Tjac017086.1
Basic Information
- Insect
- Tyria jacobaeae
- Gene Symbol
- -
- Assembly
- GCA_947561695.1
- Location
- OX387237.1:1183896-1185491[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1 84 4.4 0.4 2 23 84 106 83 106 0.92 2 12 0.001 0.082 13.9 0.2 2 23 130 152 129 152 0.96 3 12 4.1e-05 0.0033 18.3 0.9 2 23 176 197 175 197 0.96 4 12 0.053 4.2 8.5 0.5 1 21 201 221 201 222 0.92 5 12 0.18 15 6.8 0.1 1 23 263 286 263 286 0.95 6 12 0.37 30 5.8 0.4 2 23 312 334 311 334 0.95 7 12 0.0013 0.11 13.6 0.5 2 23 358 379 357 379 0.95 8 12 8.7e-06 0.0007 20.4 0.0 1 23 383 406 383 406 0.97 9 12 0.092 7.4 7.8 0.6 1 23 410 433 410 433 0.97 10 12 1.6 1.3e+02 3.8 0.7 1 23 438 463 438 463 0.88 11 12 0.044 3.6 8.7 5.8 1 22 472 493 472 495 0.88 12 12 0.0026 0.21 12.6 0.2 1 23 505 528 505 528 0.96
Sequence Information
- Coding Sequence
- ATGTATCCAGTAACTCCGAAACTGTTTTGCCTTATAGAAGCTCAAGAAGATGTACTAGAATATAATACTGATGAACCTTATTTTCTTTTTTTAGGATCCACAAAGGATATCGGAATTAATGAGAACGAAAGCAAACCAAAACAAAGACTGTTTGAACGATCCGTTGTCCAGAACCCGCAAAGGCAAAACGCAGTTCTCGTGTTAAAACATTCCACTGCATTCCCATTTAAGACACGTTTTAATAGAATCGTATGCTCTTACTGTCACGATGAGTTCGAAAATATGAATATTTTGAGGGAACATATGAAAGCAGATCATCCTAATGCAGACTTTAACAGTGCTTTTTATAAGGTCACGGATGCGCTAAAAGTTGATATTACCGATCTTAAATGTAACATATGCTCTCAGGAGTTTCCAACAGTCGACAGCTTCATGTCTCACATATCACGCGAGCATTCTATACACGTTAATTTTGACGTACCGTTTGGAGTATTTCCATATAGGCAAGGTGTTTCAGGAAGGTGGATGTGTCTAGAGTGTGACAAAACATTCCAGAAGTTTTCGCAACTTAACGGACACTTGCGAACTCATATGAAGATTTTTACATGCGAAAAGTGCGGTGCCACATTTTTATCCGATCATGGTTTGAGGCAACACGAAAGAAATTTCCGGTGCTACAAGTCTTCCTATAATCCACGATTTGGTAAAGCTATGAAATATAAAAGCAATACAGAGATTATTCTAGAATGTTCTACAGCATGTCCGTTTCGGACTTGGGGTCAGAACTTCAACTGCGTGTTTTGCAGAGTTCAGTCTAATGATCCTGTAGGTTTGCGAGCTCATATGGCATCCAGGCACGCGAATTTCGATATTCAACTAGTTTTTAGTAGAAAGATCCGAAAAGAATTCTTAAAAGTTGATATAACAGATCTCCAATGTAAACTTTGTTTTATGCACATTGACACTATAGACGACCTTATCGTACATCTTAAGAACGATCATAAGCAGCCTATAAACGCTGACGTACAACCTGGCGTGTTGCCCTTTAAGCTAAATGACGACACTAATTGGAAATGTGCAATTTGCAAAATTCAATTTTCTGACTTCGTATCGCTAAAGAAACATACGTCAGAGCATTATCAGAATTATGTCTGTGACACCTGCGGTGAAGGTTTTATCACAGAATCAGCGCTTAAAGCCCATACGAAAATACCACATGACAATAAATACAACTGTAGTCGATGTATCGCGACTTTTACTACTCTAGAAGAGCGCAATATTCATATTAAAACACAGCATACAACTTTACCCTATATGTGTATGTATTGTAAAGAAAAACCCCGTTTCGCAACATGGGAACTTCGGAAAAGACACTTGATGGAGTTTCATAACTATAAACCAGGTGCTGAAATGTATGAGTGTACGACTTGTCATATGACATTCAAGACTCGTTCTCAAAAATATCATCATAATGTAAAAGCTCATCGAACGAAGAAAGAGACAGAATATAGTTACCCATGTGGCAGTTGTTCTCGAGCTTTCGCTTCGAAGTTGTCTCTGGATAAACATATCGCTAAAAAACATTTCCATGTATGA
- Protein Sequence
- MYPVTPKLFCLIEAQEDVLEYNTDEPYFLFLGSTKDIGINENESKPKQRLFERSVVQNPQRQNAVLVLKHSTAFPFKTRFNRIVCSYCHDEFENMNILREHMKADHPNADFNSAFYKVTDALKVDITDLKCNICSQEFPTVDSFMSHISREHSIHVNFDVPFGVFPYRQGVSGRWMCLECDKTFQKFSQLNGHLRTHMKIFTCEKCGATFLSDHGLRQHERNFRCYKSSYNPRFGKAMKYKSNTEIILECSTACPFRTWGQNFNCVFCRVQSNDPVGLRAHMASRHANFDIQLVFSRKIRKEFLKVDITDLQCKLCFMHIDTIDDLIVHLKNDHKQPINADVQPGVLPFKLNDDTNWKCAICKIQFSDFVSLKKHTSEHYQNYVCDTCGEGFITESALKAHTKIPHDNKYNCSRCIATFTTLEERNIHIKTQHTTLPYMCMYCKEKPRFATWELRKRHLMEFHNYKPGAEMYECTTCHMTFKTRSQKYHHNVKAHRTKKETEYSYPCGSCSRAFASKLSLDKHIAKKHFHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01072961;
- 90% Identity
- iTF_00123700;
- 80% Identity
- -