Basic Information

Insect: Tyria jacobaeae
Gene Symbol: ush
Assembly: GCA_947561695.1
Location: OX387213.1:2895649-2900707[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.007 0.57 11.3 0.2 1 20 107 126 107 128 0.94

2 9 1.6e-05 0.0013 19.5 1.7 1 23 166 188 166 188 0.99

3 9 0.065 5.2 8.2 0.4 3 20 219 236 218 238 0.92

4 9 0.0055 0.44 11.6 2.6 2 21 480 499 479 500 0.95

5 9 0.0063 0.51 11.4 0.2 3 20 529 546 527 548 0.91

6 9 1.2 93 4.3 0.0 2 23 577 598 576 598 0.94

7 9 0.0081 0.65 11.1 1.3 1 23 604 626 604 626 0.99

8 9 0.077 6.2 8.0 1.1 1 23 665 688 665 688 0.96

9 9 0.13 11 7.2 0.9 2 20 721 739 721 741 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.007	0.57	11.3	0.2	1	20	107	126	107	128	0.94
2	9	1.6e-05	0.0013	19.5	1.7	1	23	166	188	166	188	0.99
3	9	0.065	5.2	8.2	0.4	3	20	219	236	218	238	0.92
4	9	0.0055	0.44	11.6	2.6	2	21	480	499	479	500	0.95
5	9	0.0063	0.51	11.4	0.2	3	20	529	546	527	548	0.91
6	9	1.2	93	4.3	0.0	2	23	577	598	576	598	0.94
7	9	0.0081	0.65	11.1	1.3	1	23	604	626	604	626	0.99
8	9	0.077	6.2	8.0	1.1	1	23	665	688	665	688	0.96
9	9	0.13	11	7.2	0.9	2	20	721	739	721	741	0.92

Sequence Information

Coding Sequence: ATGGCCGCTTTGTTTTTTCCTCTAAGTGAGGACGAGGAATGGGGAAACGAGGCGATGCCGGGAGAACCTCGCACGCCGAGCTCAGGGGCCGAGAGGGCTGCTTCCAGCGGAGGCGCATCACCTGCGTCTGGGGGATCGCCCGCTGCATCGCCGCCTCGGTTACGCCTAAATCCCAGTCTCGCTACAGATCCCGCATTAGCTCCGCAAGCAACATCGCTTAAACGGGAGCCACCTTCTCCGTCACCGCCGCCACCTCCAGTTACGCAGGCACGAACAGACTATCTAACCTTTCCAGCGTTTCTATCCTCTCCTCCAAGTTACATGTGTACACCTTGCGGTATTCGCTATTCGTCTCTTAGTACATTACGAGCACATCAAGAACACTACTGTTCAAATAGGAGGCCAAAACCAACAGAAGGTACGGATACACCCGCTGACCCGGCAGTAGATGAGTCCAGCAGTGATGCGAAGACACCCCGACCTCCTAGCAAGCAGTATACTTGTACATACTGTAACTACAGTGCTGATAAAAAAGTTAGTTTAAATAGACATATGAGAATGCATTCTTCGTCACCTATCAGCAGTGGAACCCCGGTACCTACACCAGCATCAAACGGTGAGGTCACCGAGGGTCCACCTATACAGGACCGTTATTGCGCCGATTGTGATATTCGCTTCAGCTCTATCAAAACATATAGGGCTCACAAAGAGCACTACTGTAGCACTAGACAGGTTGTGAAACAAGTTTTAGCAACGGCTAGAGGCGGTTCTGCTACGTCAGGGTCCTCGCCACCATCGCCAGGAGCCACTCCTCCCGCACAAAACTCACAATATGCCCTTGCTTTGCCAACAAATCCCATTCTTATAGTTCCCTATTCTTTACTACGAGGAGCAAGCACTCTTCCAGGTGCGACCTTACCTGATCCAGACACGCCTTGCTTTTTGTTACCAAATGGAACATTTCAACCAATAAGTCGTGCTTTATCGTCTGGCGTTAGCACAGATGGAAAGGAGTCTGATGTTTTAAAAGCAGCCAATCGCCCAAGAGAGCCATCGAGAGATGGTGCAACTCCCTTGGATCTTAGCGTGCGCCGCTCTCCCGCATCTGTAGTAACAGATGAACATGAGAAGGAAAACAGAATACGATCGGCGACACCTGAGCAAATTGTATGCGCACCATCACTACCAGGATCTCCAGGTACCCCGTCTCCTTCCCGAAGATCTTCATCACCGAGTGGAGAGAGTTCACCAAAACGAAAGCGGCGCAACTCTAGGGGGCCCACTCCAAAACCCCCTAGTGTGCCATCGCCTTCAGAAGAGAAGTTTGTTCCTGTAATATCACCTGCTATAATACCTCCTGCTCTGGCACTGCGCCTGGCGACAGAGTTGCCTATAAATGCAGTATCTCCACAGGTTCTTGTAAAGCAAGGAGTATCAAAATGTAAGGAATGCAACATCGTTTTCTGTAAATACGAGAACTATCGTGTTCATAAACGGAACTACTGCTCAGCTGGTGGAGGTGAGGAGCGCATCAGTCCAGCACCAACAGAGCCGGGCCCTCCACCTCAATACCGCCAGTTAATTTGCGTGGCATGCGGCATCCATTTTAGTTCGTTAGACAATCTGACGACGCACCAATCTTTCTACTGCACAAAACGAGAGACTCGGTCGCCTCGCAGTGCCCCGGTAGAGGCTCCTAGACCAACGTCAGGGTCAGAAGGTGGTTGGAAATGTCCCTGCTGTGACGTGGTGTCTCCGACTGCAGCTGCTGCTCAACGCCACATGGAGGCCCACGCTGGAGTCAAGGCGTTCCGGTGTACTATTTGCCGATACAGAGGGAACACGCTGCGCGGCATGCGTACACATATACGCATGCACTTTAACAACAAGAAGCCTGCTGACTTGCAGGAGGAAAGCTACATCGCTTGCGTTGTTGAAGAGGACAGCCGAGAGGCGACATCTCCGAGTCCAGCAGTTGGAGGCGAGCGAGTCCATCGTTGCAGTAACTGTGCCTACACCTCTACTTACCGAGGCAATGTTGTCCGACATGCCCGCCTTGTCCATGCCACCGATGAACCTGAAGAAGAACAGACATCTCCTCCAGTTCCATCAGTGGACATCAAAAAAGAACCAGAACCAGAAATGGAAGAAACTCCAAACTATTGCAAGTCTTGCGACATATCATTCAAATATGTAAACACTTTTAAAGCACATAAGCAGTTCTATTGCACTGCCAATAACGCAGACGCTACGGCAAATAATAATGTACCGACGCCAACAAGAGTTACTGATACGCCTGTGCTATGA
Protein Sequence: MAALFFPLSEDEEWGNEAMPGEPRTPSSGAERAASSGGASPASGGSPAASPPRLRLNPSLATDPALAPQATSLKREPPSPSPPPPPVTQARTDYLTFPAFLSSPPSYMCTPCGIRYSSLSTLRAHQEHYCSNRRPKPTEGTDTPADPAVDESSSDAKTPRPPSKQYTCTYCNYSADKKVSLNRHMRMHSSSPISSGTPVPTPASNGEVTEGPPIQDRYCADCDIRFSSIKTYRAHKEHYCSTRQVVKQVLATARGGSATSGSSPPSPGATPPAQNSQYALALPTNPILIVPYSLLRGASTLPGATLPDPDTPCFLLPNGTFQPISRALSSGVSTDGKESDVLKAANRPREPSRDGATPLDLSVRRSPASVVTDEHEKENRIRSATPEQIVCAPSLPGSPGTPSPSRRSSSPSGESSPKRKRRNSRGPTPKPPSVPSPSEEKFVPVISPAIIPPALALRLATELPINAVSPQVLVKQGVSKCKECNIVFCKYENYRVHKRNYCSAGGGEERISPAPTEPGPPPQYRQLICVACGIHFSSLDNLTTHQSFYCTKRETRSPRSAPVEAPRPTSGSEGGWKCPCCDVVSPTAAAAQRHMEAHAGVKAFRCTICRYRGNTLRGMRTHIRMHFNNKKPADLQEESYIACVVEEDSREATSPSPAVGGERVHRCSNCAYTSTYRGNVVRHARLVHATDEPEEEQTSPPVPSVDIKKEPEPEMEETPNYCKSCDISFKYVNTFKAHKQFYCTANNADATANNNVPTPTRVTDTPVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00050390;
90% Identity: iTF_00405472;
80% Identity: -