Ufer000970.1
Basic Information
- Insect
- Udea ferrugalis
- Gene Symbol
- -
- Assembly
- GCA_950022985.1
- Location
- OX465515.1:15473210-15475543[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.9e-10 5.6e-07 30.0 0.0 1 40 14 53 14 58 0.93 2 2 8.1 1.2e+04 -3.0 0.0 1 9 349 357 349 358 0.88
Sequence Information
- Coding Sequence
- atgtctaccaaaaaacagaaaaaaaagactgtgactTATACGCCTGAATCCCTACAGCAAGCATTAAAGGAAATTCGCGAAGACCAAATACCGATCAGAGAAGCATCTCGTAAATTTGGGATTCCgagatgcacaattcaagatcgaaTAAGTGGCAGAAGGACTGAGGAACTGAAAAAACAAGGCCCGGAACCGGTTCTAGGAGAAAAAGGCGAAACAAAAGTAGTACAATGGCTCATAAATATAGCAAAATGCGGTTTTCCAGTCAAAAAACAAGAACTATTGGATACTGTGCAAAAAATTCTCaaagatttaaaaatgccgAACCCTTTTAAGGATGATCGTCCTGGTCAGACCTGGTATCTGAACTTTTTAAAAAGACATCCAGAAATCTCAGTTAGATCTGCCGAAGGCATCAATAAAGCTCGTGCTAGGGTGACAGAAGAGTCTATTCGAAGGTGGTTCCGCGAACTCGAAATATTTTTAGCGCAAGAGGGACACTCGGACGTACTTGAAGAACCCGCAAGAATGTTCAATGGCGATGAAAGTGGGTTTTCACTTTGCCCAAAAACAGGAAAAGTTCTTGGGCCCAAAGGTTATCGGAATTTGTATCAAATTACAGCTGGCAACGAAAAAGATAACCTGACAGTACTAGTCACATTTAACGCTTGTGGTGAGATGTGCCCGCCATTGATAGTTTTCCCATACATTCGACCTCCAAAGAGTATCACAGATAGCTTGCCAGAACACTGGAGTCTTGGGAGGAGCGAATCGGGATGGATGAatggtgatgtattttttgaatacaTAACAAATGATTTTCATGGTTGGATTGTGGCAAATAACATCAAGAAACCAGTTCTACTTTTGGTTGATGGTCATAAGTCGCATATGTCTTTGACGTTGAGCTCTATCTGCGAAGAGCTAGGAATCATCTTGTATGCGTTACCCCCAAACACTACGCACATGCTGCAGCCTGCTGATGTCAGCGTGTTTGCTCCCTTGAAAGCCCAGTGGAAGAGCCACGTACGTAAATTCCTTGCAAAGCCAGAAAATATGAACAAAGCTGTTACAAAAACGAATTTTTGTCATCTTTATAAAGACATAATTGAAAATCCTCAAATAAAGACACATATTGTAAATGGATTTAGACGATGTGGTCTTTTCCCGTTCAATCCAAACGCAGTGGACTACACGAAATGTGTCCAAAACACTTTGGAACATTTCAATCGACCGACTGGTTCACGTGAGAACTCGGGAATAACGAATGAAGACTTGATTGCTACCCGTAAAGTGATTCGTCATTTGAGACCTGTTCTAAAACAGAAGAACATTGAcacaaaattcatttttaaggaAATCAAAAAGTTGAGGAAGTCAGAACCCAGAGAACCTCAATATATAACCGGATCCGAAGACAACACAAACTCGACACTTGACCGGTCGAGCGCTCTTAACATTTTGTCAAAGGTTTCGACTCATACATCGGCGATTGCTTTGAATTTTGCCACTCCACATGTATCCGATGTTACCTCTGCAAATGTCTCTAATCTCGCTCCGTCGCAAATTTACAATCCTGATCCAATGACTCTTGTCATTGCTCCTGAAGTTCCAGACCCAACCTCCGAGAGTGTTCCGAATCATGGCGACTCTAATTTGCTTACATCTGGTTTTAGCGGTCTTGAGCTGGGAACAGTTATTTCACTGGACGATATTGTGGTCTTACCGTTCCAAACCAGTACACCCAATAACCGAAACATAAGCACGAAAATTGATGCTAATCATGACGCTCAGTCCAAAATAGTACCCTCTTCGACAATCACATCCGCATCCGCCGTAAACAAAAATCCAAAAGATCCTGACATAGTTTTCGAGCAACATCTGTTTGTCCCTCAACCTATAGAAAAGTCCAAACAAAACGTTACTAAAGCTCGTATTCCGTCGGCAATATCCGGGAGAAAATGGCGAGAGTACCATCTTCTTAAAGAAAAAATCAAACAAGAAAAGAATGAAGAGAAAGAGAAGGCTAAAGTGGCAAGAAAACAAGCCGTAAAGCGTAAGCAAGAGGAAGCGAgggaaaagaaagaaatacaaaaagCCAAGAAACTCAGAAAAGGAACACTCCCGATGACAAAAAAGTTagttattcaacaaaattgTGGCCAATGTGCAAATGTTTTAAACAGTGACACTGAGGAcgatgaaaacaaaaatgttggTTGTGATTTTTGCACTAAATGGTTTCACTTGAAGTGCACTGATTTTATAGGACTAACATATGATGATGTTAAAGATAAACCATTCAAGTGTAATATGTGCATTATTGATATGTAG
- Protein Sequence
- MSTKKQKKKTVTYTPESLQQALKEIREDQIPIREASRKFGIPRCTIQDRISGRRTEELKKQGPEPVLGEKGETKVVQWLINIAKCGFPVKKQELLDTVQKILKDLKMPNPFKDDRPGQTWYLNFLKRHPEISVRSAEGINKARARVTEESIRRWFRELEIFLAQEGHSDVLEEPARMFNGDESGFSLCPKTGKVLGPKGYRNLYQITAGNEKDNLTVLVTFNACGEMCPPLIVFPYIRPPKSITDSLPEHWSLGRSESGWMNGDVFFEYITNDFHGWIVANNIKKPVLLLVDGHKSHMSLTLSSICEELGIILYALPPNTTHMLQPADVSVFAPLKAQWKSHVRKFLAKPENMNKAVTKTNFCHLYKDIIENPQIKTHIVNGFRRCGLFPFNPNAVDYTKCVQNTLEHFNRPTGSRENSGITNEDLIATRKVIRHLRPVLKQKNIDTKFIFKEIKKLRKSEPREPQYITGSEDNTNSTLDRSSALNILSKVSTHTSAIALNFATPHVSDVTSANVSNLAPSQIYNPDPMTLVIAPEVPDPTSESVPNHGDSNLLTSGFSGLELGTVISLDDIVVLPFQTSTPNNRNISTKIDANHDAQSKIVPSSTITSASAVNKNPKDPDIVFEQHLFVPQPIEKSKQNVTKARIPSAISGRKWREYHLLKEKIKQEKNEEKEKAKVARKQAVKRKQEEAREKKEIQKAKKLRKGTLPMTKKLVIQQNCGQCANVLNSDTEDDENKNVGCDFCTKWFHLKCTDFIGLTYDDVKDKPFKCNMCIIDM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00682349; iTF_00682350; iTF_00682351; iTF_00682352;
- 90% Identity
- -
- 80% Identity
- -