Ufer020754.1
Basic Information
- Insect
- Udea ferrugalis
- Gene Symbol
- -
- Assembly
- GCA_950022985.1
- Location
- OX465534.1:1021713-1022393[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.2e-13 1.3e-09 38.4 0.0 1 38 7 45 7 50 0.89
Sequence Information
- Coding Sequence
- ATGTCAAACAAAAAGTACTCCAACGAGGACCTCGCCAAAGCTTTAGAGGATATAAAAAATGGAACCATGACCATATATCGTGCATCTAAGGTATATAACATACCCAACCAGACCTTGCatgacaaaattaataaaaaatacaaaaaacaagaGTCAGCAGGAGCTCCAACAGCCCTGTCATCGACAGAAGAAGGTTTGTTGGTAAAATGGGTACTGCATATGGCCGAAATTGGATTTCCAGTTACGAAAGATCAACTGCTACACTCGGTAGCTAAATTACTCATAGGATTGAAGCGACAAAATCCATTCAAGGACGGAGTCCCTGGCAGACATTGGTACGAGGCCTTTCTGAAAAGAAACCCAATGATAAGCAAGAGAGTATGTCAAGCATTGACTACTGCCCGTGTAAACGCTACTGAAGAAAAAATAAGGGGCTGGTTTCAACGAGTCCGAAAATATTTCGAAGACAACAATCTCATGGCTGTGTTGGAAGACCCCTCACGCGTGTTCAACTGCGATGAGTCTGCCTTTTTTTTGTGTCCGAAAGGTCAACCAGTCCTTGCCAGAAAGGGGGTGAAAAATGTTCACTGCCGATCTGGTAATGATGATAAAGAAAATCTAACGCTCTGTCTCGGCGCGTCAGCTGACGGGaaactaaggcccagactccaccggagctga
- Protein Sequence
- MSNKKYSNEDLAKALEDIKNGTMTIYRASKVYNIPNQTLHDKINKKYKKQESAGAPTALSSTEEGLLVKWVLHMAEIGFPVTKDQLLHSVAKLLIGLKRQNPFKDGVPGRHWYEAFLKRNPMISKRVCQALTTARVNATEEKIRGWFQRVRKYFEDNNLMAVLEDPSRVFNCDESAFFLCPKGQPVLARKGVKNVHCRSGNDDKENLTLCLGASADGKLRPRLHRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01020162; iTF_01020163; iTF_00896713; iTF_01020170; iTF_01076335; iTF_01338516; iTF_01338517; iTF_01502904; iTF_01020159; iTF_00654207; iTF_00654206;
- 90% Identity
- iTF_01020159;
- 80% Identity
- -