Tjac008914.1
Basic Information
- Insect
- Tyria jacobaeae
- Gene Symbol
- -
- Assembly
- GCA_947561695.1
- Location
- OX387227.1:15283165-15288304[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0021 0.17 12.9 2.2 2 23 368 389 368 389 0.98 2 13 0.52 42 5.4 1.9 2 23 393 414 392 414 0.94 3 13 0.00058 0.047 14.7 1.1 3 23 421 442 419 442 0.94 4 13 1.8 1.4e+02 3.7 0.8 1 21 447 466 447 467 0.92 5 13 0.022 1.7 9.7 0.0 2 23 499 521 499 521 0.96 6 13 0.0012 0.095 13.7 2.5 1 21 557 577 557 578 0.92 7 13 0.012 0.96 10.5 0.6 1 23 586 609 586 609 0.96 8 13 0.13 10 7.3 1.7 2 23 615 637 614 637 0.92 9 13 0.0094 0.75 10.9 0.3 3 23 648 668 646 668 0.93 10 13 0.012 0.93 10.6 2.9 1 23 674 696 674 696 0.97 11 13 0.057 4.6 8.4 0.1 2 23 702 722 701 722 0.95 12 13 3.4e-05 0.0027 18.5 1.6 2 23 728 749 727 749 0.97 13 13 0.19 15 6.8 0.3 2 23 754 774 753 774 0.94
Sequence Information
- Coding Sequence
- ATGTTCAAAATATCTAGGAATAAACCAATTAATCCCTGTAAACTTTCAATTTTTGCAGCACGAAAAAAAAAACAATTGCAAGAGGCAACCCACGAGCCTGCTTCGTTAGATCATAAATATGGTGACGGTCGAACGTCTGTATGTGATAATCGAGATCATAGCCCCAACGAGGCTTTGGAAAATAAATGTACTGGCAAACCAACTGTTCCTGTGTATACGAAAAGTGATGCAATACGAGAGCTAACCCTCATAAATTTTGCCATGGAAGAGTTTGTGACCCCCAAAGATTGTGGGGTATCAGCTACGAAGCGTTCACCTGCCAAAAAAGTATTGCAATTAAGGTTAATCAATGACCTAATTCAAAATGAACCAATACATAGTAAAATTGATGAAGAGCACAGAGTTGTCATCACCACACAGGAAACTGAAATAAGTTCACCTCATAAATATAAAAACATACCATTTGAAGATTTGCTATCAAAAGAAAATGATATACCTCTCAGAGAACAGAATATGGAAGCAGAAGATACACCAATCGAAGAAGAATCGGACTTAACTAAGAAAGATATGTACTATTGGAAGAAAAAATTGATGTACATTTTGAACAACACACAGTTTTGTGGTATCTGTTTAGATGCTGGCGTCCACATGAACTCACTCACTGATAATTTTGAGATCATTGACAGTAAACAAACTCACAGAATGACATTACGAAATATTGCGGATGAAGTTTTTAAAGAGAGTGCATTTATATCCAATTCACAAATATGCAACAACTGCACAGATAAGCTAATTGAAGCATACATATTCATACAAAACGCTAAAGAGACATTGGAAGCACTGAACTCCCATATAGATGAAATGTATAAAAAAACATGTTACGTTGACAATAATGTTTTAAATGATACACAAAGTGGTAATCCAAAGATTTACAATGCTGTTATAGCTTTAACCAATAAAGAACTTCCTGAGAATATTGATGATACTGAAGCAAAAACAGCAGAAACCGAGGCTAAACCAAATAAACAAGATTATCAGGTTCGTCTACCCTCATACCGAGCATGGGACATACACGAAAGGACAACTCACAAACATAATAATAGATGTAGGATATGTCTCCAGAGTTACAAAACACAACAAGACTTGAGCACACATTACAAGACGCACTTAAAGTCGCGATGTACGTTCTGTCACAGAGTTGTCAGAGATGGTGAACTGTTGCGACATTTGACAACGCGTCACAAACATGCGATACATTTGTGTACTACTTGTAATGTTGTCTTCTACTCCCCGAAGGCTTTAGAGAGACATATCACCAAGAGTCATTACAGAAGCGATTATAAATGTGTGACGTGTCTGAAGAGCTTGTCAAGCGTAGAGCTGGAGCTGCATCAGTGCAGGTTCAAGTGTCCCGAGTGTGAGGAACTGCCCTGTGTCCACCACCAGCACTTGACGAGTTACAGAGAACAGCTGGCGAACCTCGCTCCAAGAGCCAAGTGTCTGCTCTGTCCCTACGTGAGTGCCAGCAAGGAGGCGCTCATAGCGCACGTCAACAGACTACACCTGAACCTGCAGCCTCACAGCTGTGACAGGTGCCAGCACAAGTTCTTTTGTAAAGCTGATTTAAATAACCATGTCTGTACGGCTGAGAAAGTCAACAAATATGTCCACATTTGTCAATATTGTGATAAGGAATTCAGCAATCTGTATTTTTACAAACGACATGAAAAGAGTTGTAAATGCATTCAAAGGAAGTATCAATGTGACGATTGTCCTGCTAATTTTGATTCGTCAAAAGGTCAGATGACACATCGAAAACTTAAACATGGCAAAAACACACTGTCTTGTAGTTTGTGTGACAGAGTATTTTTTAATGATAAGAAGAGAAAAAGGCATGAAAAGCAAGCCCACGGCATACAGACGGAAAGAAATAACATAAATTGTGTTGTGTGTCGAGCTAAATTTTATACGAAATCAGCTTTAAAACTACATCAGGGACTTCACAGACCTAATACTAAGTACCCCTGTAGAGTCTGCAAATTTAAATTCAACTCTTTACGACAGTTCAAGGCTCATAACCAGAGACACATTCGTTCATTTATAATGTGCGAAGTTTGTGGCAAAGTGATAAGTCGGATTCTATTTAAAAATCATGTGATGACCCATTCTCACTCAACAGTGTCGTGTAAAACATGCGGCAAATCCTTCCAGAACTTGACTTTGTTGAGATATCATCAGAAAATGCATCTGAAGAGTTTGCCTTGTCCTAGATGTAAAAAAATTATCAGTTCTTCTAAATTATGGTGGCACTTTAGGAATCACCTAATTAAAGATTCTTTTAGTTCTAAAGTGCACAGCTCATGGTGTTGA
- Protein Sequence
- MFKISRNKPINPCKLSIFAARKKKQLQEATHEPASLDHKYGDGRTSVCDNRDHSPNEALENKCTGKPTVPVYTKSDAIRELTLINFAMEEFVTPKDCGVSATKRSPAKKVLQLRLINDLIQNEPIHSKIDEEHRVVITTQETEISSPHKYKNIPFEDLLSKENDIPLREQNMEAEDTPIEEESDLTKKDMYYWKKKLMYILNNTQFCGICLDAGVHMNSLTDNFEIIDSKQTHRMTLRNIADEVFKESAFISNSQICNNCTDKLIEAYIFIQNAKETLEALNSHIDEMYKKTCYVDNNVLNDTQSGNPKIYNAVIALTNKELPENIDDTEAKTAETEAKPNKQDYQVRLPSYRAWDIHERTTHKHNNRCRICLQSYKTQQDLSTHYKTHLKSRCTFCHRVVRDGELLRHLTTRHKHAIHLCTTCNVVFYSPKALERHITKSHYRSDYKCVTCLKSLSSVELELHQCRFKCPECEELPCVHHQHLTSYREQLANLAPRAKCLLCPYVSASKEALIAHVNRLHLNLQPHSCDRCQHKFFCKADLNNHVCTAEKVNKYVHICQYCDKEFSNLYFYKRHEKSCKCIQRKYQCDDCPANFDSSKGQMTHRKLKHGKNTLSCSLCDRVFFNDKKRKRHEKQAHGIQTERNNINCVVCRAKFYTKSALKLHQGLHRPNTKYPCRVCKFKFNSLRQFKAHNQRHIRSFIMCEVCGKVISRILFKNHVMTHSHSTVSCKTCGKSFQNLTLLRYHQKMHLKSLPCPRCKKIISSSKLWWHFRNHLIKDSFSSKVHSSWC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -