Basic Information

Insect: Tyria jacobaeae
Gene Symbol: -
Assembly: GCA_947561695.1
Location: OX387215.1:16645230-16653871[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.018 1.5 10.0 2.6 1 23 587 610 587 610 0.88

2 7 0.00036 0.029 15.3 3.1 3 23 629 649 628 649 0.98

3 7 0.00045 0.037 15.0 1.4 1 23 659 681 659 681 0.96

4 7 0.00012 0.0097 16.8 0.4 1 23 693 715 693 715 0.99

5 7 4.4e-06 0.00035 21.3 1.4 1 23 721 743 721 743 0.97

6 7 2.3e-07 1.8e-05 25.4 1.2 1 23 749 771 749 771 0.97

7 7 2e-06 0.00016 22.5 1.8 1 22 777 798 777 798 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.018	1.5	10.0	2.6	1	23	587	610	587	610	0.88
2	7	0.00036	0.029	15.3	3.1	3	23	629	649	628	649	0.98
3	7	0.00045	0.037	15.0	1.4	1	23	659	681	659	681	0.96
4	7	0.00012	0.0097	16.8	0.4	1	23	693	715	693	715	0.99
5	7	4.4e-06	0.00035	21.3	1.4	1	23	721	743	721	743	0.97
6	7	2.3e-07	1.8e-05	25.4	1.2	1	23	749	771	749	771	0.97
7	7	2e-06	0.00016	22.5	1.8	1	22	777	798	777	798	0.96

Sequence Information

Coding Sequence: ATGGAAGGATTCTGTAGAGGTTGTTTGATTAAATATGATGACCCTTCTGAAATGCTGCATTACACTGAGAAATATAGAAGGCTATTTGTGTACTCTACTGGTTTGCAAGTTAAAAGAAATGACACAATCACATTTCAGCTATGTAAAGACTGTTTAATGAACATGAAGGCCTCATGTAAGTTCAAAAAGCTATGTCGGGCATCTGACAAAAAGCTTAAAAGCTACTTAGCTCTAAGAGATGTGGGCGATGGTTTGGATTTTTCTTCATTTCTGAAGAACAATGAAGAAACATCAGCATTTCGTCTTCCAATGACAAGTGGTAGCAGTACACCAGACCATCACAATAAGTTAAGAGACGATGACAATGAATCAACATGCACAAGCATCCGTAACTTTATGACGGATATTTTGCAAGGTGAAGAGATGCCAGATACAGAAGCTCGCATAATCCGTGAAGTAATAGAAGAAGAGGCTGATGTATTGGATGACTCCTTGGACTCACATTGGTTACAAGACGACATATCTATTGATACAGAGTTTAGATTGGACTTTAGCCTTAGCCCATTTGCAACCCCAAATGCTGTAGATAATGATCACTGCTACACACCAAAGAGGTTTTGTGAACCAAAAGAGGAACAATTAAAAAAATATTTTACCTCTATAAGCCCTGCACAACACAAAGATGTGAACGATTTTACAGATATTATACGAAATAACCAAAGCGAAAAAGAATTATGTGCTCTGGGAACAGATGAGATTGACAATGAAATCTCTGGGAACAATTTTAATATGCCTGCTATAGAAAATGAGATTGATAATGAGAAAACAGCAAATCATTTTCTTGTTAACAATGAAAAATCGATAAGTAATTTAAATCTATCAATGATCGATAGCAAAAAATTAAATGATAGTTATGGTTTACCAATCATTACTAATGGAAAGTCAATCAATAATTTTAATGTACAAGTAACCAATGAAGAAAAATCTTTAAATCATTTAGATTTATCAAGTTTACCAAGCCTACCAAGTCTTGATACTGATAAATCAATAAATCATTTAGATTTACCTTTAAAAGATCATGAGAAATCATTAAACAGTTTAGATTTACTAAGCTTCAACAGTGAGAAATCCATTAATAATTTCGATCTACCAAGTTTATCGAGTATTGATGATGAAAGATCGATAAATAATTTAGATCTATCAACAATCGAGAATAATAATGAAAATTATGAGCAAAGATTAAAAACACCTAACTTTTATGTACCTACTGATGGCACAGCTTATGTTACAACAAGTAATGAAATTGAAGGAATAATAAATAGTAAGAAACAAGAAAAAGATAATCCATGTACCATAGACAAGAATTTGGAAAGAGCATTGGAAAATGAGGATAATAAAGAATTCTTACTAGACGAACTCCTAGTTTCCCCACAAGTTATTCATGATGCATCAGGAGCCTCTACTCCAACTATAACAAATATTTTATTTGGTGATAAACTCAGTCTAAATGAAGAAAAATCTAGCCCAAGTTCAATAAACTTGGAAAAAAATAATCAAGTTGATATTGAAATACTTGAAGAAATCTTCCAAGATCATACCAAGGAAATACATGTTGAGGATAAAAATGAAATCAGGGACATAAAACACGAATTTAAAGTTCCTTTTGATGTGGACGAAGTTGATACAGGCACAAAGGAAACAATTAAAAAGTATGCCTTCTCATCTGAGTTTGATACAGGACAATTTGATTTAGAAAATTTTATATGTAACATTTGTGATAAGAAGTTTGAAAGCTCCAAAGCAATATGTATGCATTTCGTTAAGAAACACAAAATAAAAATTATTAAGAAAAAAAATATGGATTATAAATATAAACCTCGAATATGTAACTTTTGTGGAAGAGAATATAGAGATTTGCAGAATTTTCATAGACATTTAAAAACACATAAGAATGATGTTAAGGATCCACAAGTATTTAAGTGTAATGTATGTAGTTTAGAATTTACTTCCCAATCAAAGTTAGATAAACATAAAAGTGCTCACAATGGTACAAACATTAAGAAACAAGTGGGGAAGTATGTTTGTACAGTTTGCGGTGCAACAAGTACAACGATAGGCAACTTTCGCCTGCACCAAAGGAGGCACACACAAAATTATAGACATATATGTGAACAATGTGATAAAGGATTCTACCGACTGTCAGATTTCACTATCCATATGAGAATTCACACTGGTGAAAAGCCTTTTCCTTGTACATATTGTGATAAGACCTTCGCACGAAAAGATGCTCTAACCAAACATGTAAAATATCACATTGATAACAAGCCTTTCCAGTGTGAACACTGTAACAAAAACTTTATAAATAGAAGTCAACTGAATTTGCATATGAAAATGGGCGTTAAGTGTAAGAAAAAACGAGGAATCTTTGTAGATAAAAAAACACTTGTAGAGTGCAGCAAAACCAAACCTAATGAAACTGATATTCAAGTAGATTCCAAGGAGACAGCGAAAGAAAATAATTATACTGTTGAAGACGAGATTGGAACAATTCAATTACCATATATAGACACTGAAGCAAGTAATTAA
Protein Sequence: MEGFCRGCLIKYDDPSEMLHYTEKYRRLFVYSTGLQVKRNDTITFQLCKDCLMNMKASCKFKKLCRASDKKLKSYLALRDVGDGLDFSSFLKNNEETSAFRLPMTSGSSTPDHHNKLRDDDNESTCTSIRNFMTDILQGEEMPDTEARIIREVIEEEADVLDDSLDSHWLQDDISIDTEFRLDFSLSPFATPNAVDNDHCYTPKRFCEPKEEQLKKYFTSISPAQHKDVNDFTDIIRNNQSEKELCALGTDEIDNEISGNNFNMPAIENEIDNEKTANHFLVNNEKSISNLNLSMIDSKKLNDSYGLPIITNGKSINNFNVQVTNEEKSLNHLDLSSLPSLPSLDTDKSINHLDLPLKDHEKSLNSLDLLSFNSEKSINNFDLPSLSSIDDERSINNLDLSTIENNNENYEQRLKTPNFYVPTDGTAYVTTSNEIEGIINSKKQEKDNPCTIDKNLERALENEDNKEFLLDELLVSPQVIHDASGASTPTITNILFGDKLSLNEEKSSPSSINLEKNNQVDIEILEEIFQDHTKEIHVEDKNEIRDIKHEFKVPFDVDEVDTGTKETIKKYAFSSEFDTGQFDLENFICNICDKKFESSKAICMHFVKKHKIKIIKKKNMDYKYKPRICNFCGREYRDLQNFHRHLKTHKNDVKDPQVFKCNVCSLEFTSQSKLDKHKSAHNGTNIKKQVGKYVCTVCGATSTTIGNFRLHQRRHTQNYRHICEQCDKGFYRLSDFTIHMRIHTGEKPFPCTYCDKTFARKDALTKHVKYHIDNKPFQCEHCNKNFINRSQLNLHMKMGVKCKKKRGIFVDKKTLVECSKTKPNETDIQVDSKETAKENNYTVEDEIGTIQLPYIDTEASN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -