Tjac000032.1
Basic Information
- Insect
- Tyria jacobaeae
- Gene Symbol
- Zbtb41
- Assembly
- GCA_947561695.1
- Location
- OX387235.1:386858-408956[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.47 38 5.5 0.9 3 23 67 87 65 87 0.94 2 15 3.6 2.9e+02 2.7 0.4 1 21 94 114 94 115 0.92 3 15 0.0038 0.3 12.1 1.1 2 23 182 204 181 204 0.94 4 15 0.00027 0.022 15.7 0.7 2 23 212 234 211 234 0.95 5 15 0.029 2.3 9.3 6.9 1 23 241 264 241 264 0.94 6 15 0.00026 0.021 15.7 1.3 2 23 272 294 271 294 0.96 7 15 0.0041 0.33 12.0 5.6 1 23 592 614 592 614 0.99 8 15 0.027 2.2 9.4 6.1 2 23 622 643 621 643 0.97 9 15 0.078 6.3 8.0 1.4 1 23 677 699 677 699 0.97 10 15 6.5e-06 0.00052 20.8 1.5 2 23 704 725 703 725 0.96 11 15 0.012 0.93 10.6 0.7 1 23 731 753 731 753 0.97 12 15 0.016 1.3 10.1 1.6 2 21 760 779 759 784 0.93 13 15 0.015 1.2 10.3 0.2 1 21 792 812 792 815 0.86 14 15 1 80 4.5 1.3 5 23 827 846 822 846 0.88 15 15 3e-05 0.0024 18.7 0.8 1 23 855 877 855 877 0.97
Sequence Information
- Coding Sequence
- ATGGAAACTGATCCACTCGAAGGTAGTAGCTATGATCTAGGAGTGACCGTCAAAACTGAAATAAAAGAAGAAGATGACGAGGACCAGTACAATACGATGGCGCTCCTAGAACTCGCCCAATGCGTACAAACCAATCAAGAACCAATAGAGTTCAATGCAACAGATGCCATGATGGATCCAAAAACTGGTTTAATGATATGCCTCCATTGCCTTGAAGACTTTGACTCCAATAATCTCTCTGATCACATGGTCACAAAACACAATTACCGTAGAATATTATTTAAATGTAATTTGTGTATGAATACCTTTCAAGAACGGAAATTGTTAGTCATCCACCGCCAAGAATGTCGCCCTGAACGGAAAGTGAGGAAACGTACTTCCTTCCAGCAAATAATGAAGGAAGTTGAGACTAAGTATTTCACTGAACAAAATGAGCAGGATTTATTAGAGATTGTGTCTTGTCCAATATGTTTACTGGACCTACCAAAGTATTGCTTGAAAGAGCATCTGTTAAACGAACATCAGAAACCAGATGTGGTGTTAACATGTGGGCGTTGTAATAGGAACTTTAAATCAAAGTTGACATTAAGAGAACATGTGAAGCTGGTTCATGAGGCTGTTGAGGATTCGCAGGAGTGTGAGCTTTGTGGGCAAAAGTTTAGAAGCTTGAAGTATTTGGCGAATCACAAGAGGAATGTGCATCCGAGTGGTAACAAAATCCACAAATGTGAAGTCTGTGGTAAAGAATTCAAGAGTCGTCTGTGCCTCCATCAGCATTCTAAGTATGTGCACCCACCGGAATCAGCCTCGGTGGAGTGTCCACACTGCCCCAATAAAGTGTTTAAGTCACGCATGAACTTGCAGCAGCACCTGAAGCTCCATGCACCTGGTCCATTGGTTTTATGCTGGGAGTGCGTCGCTAACATTCACAGATACATATCATTCAAGCGAAGGTGTGCGCTGGCGCACGAATATTTGCTCAAGTACATGGTGGCTCCTACACACATCACAAGTTTATCAAAGTTAACTATAGTAAGAAATAATATTGAAATAAATATAAGTCATACATTAGAAGAAATTGAAGACAAAGCAGAGATTTCAAGTGTCAAAGAAAATTCTCTATTTGCGAATAATCTGGCTCAACATTCTCAACAAGTATCACAATTAGAACCATATTATATTGATAAGATAACAAGTAAATGTGAACAGTCAGAAAACTGTCAGTCATACATAGAATGTAAAAGCAACGGAAAAAAATCAAAAGATCTTATATCTTCACTAACAAATAGAGGACAAACAGACATACAGTTTGTCAAAATTGAAGATGATGCAGCTTTAGGTGATGTAGAACAGTATTTCGTTGATGATGCATTTGATTATCAAGATGAAATTGATGATAAAAATGTTACTTCAGAACTAAAACCAAGATATGAAGAGAAAACAAAGGTCAAATCAAAAAGAACTAAAAAGAAGATTGTAGAAAATGAGTTTAATGATTCAGACGAAGAGCCGCTTAAGAAAAGGAAAATAAAAAAGACAGTCAAAGAGAGGAAACATAAAAGGAAGAAAGATGATGATGCATCTACCATGGATAAGAAACCTACGGGAAAGCGTGAGAAACCTGCTGGGGTCGTCTCCAACCCCAGGGTTCATAAGAAACTGAAGCAGCTGAATGTTGGTGAGGGGCAGCTAGAAATGGTTGTACTAAGCTGGGAAGAGGTGGAGGAAGAGAGACAGAAAGCCCTGTCTAGTATAGTGTTTACGCGTCACGAATATAGATGTCACGACTGTGTCGTGGGGTTCAACCACAAGTTTAAATTAGATAACCACATGAAGAAACATGATCCTTCGTCGGGTGAAATGGTATGCAGTGTCTGCAAAGTGAGATGTAGAGACTCGCACGCTTTGTGTGCTCATAGGAGAAGACATCGAGTCAGATGGCGTTGTTGTACGTGCGGCGACACGTCGTCCCGCGCGGCCGTGGCCGCCGACCACGTGGCGAGAGAACATCACGCGCCCCCTCCAACACATACATGTACCGTCTGCGGACACGCTGAACCAACTCTTGGCAAACTTCGCAATCACATAAAGAACCATGCGCAGAGGCAAAAGTGTGAGTTGTGCGGCAAAACGTTCAGGGACCGGACCTCGCTGCGGACGCATCTATTTATACACAAAGGGGAGAAGGAGTACTCGTGTCCTCGCTGTGACAAGAAGTTCCTTTTCAAGAAAGCGATGGAGGTACATCTTGTGACCCACGACGCACCCGCACATTTGTACTGCTATCAGTGCGATATGAATTTCAAGAATCGTATGTCATACACTCAACATATAAAGTACAGCTTGAAGCACATCGATCCTGCCAAACTGAAACACGCGTGTCCGCTGTGCGACAAGAAGTTTGTGAAGGCGATTCGCTTGCAGGAGCACAACCTGGCCGTGCACCTGAAGGCCACTCCCATACACTGCACTGTCGCCGCATGTAACTTTGCATGCTCGTCCCGGCCCGTACTCCGAACCCACATACGCATGGTACATCGCAACGCGCGAGCTCAGAGGAACCACGTCTGCGACGCGTGCGGCAAAACTTACACTACTAAGAAGGCTCTGGAGGGTCACCTCCGCAGTCACAGCGGCGAGCGTCCCTTCGCGTGCGCGCTCTGCGCCTCCACCTTCGGATACGAGGCCGCGCTCTACAACCACAACAAACTTGTACATCTGAAAGCTAAGACTTCTCGGGGTCCCACGCAACAACAACCCTTGACGCTTCAAGCTTCGGAACCAACGCTCACCATGCCTTAA
- Protein Sequence
- METDPLEGSSYDLGVTVKTEIKEEDDEDQYNTMALLELAQCVQTNQEPIEFNATDAMMDPKTGLMICLHCLEDFDSNNLSDHMVTKHNYRRILFKCNLCMNTFQERKLLVIHRQECRPERKVRKRTSFQQIMKEVETKYFTEQNEQDLLEIVSCPICLLDLPKYCLKEHLLNEHQKPDVVLTCGRCNRNFKSKLTLREHVKLVHEAVEDSQECELCGQKFRSLKYLANHKRNVHPSGNKIHKCEVCGKEFKSRLCLHQHSKYVHPPESASVECPHCPNKVFKSRMNLQQHLKLHAPGPLVLCWECVANIHRYISFKRRCALAHEYLLKYMVAPTHITSLSKLTIVRNNIEINISHTLEEIEDKAEISSVKENSLFANNLAQHSQQVSQLEPYYIDKITSKCEQSENCQSYIECKSNGKKSKDLISSLTNRGQTDIQFVKIEDDAALGDVEQYFVDDAFDYQDEIDDKNVTSELKPRYEEKTKVKSKRTKKKIVENEFNDSDEEPLKKRKIKKTVKERKHKRKKDDDASTMDKKPTGKREKPAGVVSNPRVHKKLKQLNVGEGQLEMVVLSWEEVEEERQKALSSIVFTRHEYRCHDCVVGFNHKFKLDNHMKKHDPSSGEMVCSVCKVRCRDSHALCAHRRRHRVRWRCCTCGDTSSRAAVAADHVAREHHAPPPTHTCTVCGHAEPTLGKLRNHIKNHAQRQKCELCGKTFRDRTSLRTHLFIHKGEKEYSCPRCDKKFLFKKAMEVHLVTHDAPAHLYCYQCDMNFKNRMSYTQHIKYSLKHIDPAKLKHACPLCDKKFVKAIRLQEHNLAVHLKATPIHCTVAACNFACSSRPVLRTHIRMVHRNARAQRNHVCDACGKTYTTKKALEGHLRSHSGERPFACALCASTFGYEAALYNHNKLVHLKAKTSRGPTQQQPLTLQASEPTLTMP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -