Tjac017088.1
Basic Information
- Insect
- Tyria jacobaeae
- Gene Symbol
- -
- Assembly
- GCA_947561695.1
- Location
- OX387237.1:1188818-1205409[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 3.3 2.7e+02 2.9 0.9 2 23 59 81 58 81 0.95 2 31 0.55 44 5.3 0.1 2 19 153 170 152 172 0.94 3 31 1.4e-06 0.00011 22.9 0.6 1 23 178 201 178 201 0.94 4 31 3.9 3.2e+02 2.6 0.1 5 20 209 224 206 226 0.86 5 31 0.039 3.1 8.9 0.5 1 23 233 256 233 256 0.89 6 31 0.00032 0.026 15.5 0.9 1 23 265 288 265 288 0.95 7 31 0.3 24 6.2 0.0 2 23 331 353 330 353 0.94 8 31 6.6 5.3e+02 1.9 0.8 2 23 378 400 377 400 0.94 9 31 2.8e-05 0.0023 18.8 0.7 1 23 448 471 448 471 0.96 10 31 0.59 47 5.2 0.5 3 20 478 495 477 497 0.93 11 31 6.1 4.9e+02 2.0 4.8 3 23 506 527 504 527 0.90 12 31 0.00025 0.02 15.8 0.3 1 23 534 557 534 557 0.96 13 31 1.3 1e+02 4.2 3.0 1 20 562 581 562 583 0.93 14 31 1.7 1.4e+02 3.8 0.4 2 23 627 649 626 649 0.94 15 31 0.096 7.7 7.7 1.2 2 23 719 740 718 740 0.95 16 31 0.59 47 5.2 0.1 3 20 782 799 781 800 0.95 17 31 0.032 2.6 9.2 0.1 2 23 830 852 829 852 0.94 18 31 5.1 4.1e+02 2.3 0.7 3 23 876 897 874 897 0.93 19 31 0.0011 0.088 13.8 1.2 1 21 901 921 901 924 0.96 20 31 0.54 44 5.3 0.1 1 21 928 948 928 949 0.89 21 31 0.83 66 4.8 1.1 5 23 960 979 953 979 0.89 22 31 9.9 8e+02 1.4 0.1 1 12 986 997 986 999 0.85 23 31 0.16 13 7.0 0.1 2 23 1077 1099 1076 1099 0.94 24 31 1.8 1.4e+02 3.7 6.1 3 23 1127 1147 1125 1147 0.95 25 31 0.00027 0.021 15.7 1.7 1 21 1151 1171 1151 1174 0.96 26 31 0.07 5.7 8.1 0.2 1 21 1178 1198 1178 1199 0.93 27 31 3.5 2.8e+02 2.8 0.4 3 23 1208 1229 1206 1229 0.89 28 31 5.8e-05 0.0047 17.8 1.6 1 23 1236 1259 1236 1259 0.97 29 31 0.75 60 4.9 0.7 1 23 1264 1286 1264 1286 0.94 30 31 0.00012 0.0099 16.8 0.9 1 20 1292 1311 1292 1314 0.94 31 31 0.0014 0.11 13.5 3.9 1 23 1320 1342 1320 1343 0.95
Sequence Information
- Coding Sequence
- ATGCTAAGTGTCTTAAGACCAGAACGTGTAAGCGTCAGCTGCTATAATAAATGTGACAAAGGAGCATTTCTTTTTGTTCTAGAGTTCGATCCGTTGGTCGAAGCGCGACAAAACGCTAAGGTAGTATTGAGATACTCAACAGCGTATCCGTTCAGGATCCCCGCCAATGACATGGTGTGCGTATATTGCTGCGAGGCCTTCGAGGAGCCCCGGAGGTACAGAGACCACATGAAACGCGATCATAGTTCGTTCAACGTCGACACCGCATTCGCACACACCGTCAGCGCTGAGGAGTACATCAAAGTCGATTGTACGGAGCTTCAGTGCAGAATCTGTTCTACTGAACTCGACTCGGTTAACTCGATAGCAGAGCATCTACATCTAGAACATGACAAAAAGATTAACTTAGCTGCCGAAGTAGGGTTACAAGTGTTTAAACTGGGTCAGGAACGCTGGGTGTGTGCCGTCTGCTCGCTTAAATTCCCATCCTTAAGAGCTCTCAGCAGACACAACAGCTGTCATTATCATAAATACACTTGCGAAACATGTGGCAAGTCTTACATCAGCAAGGAAAACCTTAATAAGCATATACTATTTGGCCATTCGCAACAGAAAATTTGTATCAAGTGTCGGAAATCATTTCCGAATAGCGAAGCGCGACGCTTACATGTTTTGGCAACTAGACGCTGTTGGCCTTTCGCTTGCAATTTGTGTGGCGAACGGTTCGTGTCCAGAAAACTCAAATTTGCTCACAAGAGCGAAGTTCATAGCGTCGGCGTTACTAAAAAATGTCACACTTGTCCAGAATGCCAAAGAACTTTTGAGGAATGGAGACAGTATAGAGCTCATTATATCATTTCTCATacagatatgaactacgtatgtccattttgcgACCCAAACGACTTGAATAACGTCGCTAAACGGAACGCCGAGATTCTCGTGAAATATTCCACCGTTTACCCCTTCAAGCTGCCCGAAGAGAACATGGTGTGCGTCTATTGTGCCGACCCTTTCCAAGATCCTGTAGAATTCAGGGCCCATATGAATAAGGATCATAAAACTTTTAATCCTCGCATGGCTTTCCTCCATTGCTCAGAAGGGTACATCAAAGTTGACTGCACGGATATAAAATGTAGAATATGCTCTGAACAATGTCAGACTTTGAAAGAAATAGCTGAACACTTGCTCTCTAATCACAAAAAACCTTTAAACTTAACCGTTGAATGTGGATTGCAGCCTTTTAAACTGGAAAAAAATAAATTGTCATGTGCGATTTGTAAGGCAAAGTGTCTGTGCTTGAGGCAACTGAGCAGGCACACTCAAAGCCATTTCTGGAGATACACGTGCGAAGCTTGTGGCAAGTCGTATGCAACTAATACGACATTAAGAAGTCACATCAGATTTTCCCACATCAACAATGAGAGGATATGTAGAAAATGTAAATCCACGTTTAGTACTTTGGAGGAAAAGAGAAAGCATTTAGCTGAATCACCCAAATGTTGGTCCCATTTATGTTGTGTTTGCGGAGAGCGTTTCATGACTTACCATTTAAAACAACAGCACTTATCCGAAGTGCATGAAGTTAAAAAGAAAACTTTTATCTGTCCAGAATGTGGGGAAGTATTTATAGATAGAAAGCGTTACAGGGTGCACTTCAGAATATTTCACACTGATGATAATTACACGTGTTCGTGTTGCGGCATGAAATTTGAGACGAAACGGACTTTAGACgatcataggGAACATAGAACAAGAAGTGACCCCAATTTCTCTTTTGTTCTAGAACTAAATCCGATGCACATCGCAAAAAGGAACGCCCAGACTGTTATACAATATACTACTGCCTATCCATTTAGACTCCCGGAGAGTTCCATCGTATGCGTGTACTGCTGCCAAAGCTTTGTCGACGGTCCGCTCTTCAGGAACCACATGGATTCCGATCATAAAGACGTCAACGTCAGAGTGGCATACGCTCACTTACATGAAGGCTTTATTAAAGCAGACTGTACTCTTATCCGCTGCAGAATTTGCTCCCAAACCTTAGATATCGTAGATGAAGCGGCTAAGCACTTAAACGAAATCCATGACCAAGAAATAGACCTAGAATTCGGTATAGGAATACAACCCTTTTGGATGGAAAAAGATAAACTTTCTTGCGCAATTTGTAGATTAAACTGTTCGAATATTCGCAGTCTCAGCAGGCACATACAGGAGCATTTCTTTCAGTGCACGTGCGAACTTTGTGAGTTGGATCCACATAAAATGGCGAAACGGAACGCGGAGATAGTGTTGCAATACTCAACAGTGTATCCATTCAGATTACGGGGTCGAGTTTTGCTATGCGTCTACTGCAGCGAGGGATACGAAGATCCCATACATTTTAGGAGACACGTTGGTTGTAATCACAAAAAAATTAACGTGTCTGCAGCATTTGCTCACGTGGCTAAAGGAAAAGATTACCTCAAGGTTGACTGTGCTCAGTTAGAATGTAGATTATGTGGGGAACCATTCTCGAACGTTAAGAATACCGCTGAACATCTTAAACAAGAGCATGCTCTTAGAATAAACCTCGATTACGACATAGCGTTACAGTGTTACAAACTAGAAAAGGGAAAATGGTTTTGTCTTCTCTGCGATGTCAAGTTACCAAGTATTACTAAACTTTGTCGTCACACAGTAACAGCTCATTATCAAAAGTATACGTGTGATATCTGTGGCAAAACTTACATGACTATTGAAGGTTTAAGATACCACATAAGATGTAGTCACTCAGGAAAATTTTTATGCCGAAAATGCTGGAAGGAATTTCCCACAGCCGAAGAGAGAGTAGAGCATCTAAAGCTGTCCAAAAATTGCTGGAACTTCGGTTGTATATACTGCGGAGAAAGATTTCAATCTTGGGAGATGAAAAATAAACATTTAGTTAAGAAACATGACTGCCCAGAAATCAAGTATCCTTGCTCAGAATGTGACAGCATATTTGAAAACTTGGAACCACATTTAACGGCGAAACGGAACGCGGAGATTGTGTTACAATATTCGACCGTGTATCCGTTCAGATTGCGAGGAAAAGCTATGTTATGCGTCTACTGCTGTGAGGAGTACGAGGATCCCAATGATTTTAGGCGGCACGTTGATGATAATCACGAACAATTCACAGTATCTACTGCATTTGCACATATTGGCAGCGCAAAAGACTATCTCAAAGTTGACTGTACCAACTTAAAGTGTAGATTGTGTGCAGAATCCTTCTCCAGCATCGAGAATGTTGCGGAGCATCTTGCAAAAGAACACGACCGCAAAGGAATTCGAAATTTGTGTCTTGACTTTGATATAGGCCTACAACCGTACAAGTTAGAGAAGGACAAATGGTTTTGTTTTCACTGCAATAAGAAACTACCTACTATAACGAAACTCTGTCGGCATACAACGTCCCATTATCAGCAATATACTTGCGATATTTGTGGCAGAAGCTACATGACTAACGATGCTTTAAAATATCATATTAAGTGCAGCCATTCAGGAAATTATGTTTGTCGGAAATGCTGGAAAAAATTCCCTACTATAGAAGAAAAAAGAGAACATGTGAGAATATCAAAAAGCTGTTGGGCTTTTGGATGTGTTAACTGTGGAGATAGATTTCAGTCATGGGAGCAAAAACAGAAACATTTAGTGGAGAAACACGACTGTCCTGAAACGAGTTATCCTTGTCCCGAGTGTGAAAAGACATTTCAAACTAGGAAACAATTTTATAATCATTACAAAATGGCTCATACGGATGAAGGGTATATTTGTTCTTGTTGTGGGTTGAAATTTGGGGCCAAAAATCAACTAGAGGATCATAGGCTTGGGCATACCGGAGAGAAACAATTTAAGTGCTTAGTATGTTCAAAAGCTTTTACACGGAATAAGAGTCTTTCTCAGCACATGTGGATTCATAGTGATATCAAGCGTTTCGAATGCAAACCCTGCAATAAACAATTTAACCAAAAAGTCAGCTACAGGTCTCATATGAAAATACACCATTCTCATGTTATTGAGTAG
- Protein Sequence
- MLSVLRPERVSVSCYNKCDKGAFLFVLEFDPLVEARQNAKVVLRYSTAYPFRIPANDMVCVYCCEAFEEPRRYRDHMKRDHSSFNVDTAFAHTVSAEEYIKVDCTELQCRICSTELDSVNSIAEHLHLEHDKKINLAAEVGLQVFKLGQERWVCAVCSLKFPSLRALSRHNSCHYHKYTCETCGKSYISKENLNKHILFGHSQQKICIKCRKSFPNSEARRLHVLATRRCWPFACNLCGERFVSRKLKFAHKSEVHSVGVTKKCHTCPECQRTFEEWRQYRAHYIISHTDMNYVCPFCDPNDLNNVAKRNAEILVKYSTVYPFKLPEENMVCVYCADPFQDPVEFRAHMNKDHKTFNPRMAFLHCSEGYIKVDCTDIKCRICSEQCQTLKEIAEHLLSNHKKPLNLTVECGLQPFKLEKNKLSCAICKAKCLCLRQLSRHTQSHFWRYTCEACGKSYATNTTLRSHIRFSHINNERICRKCKSTFSTLEEKRKHLAESPKCWSHLCCVCGERFMTYHLKQQHLSEVHEVKKKTFICPECGEVFIDRKRYRVHFRIFHTDDNYTCSCCGMKFETKRTLDDHREHRTRSDPNFSFVLELNPMHIAKRNAQTVIQYTTAYPFRLPESSIVCVYCCQSFVDGPLFRNHMDSDHKDVNVRVAYAHLHEGFIKADCTLIRCRICSQTLDIVDEAAKHLNEIHDQEIDLEFGIGIQPFWMEKDKLSCAICRLNCSNIRSLSRHIQEHFFQCTCELCELDPHKMAKRNAEIVLQYSTVYPFRLRGRVLLCVYCSEGYEDPIHFRRHVGCNHKKINVSAAFAHVAKGKDYLKVDCAQLECRLCGEPFSNVKNTAEHLKQEHALRINLDYDIALQCYKLEKGKWFCLLCDVKLPSITKLCRHTVTAHYQKYTCDICGKTYMTIEGLRYHIRCSHSGKFLCRKCWKEFPTAEERVEHLKLSKNCWNFGCIYCGERFQSWEMKNKHLVKKHDCPEIKYPCSECDSIFENLEPHLTAKRNAEIVLQYSTVYPFRLRGKAMLCVYCCEEYEDPNDFRRHVDDNHEQFTVSTAFAHIGSAKDYLKVDCTNLKCRLCAESFSSIENVAEHLAKEHDRKGIRNLCLDFDIGLQPYKLEKDKWFCFHCNKKLPTITKLCRHTTSHYQQYTCDICGRSYMTNDALKYHIKCSHSGNYVCRKCWKKFPTIEEKREHVRISKSCWAFGCVNCGDRFQSWEQKQKHLVEKHDCPETSYPCPECEKTFQTRKQFYNHYKMAHTDEGYICSCCGLKFGAKNQLEDHRLGHTGEKQFKCLVCSKAFTRNKSLSQHMWIHSDIKRFECKPCNKQFNQKVSYRSHMKIHHSHVIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -