Basic Information

Insect: Tyria jacobaeae
Gene Symbol: -
Assembly: GCA_947561695.1
Location: OX387219.1:4200247-4209008[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 7.5 6e+02 1.7 0.1 1 23 184 207 184 207 0.77

2 7 0.0066 0.53 11.4 0.1 2 21 213 232 212 233 0.90

3 7 0.00017 0.013 16.4 0.3 1 23 273 295 273 295 0.96

4 7 0.0012 0.098 13.7 3.7 1 23 301 323 301 323 0.99

5 7 1.7e-05 0.0014 19.5 1.0 1 23 328 350 328 350 0.98

6 7 0.00035 0.028 15.4 0.8 3 23 358 379 357 379 0.97

7 7 3.4e-05 0.0027 18.5 1.7 2 23 387 409 386 409 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	7.5	6e+02	1.7	0.1	1	23	184	207	184	207	0.77
2	7	0.0066	0.53	11.4	0.1	2	21	213	232	212	233	0.90
3	7	0.00017	0.013	16.4	0.3	1	23	273	295	273	295	0.96
4	7	0.0012	0.098	13.7	3.7	1	23	301	323	301	323	0.99
5	7	1.7e-05	0.0014	19.5	1.0	1	23	328	350	328	350	0.98
6	7	0.00035	0.028	15.4	0.8	3	23	358	379	357	379	0.97
7	7	3.4e-05	0.0027	18.5	1.7	2	23	387	409	386	409	0.95

Sequence Information

Coding Sequence: ATGGAAGCTGAAGACGAAATGATTGTTTTGGTTGTGGTTGATGATGATGAGGAGAAATCAGCAAATACTGCCCAATCTGAAGTCAAAACTGAGCCAGAATATTCGCTGGAAGAGTCTCTGGAAGTGAATAATATTTTTAAAACTGCAGAAAAACTTGGTGAATACATTTCTGTGAAGACAGAACCAGAAGATGACTATGAGTGTGATTATCTTGATGATGAAGTATTGCAGGTAGTGTTAAAATCAGAACCACACCATGACAGTATTGAAGAATTTGACAGTCTAGATAGCAATCCCGGAAATGATACATACATCTCAGAGTATGTTCAGTATCAGGACACTGAATCGGATGCACAGCAGGACTCTGATAAACACCGTTTTACCATGCTCAAACCATGGCAACAGAAGTCTTTTGTTGCTGAACTGAGACAAGAGTACCAAGAACTGAGAGAGGATGAAGAACTGCTTATTAATACTTTGGAACAGATTATGCGAAGTGCTAAACCTCCACCACCCCCTAAAGATTATTTTATAATGGCGGGGGCTATGTTTGAATGTGTCATATGTGGGGGAATGACAGAAACTATACCAGCTGCCAGTAGACACTATCAAGAAAAACATGGACAACGTTATTTAGTGTGTTATGCATGTGGAGTTGACTTCAGGAGTGCTAGTAATCTGTACAAGCACGAGAAGCGTTGTGTGGCTCCGGACGCGAGCGTGGTACTGCGCGCTCGGGCCGCGTGCCTCGGCCGGAAGGGCAGAGGCCGGCCCTACCTGCAGCTCAATGCAGTCTCTAAGACTGATAAGATTAGGTTCCCGTGCGGGTTGTGTTCGGCGGTGTTCAGGACGCGGCGCAACCTGCAGTCGCATGAGAACCTGCACCGCGGCGAGCGCCCCTACCAGTGCCACGCCTGTCCCTGCGCATACACCTCTTACTCCGCACTCTCACGTCATACAATGAAACATACCGATGTCCAGTTTATATGCGACCACTGCAATCGCTCTTTTAAGATTAAAGCGGCCTTAGTGTCACACATGGATACACATAAACCGCTACGTAAGCATGGGTGTACGGAGTGCAGTCGTCGCTTCGCACAGAGGTCTGCCCTCCGGCTTCACTTCAACAAGGTCCATCGAAACTTGCCACCTCCTTGCGCTTGTCAGATTTGTCCTAAAAGGTACCCTCGTATGTCATTGCTGAAATCTCACATGAAAAGAGAACATGGAATGTCAATTATTACTAGAAAGATGTTTTTCAAATCATTACCAACAATGACGGAATTAGAAATAAAACAATCAAAAGTTGTTCTCAAATCTGAAGATGATACTTTAGAATATGGAGCTCCGTTTGATGCAGATGAAATATTCAAACAGAGTATGGAAAGAGATGGACAAACAGATGGTTCTGAAGAAGGAAATGACACCAGAAACACTTACATGGAGTTGACAGAAGAGAATTCTACTATGGATGTCTTGATGCAGTATGTGACAACAAGTAATAAAAGCCTGGGTTCAAATGTGGTATTTATACAAGGTGGAGAAATTGTTGAAAATGTCATTGTGGAAGAGAACCAGTCCAACTTGATTCTACAAGTAGAAGCCATGGTGGGGGAAAGTGAAGTTATGTATGAACCATTAAATATTAGTGGTGAAAGAGATAGCGTAAGAACTAAAGTAAAAAGTGGGGATCTCGTGTAA
Protein Sequence: MEAEDEMIVLVVVDDDEEKSANTAQSEVKTEPEYSLEESLEVNNIFKTAEKLGEYISVKTEPEDDYECDYLDDEVLQVVLKSEPHHDSIEEFDSLDSNPGNDTYISEYVQYQDTESDAQQDSDKHRFTMLKPWQQKSFVAELRQEYQELREDEELLINTLEQIMRSAKPPPPPKDYFIMAGAMFECVICGGMTETIPAASRHYQEKHGQRYLVCYACGVDFRSASNLYKHEKRCVAPDASVVLRARAACLGRKGRGRPYLQLNAVSKTDKIRFPCGLCSAVFRTRRNLQSHENLHRGERPYQCHACPCAYTSYSALSRHTMKHTDVQFICDHCNRSFKIKAALVSHMDTHKPLRKHGCTECSRRFAQRSALRLHFNKVHRNLPPPCACQICPKRYPRMSLLKSHMKREHGMSIITRKMFFKSLPTMTELEIKQSKVVLKSEDDTLEYGAPFDADEIFKQSMERDGQTDGSEEGNDTRNTYMELTEENSTMDVLMQYVTTSNKSLGSNVVFIQGGEIVENVIVEENQSNLILQVEAMVGESEVMYEPLNISGERDSVRTKVKSGDLV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00707348;
90% Identity: -
80% Identity: -