATCTGCAGCCAAACATAGAAATCTATGCAAGCAGGTGGAAAGGAAGCACAAATGCAGCACTTGCGGGCTTAAGTTTGCTTATGAAATATCTCTAAACAAACATATATTGAGGTATCATGAGGGACAGAGCGTCTCGGTTAAATTTATGGACACTAAATCTAAAGAGGAAGAAAAACAGTATCAATGTGACACATGCAGTAAACAGTTTTCAAGAAAAGAATTATTGGCTAAACATACAAGGACCCATTCCGACAAATTGTATGAGTGTGACATTTGCAAAAAGAAATTTAATAGGAGTGATAATCTAAGATCACATAAAAAAATCCACGACCCACGCGAGAAGACCAAAGCCAACACTTGTTTGTGTCTGTACTGTGGTCGAAGTTTCAACAATTCCTCTAACTTGATCGTGCACATGCGCCGGCACACCGGCGAAAAACCATACAAATGCGATTTCTGTGGTAAAGGTTTCCCTCGGTCCTCGGATTTACAATGCCATAGAAGGTCACATACGGGCGAAAAACCTTGCGTTTGCCGTGTTTGTGGAAAAGGATTTTCGCGCAGCAACAAGTTGTCGCGGCACATGCGCGTGCACACCGGCTTGAAGCCGTACAAGTGCACGTACTGCGAGAAGGCGTTCTCGCAGAGCAACGACCTGACGCTGCACGTGCGCCGGCACACCGGGGACAAGCCCTACATCTGCGAGGTCTGCGGCGACCGCTTCATCCAGAGCAACGACCTGACGCTGCACGTGCGCCGGCACACCGGGGACAAGCCCTACATCTGCGAGGTCTGCGGCGACCGCTTCATCCAGGTTCGAACCCCAATCCCCACGCTCTGGGCCCTGTACACACAGGCCTCAAGCCGTACAAGTGCACGTTCGAACCCCAATCCCCACGCTCTGGGCCCTGTACACACAGGCCTCAAGCCGTACAAGTGCACGTACTGCGAGAAGGCGTTCTCGCAGAGCAACGACCTGACGCTGCACGTGCGCCGGCACACCGGGGACAAGCCCTACATCTGCGAGGTCTGCGGCGACCGCTTCATCCAGAGCAACGACCTGACGCTGCACGTGCGCCGGCACACCGGGGACAAGCCCTACATCTGCGAGGTCTGCGGCGACCGCTTCATCCAGGTTCGAACCCCAATCCCCACGCTCTGGGCCCTGTACACACAGGCCTCAAGCCGTACAAGTGCACGTTCGAACCCCAATCCCCACGCTCTGGGCCCTGTACACACAGGCCTCAAGCCGTACAAGTGCACGTACTGCGAGAAGGCGTTCTCGCAGAGCAACGACCTGACGCTGCACGTGCGCCGGCACACCGGGGACAAGCCCTACATCTGCGAGGTCTGCGGCGACCGCTTCATCCAGAGCAACGACCTGACGCTGCACGTGCGCCGGCACACCGGGGACAAGCCCTACATCTGCGAGGTCTGCGGCGACCGCTTCATCCAGGTTCGAACACCAGTCCCCATGCTCAGAGccctgtttaataaataa
Protein Sequence
MASSAQVTKIKIEDVCRTCLAKENELHSVFDVSIGATTLDCVIAEITGIKIEHSDGLPSTVCHMCKEKASKAYEFRKQSQEANTTLYNVFKKEENELSLQDSTTCQPSAASIKTENLPTDDSDYVDWIGLDDFNSIDAVKDESDNEKISPYQCKNCNSVFKNDDKLQQHITKKCLKVEFDDAGSNFCPLCGTNYYDAVNLTTHMWDNHADLMGPKKRGRPKKILTTTILTKLSENGFRLKAVTVEQYDCMLCKEHCKTKEELAIHLMDHKGTKVLCCLLCKKMYLKTKHFNRHACADDTANMKKDSEDTNEKNKQNFVSEIALEDLLEPSGITENVTLLQVCEICSGVFTSEGELMGHNDAEHPERSLRCNLCLKVFASVKSAAKHRNLCKQVERKHKCSTCGLKFAYEISLNKHILRYHEGQSVSVKFMDTKSKEEEKQYQCDTCSKQFSRKELLAKHTRTHSDKLYECDICKKKFNRSDNLRSHKKIHDPREKTKANTCLCLYCGRSFNNSSNLIVHMRRHTGEKPYKCDFCGKGFPRSSDLQCHRRSHTGEKPCVCRVCGKGFSRSNKLSRHMRVHTGLKPYKCTYCEKAFSQSNDLTLHVRRHTGDKPYICEVCGDRFIQSNDLTLHVRRHTGDKPYICEVCGDRFIQVRTPIPTLWALYTQASSRTSARSNPNPHALGPVHTGLKPYKCTYCEKAFSQSNDLTLHVRRHTGDKPYICEVCGDRFIQSNDLTLHVRRHTGDKPYICEVCGDRFIQVRTPIPTLWALYTQASSRTSARSNPNPHALGPVHTGLKPYKCTYCEKAFSQSNDLTLHVRRHTGDKPYICEVCGDRFIQSNDLTLHVRRHTGDKPYICEVCGDRFIQVRTPVPMLRALFNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-