Tjac008915.1
Basic Information
- Insect
- Tyria jacobaeae
- Gene Symbol
- -
- Assembly
- GCA_947561695.1
- Location
- OX387227.1:15290283-15296421[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.016 1.3 10.1 0.0 2 23 213 234 212 234 0.96 2 11 0.0013 0.1 13.6 6.0 1 23 240 263 240 263 0.96 3 11 1.5e-05 0.0012 19.6 2.5 1 23 539 561 539 561 0.98 4 11 0.0025 0.2 12.7 3.9 2 23 567 589 566 589 0.97 5 11 0.0012 0.1 13.6 0.3 2 23 598 619 597 619 0.95 6 11 0.011 0.88 10.7 5.0 2 23 623 644 622 644 0.97 7 11 0.23 19 6.5 1.1 2 23 658 680 657 680 0.96 8 11 0.00043 0.034 15.1 2.5 1 23 686 708 686 708 0.98 9 11 0.61 49 5.2 3.8 2 23 715 736 715 736 0.97 10 11 0.0019 0.16 13.0 0.5 1 23 742 765 742 765 0.95 11 11 0.0065 0.52 11.4 4.8 1 23 769 792 769 792 0.93
Sequence Information
- Coding Sequence
- ATGGACGACGATATTTTTATGGATTTGGATGTAATAAACGCTAAGAAAACTTATTCTAATAAGTTAAAGAAAGAGCCACAGCTTAGACAGTTTCTTTTTAAGAAGAAAAAAGTCGATGGTTTTGAGATTCCTCAACCTCTAACGACAAAAGTGGCCGTTAAATTTTTGTTAGAGGGATGTCTTAAGTCAAAAGTATGTCGGTACTGTCTAAATATAACACCTGGATTGTCTGAATTAGATCAGATAATGAAAATAGGTGGTACTGGAAACATATATAAAGTCACTATAAGGGACATTGTTGCTAGTTTCCACCCATTCAAGGTTGTAGATGATCCAAATTTTCCAAATAAAATATGTCAGAAATGTTTGGATAAAGCTCTTAGCGCATACCTCTTTACACAGCAGTGCGAAAGAGCAGAAAGAGCAATGCTGAATTGTTTTGATGATATGTATGAGAAATTTGAAAAATTGGATCCTATTGACCGTCCAAAGAAAAGAGGCAGACAGAAATTGAATCCCAACCATAACATATTACATGCAGAACACTACAGGGTCATAGATTATGCAGAACCTATTATAAATATTGTAAATGTTGGTTCGGAAACAGTTACTAAAGAGCCTGAATTAAATGATTTGGAGTGCAAAAAGTGCTGGCAAGTGTTGCCAAACTTGGAATCTTTAATCAACCATGAAAACATTCATCCAAAAACCATGTGGTATCATTGCCGATTATGTGGAAAATCCTTTCCGAAATGTAACCAGTTGAAAAGACATAATAATCGAGTCCATGTTCTAGGCAAAGAGCCAGCTCCACATTCAGACAAAGATTTTAAGTGCAAAGAATGCAGTCATGTTACAGATAACTTCATTCAACACTTACAACATGTAGAAAAACATAAGTTTAAGAGTATAATGCAGCATATAATTCAAAAGAGAATGGACCAGCTTTGTGTAGTATGTTACGACAAGGGAACAAAAATGATGGATTTGGACAAAATGGTTTGCATTCACGGTTGTCACCCAGACTTAATGGGTGACAAGACCCTGTACACCCTCTTGGCTACTACATTACCCAATATGAACCACATGACAAACTACCTTGGGACAAAAATATGTGATAAGTGCCTTAACCAAGCAATCACATCATATGTATTTATTCATCAATTTAATTTCGCGAGGGAAAGACTCGACACTTGTGTCAGCCTAATGCTTGCCAATATAAAAAAAATAGTACCTCATGCTAATGTCTTCGTTCAAATATCACCGCAAACAATAATGCCCGCCGTAGAAGATGCAGACGAGACCTTACTTTTAGATGAAAATGATTATGTTGATGAAAGTAAACTCAAAGTTGATGTGCTAGAAGATGAATTCAGAATGAAATCTGAGAGTGAAAGTGATGAAGGAGAGACAGAAGATAAACCTGTACTCGCTGCTGTAGAACCTGTAACAGATCTTAATGAACCTGATTTCATAGACAATCCTGCCAAAAATGCCACAAAAGCTTATAAAAATAAGAAGTTGTTAAATGGACTAAAAAATAATTACTCTATGGACATATGCAGTGAGTTCCTAACATTTAATAATAGAGTAACTAAAAAGTCTTGGTGCAAATTTACTTGTCCTTTATGTGGCAAACATTTCATTTCAGATTATTTCCTTAAAAGGCACATATTGAAACATATAAACAAAAAAGTTAAATGCACTATATGTCATAGAGAATATAAGTCTAAATTTTATTTATATGAACACAGAAAAATGACACATCTGTTAAAAAAGCAAAATTATGTATCTTGTGGGGTATGTGGCCGCTCCTTCTTTAGCGAAGTTACGTTGTATAAGCATGAAAAACTACACAAAGCTACAAAATGTCAGCTTTGTTGTAAGGCTTTTTCTACACAAACACAGTACAAGAGTCACATACAAAGGCATGCAGTCAAACTAAAACTCATAAACCAGAAACGAGCACAAACATGCAGTTTCTGTGAGAAAGAGTGTCCAAATGACAATGAACTTTCTCTACATGTAAACAAAGTTCATTTACAAATTAAACCTTACAGTTGCGATATGTGTGAGAGACAATTTTACACAGAAAGAAATTTAAAGTATCATAAAAAAGTTCATAGTATGTTTTCTAAGGAAACTTGTGAGTTTTGTAACAAAACTCTGAACTGCAGAAAGCAATTAGTTATTCACGTTAGAAAACATATAGGGGCCAAACCATTTTTGTGTCAAATATGTGGACAAGCCTTCTATTCCACGTACAAAGCCAGAGAACATATGAAGGTGTACCATGGAGGTAGATTTTGTTGTAGAATATGTAAGACTACTTTTGTAACCAAATATGGACTTAAAGATCATGTACATAATGAACACGGGTTCATTTAG
- Protein Sequence
- MDDDIFMDLDVINAKKTYSNKLKKEPQLRQFLFKKKKVDGFEIPQPLTTKVAVKFLLEGCLKSKVCRYCLNITPGLSELDQIMKIGGTGNIYKVTIRDIVASFHPFKVVDDPNFPNKICQKCLDKALSAYLFTQQCERAERAMLNCFDDMYEKFEKLDPIDRPKKRGRQKLNPNHNILHAEHYRVIDYAEPIINIVNVGSETVTKEPELNDLECKKCWQVLPNLESLINHENIHPKTMWYHCRLCGKSFPKCNQLKRHNNRVHVLGKEPAPHSDKDFKCKECSHVTDNFIQHLQHVEKHKFKSIMQHIIQKRMDQLCVVCYDKGTKMMDLDKMVCIHGCHPDLMGDKTLYTLLATTLPNMNHMTNYLGTKICDKCLNQAITSYVFIHQFNFARERLDTCVSLMLANIKKIVPHANVFVQISPQTIMPAVEDADETLLLDENDYVDESKLKVDVLEDEFRMKSESESDEGETEDKPVLAAVEPVTDLNEPDFIDNPAKNATKAYKNKKLLNGLKNNYSMDICSEFLTFNNRVTKKSWCKFTCPLCGKHFISDYFLKRHILKHINKKVKCTICHREYKSKFYLYEHRKMTHLLKKQNYVSCGVCGRSFFSEVTLYKHEKLHKATKCQLCCKAFSTQTQYKSHIQRHAVKLKLINQKRAQTCSFCEKECPNDNELSLHVNKVHLQIKPYSCDMCERQFYTERNLKYHKKVHSMFSKETCEFCNKTLNCRKQLVIHVRKHIGAKPFLCQICGQAFYSTYKAREHMKVYHGGRFCCRICKTTFVTKYGLKDHVHNEHGFI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00909255;
- 90% Identity
- -
- 80% Identity
- -