Basic Information

Insect: Tyria jacobaeae
Gene Symbol: -
Assembly: GCA_947561695.1
Location: OX387235.1:3944632-3966259[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 5.4 4.3e+02 2.2 3.3 1 23 211 233 211 233 0.90

2 16 2.8 2.3e+02 3.1 0.4 3 11 270 278 269 282 0.86

3 16 0.021 1.7 9.7 3.9 1 23 290 315 290 315 0.93

4 16 0.0089 0.72 10.9 0.7 2 23 332 354 331 354 0.94

5 16 0.055 4.4 8.5 0.1 2 20 392 410 391 412 0.95

6 16 1 82 4.5 0.4 1 12 416 427 416 438 0.79

7 16 2.8 2.3e+02 3.1 2.5 1 23 686 708 686 708 0.93

8 16 0.013 1.1 10.4 0.1 2 23 714 735 713 735 0.92

9 16 1.2 96 4.2 1.1 1 23 760 781 760 781 0.88

10 16 0.0042 0.34 12.0 1.3 3 23 825 845 825 845 0.95

11 16 2e-05 0.0016 19.3 0.7 2 23 861 882 860 882 0.97

12 16 3e-06 0.00024 21.9 2.2 1 23 888 910 888 910 0.98

13 16 0.00014 0.012 16.6 0.8 1 23 915 937 915 937 0.97

14 16 2.8 2.2e+02 3.1 0.7 3 23 945 966 944 966 0.91

15 16 0.044 3.6 8.7 0.4 1 20 973 992 973 993 0.90

16 16 0.0012 0.096 13.7 1.4 3 23 1005 1026 1004 1026 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	5.4	4.3e+02	2.2	3.3	1	23	211	233	211	233	0.90
2	16	2.8	2.3e+02	3.1	0.4	3	11	270	278	269	282	0.86
3	16	0.021	1.7	9.7	3.9	1	23	290	315	290	315	0.93
4	16	0.0089	0.72	10.9	0.7	2	23	332	354	331	354	0.94
5	16	0.055	4.4	8.5	0.1	2	20	392	410	391	412	0.95
6	16	1	82	4.5	0.4	1	12	416	427	416	438	0.79
7	16	2.8	2.3e+02	3.1	2.5	1	23	686	708	686	708	0.93
8	16	0.013	1.1	10.4	0.1	2	23	714	735	713	735	0.92
9	16	1.2	96	4.2	1.1	1	23	760	781	760	781	0.88
10	16	0.0042	0.34	12.0	1.3	3	23	825	845	825	845	0.95
11	16	2e-05	0.0016	19.3	0.7	2	23	861	882	860	882	0.97
12	16	3e-06	0.00024	21.9	2.2	1	23	888	910	888	910	0.98
13	16	0.00014	0.012	16.6	0.8	1	23	915	937	915	937	0.97
14	16	2.8	2.2e+02	3.1	0.7	3	23	945	966	944	966	0.91
15	16	0.044	3.6	8.7	0.4	1	20	973	992	973	993	0.90
16	16	0.0012	0.096	13.7	1.4	3	23	1005	1026	1004	1026	0.97

Sequence Information

Coding Sequence: ATGTCGAAAGTTACAAGCAAAAAGTCGAGAAAATCAAAGCTGACGCCTCGGAAATGTGATGTTGAAGAGGAAAAAATGGCAGACTTGCAGGGACCATCAAAGAAAATTGCAAGAAGAAAAAACCCAAAAAGACCGGTCTTGTCAAAGACACATGCCTGTGATGACTTTGAAGCTCTAATTGATTCACAAAAACAACTAAAAGAAGTTCCACCAAAAATGGAGTTCTCTGTAACGGTAGCAGTCGAAGAATATGATGATGACAGTTCTGATTTAATTATTGTTGAAACAAAAGACCAGACAGTTGACATAACATCTGATTCGGAAGCAAAAGATACTGAAATATCCATGAAAAATATGATGAAAAAGAATGAGTATACAATTGATTTACCAGGCAAGTTGCCAGATGATATATTATTAGGTAGAGATGAAATATTAAATGCGACAAATGAAATATTAGAAAATACAGATAATATTGCTGATAAAATACTCTGTATTGAAGTTAAAAATTGCATTGGACAGTATCGCACAAGTTTCATAGACGATCTCAATGCCAAAATTCAAAACGTCATCCTCAAATGGTTGAATTGGCAGAAATTAATACAATTGAAATCCAGAAGCTCACCTTTATTCTACAAATGTTATATCTGTAAAAAATCATGGTGGTACTTGCATGATTTCCGTGAACATTTAAAGAATCATGACGATTTTAAACTTGATATAGAAGAGTATACTATGCACGAAGCTAATGTTATAGCTTTTTTAAACACAAAAAATAAGGCCGCTAAAGATTTTTACACAGAAGGTCATTGTCCAAAATGTGGTTATGAATTTGTTTTCCATCAGGCATCTAAAAGAAAAAAATCTATATACATATGCCATGTGGATCAATGTAAAAAATTTTTTTCAACTTGTGTCGCTTTAAAAACACATGAAGATATGTTTCATACTGCTGCCGAGTTGACCGGTGAAGTATTAGAAACAGGCAAACGAATATATTGTAAAGTATGTAGTTTTGTATTCTATACACAAAAAACATATGAATCTCATGTGAATTTGATGCATACGGTCCGGTCAGATTGTGTTGTTCCTACAATTTCATTGCTATGTTCACTATGCGATGAACAACTTGTTATCGGGAAGTATCATACTTGTGAAGAAAATAAATACAGAGTGCAGTGTAATTTGTGCTATAGGAGTTTCCCTCGTGGAATTCAGTTTAGAATGCATATGGGTAATAAAGGTAATTACAAGTGTAAAATATGTGATGAAGTATTGCAAAGACAATGCGTTGAAGCCGTCCATCTCTTAAGTCATACGGATAAATTTGTTATATTGAAAAAGTGCTTACTGTGTGAGGATTTTGTTGTGTTTTTTGACTACCAGATGGCGTTTGACCACATTTCTACTCATTTGAACAAAAACTATGAAGGTAGCAACTACAAGCATATAAGCAATATAATAATTCCAAAATCATGTCTTAATCAACGTTTGGAACCGAAGTTGGAAATTAAAGAGGAACCAAGAGACATCATCTTAGCTCCCGAATTAAATATTAAACAAGAAATAATAGATGATTTTAAAACTGACCCAGGCGGTGATCACACACAAATTAAAGAGGAAATTGATATCCATGATAATTTTGATTCCGAGCACATACAAGAAGCATGTACCAAAAGAACAGAAGAAGATTTTTCTAGAATATTCGGTATAAAAATAGAAGCAAGCGACATTAATATAAAGCAAGAAATGCAAGTGGACGAAGAATCTGAATACGAGGACGATATTATAAAGCTAGATTTTAATTTTTTGACCACAATGCAAGAAACCATGGAAAGTTCATCGCAGGACTGTATTCCAAAAACTGAAGATACCACAGAGGCAGATAAGAAAGATGAGCAAGAAGATGAAGAGGACATGCAAGACGAGGACAATATAAAAAATAATAAATTTCCAAAAATTTATAGTTGCAGTAGATGTGGTTTTGATGGCGTACATAAAGAATATAGGGCTCATACTAAAGCTCATTGCTGTCAGAAATTATATGAGAGAACAAGTTATAATTGTACAAAGTGCTCAAACAATTTTGATACTTTTAATGAATATATAGATCATTTTACTCAGCATAATATTAATAAGTTGTCATGCCCGGAGTGCTATAAACGATTCGTATCCTACAAGGCAATAGAACAGCACATCGGGGCACATATAAAAATGACTTATGTGACCGTTCAAATTAAGTCAGTGATAAAGAAAAAAGCCAAAGAAAAAAGGTTTTATTACAAGTGTAAACTCTGCGAGGAGACAGTTGAGAAGAAAGACTTCTTTGAACACTGGGAGAAGCATTTGTCTTTTGTTGAGAAGAAGTCAGAAGATGTTGATAATTTAGGCATTGACCTGATCAATAACGAGATGCTTGCTGAATTGTTGGAACGCCTCCAATCTCAAGAAACGTTGTTCAACATGCGAAGAGGCTGTCCAATATGCGTCAGGCACTTCGAAAGGAAAAACGACTACAAACGCCATCTAGTGGAGCACCTGCTGAATCACGCCTACTCCCAACACTACCTATTCAAGTCTTGGAAGTGTCAAATTTGTGTCAAAGGTTTTAAAAAGCCGGATGAATATAAAAAGCACATGCGGGACCATGGTGATTTGAAGGATTACAAGTGTCAAATATGTGAGAAATATTTCAGTGATTCAAGTAATTATAGCAAGCATATAAAGTTACATAACAAAAATGCCTATACTTGTGATATTTGTAAGAAGAAATTTCAAGCGAAATTTTCACTCGAGAGACATATTGTGATACACGACACTCAGAAACCTATATTTTGTTCTCCATGTAAAAAGACATTCTACTGGGACTCGGCTTATAGAAAGCATTATAAGGTTGTACACGAGAGACAGGTACAAACATACGCTTGCAGAATATGCAAGAAGAGATTCAGGAGTTTAAAAGAGAAATGGGACCATCAATGGTATGTCCACAAGGAGAGAAAACAGAAGGCAGATTGTCCAAAATGCTCGAACTCGTACAGAAAATTTCGTGATTTACAAACACATATGAAAACGGCTCATTATAGTGATTTGAGGTATTATAAGATGGGAGCAAAATCAAAAAATGTTTCAATAGAGGATGAAGCAATCAAAGATGACACTCTGGAAACTTTATATGTTTATTAA
Protein Sequence: MSKVTSKKSRKSKLTPRKCDVEEEKMADLQGPSKKIARRKNPKRPVLSKTHACDDFEALIDSQKQLKEVPPKMEFSVTVAVEEYDDDSSDLIIVETKDQTVDITSDSEAKDTEISMKNMMKKNEYTIDLPGKLPDDILLGRDEILNATNEILENTDNIADKILCIEVKNCIGQYRTSFIDDLNAKIQNVILKWLNWQKLIQLKSRSSPLFYKCYICKKSWWYLHDFREHLKNHDDFKLDIEEYTMHEANVIAFLNTKNKAAKDFYTEGHCPKCGYEFVFHQASKRKKSIYICHVDQCKKFFSTCVALKTHEDMFHTAAELTGEVLETGKRIYCKVCSFVFYTQKTYESHVNLMHTVRSDCVVPTISLLCSLCDEQLVIGKYHTCEENKYRVQCNLCYRSFPRGIQFRMHMGNKGNYKCKICDEVLQRQCVEAVHLLSHTDKFVILKKCLLCEDFVVFFDYQMAFDHISTHLNKNYEGSNYKHISNIIIPKSCLNQRLEPKLEIKEEPRDIILAPELNIKQEIIDDFKTDPGGDHTQIKEEIDIHDNFDSEHIQEACTKRTEEDFSRIFGIKIEASDINIKQEMQVDEESEYEDDIIKLDFNFLTTMQETMESSSQDCIPKTEDTTEADKKDEQEDEEDMQDEDNIKNNKFPKIYSCSRCGFDGVHKEYRAHTKAHCCQKLYERTSYNCTKCSNNFDTFNEYIDHFTQHNINKLSCPECYKRFVSYKAIEQHIGAHIKMTYVTVQIKSVIKKKAKEKRFYYKCKLCEETVEKKDFFEHWEKHLSFVEKKSEDVDNLGIDLINNEMLAELLERLQSQETLFNMRRGCPICVRHFERKNDYKRHLVEHLLNHAYSQHYLFKSWKCQICVKGFKKPDEYKKHMRDHGDLKDYKCQICEKYFSDSSNYSKHIKLHNKNAYTCDICKKKFQAKFSLERHIVIHDTQKPIFCSPCKKTFYWDSAYRKHYKVVHERQVQTYACRICKKRFRSLKEKWDHQWYVHKERKQKADCPKCSNSYRKFRDLQTHMKTAHYSDLRYYKMGAKSKNVSIEDEAIKDDTLETLYVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -