Tjac000787.1
Basic Information
- Insect
- Tyria jacobaeae
- Gene Symbol
- -
- Assembly
- GCA_947561695.1
- Location
- OX387222.1:5068349-5071271[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.1e-05 0.0009 20.1 5.9 1 23 269 291 269 291 0.96 2 10 0.00023 0.018 16.0 1.2 1 23 297 320 297 320 0.95 3 10 6.6e-05 0.0053 17.7 0.3 1 23 332 354 332 354 0.98 4 10 0.0019 0.15 13.1 2.2 1 23 361 383 361 383 0.97 5 10 0.00042 0.033 15.1 0.9 1 23 389 411 389 411 0.96 6 10 0.00077 0.062 14.3 0.6 1 23 417 440 417 440 0.97 7 10 0.0023 0.19 12.8 1.4 2 23 446 465 445 465 0.97 8 10 9.9e-06 0.00079 20.2 0.8 1 23 471 493 471 493 0.98 9 10 6.6e-06 0.00053 20.8 1.6 1 23 499 521 499 521 0.98 10 10 6.2e-05 0.005 17.7 0.3 1 23 527 550 527 550 0.97
Sequence Information
- Coding Sequence
- ATGGCTAACGTAAAGCGTAGATTAAATGCACCCAAAAGTGCACATAAAAATGAATCTAAAAAGAAGCAGACTAATTGTTGTACAAAAAAAGATTTGAGATCATTGCGATCTGTGATTGACAATCAAATATTGAATAGCATTAAAAGCAGTGAACCAGAGCCTCGAGTCACCAAGCAACGCAAAAATAATATTAATGATAAGATGACTTTAGTGACTCCATATGAAAAATATAATTTCTTACAAAAACTCACAGCAAAGTTGAATCTAAAAAAGACATCTAGTGTTAGAACAACTAGACAATCTAAACAGACTGACATTGATACACCTACACCTGAATTACCAGGTCTAATGAAGACTAAAACTAGTCACCTTAGGAGTACTAAGTATTTGAAAATCATGGACAATGTAATAAAAAACGAATTAGGTATTTCAAATAAAAGAAATAATGCATCTTCAAAAATAAGGGTCACCAATAATAATGAAAGTGAAATAATTAACCAAAACAATAAAATTGAGAAATATACTAAATTACCTGAGAAAAATAATAAAACCACACCACAACTTAAGAAAGCTGCCGCTGTGGATTCACTACATTTATTGGATGGTCCTGAAAATATTCAGCCCGCTTCAGATAAGTCAATTCAGCAACAAACTGAACTAGTCAATTTTACAGATGAACCTAAAGCATTGTCACCACCACCACTCCGTAGGAAAGGCAGACCAAAAAAGAATCCAGAAGTTACAAAGGCACTGAAACCAAAACGAGTTACACTTACCAATGGTGTAGTATTTTCACTGCCCTTATTTGAATGTGACTATTGCCACAAGACATTTAATAGAAAACACTCTCTGGTGAGACACATATACCTACATCTTGACAGGCAGCCGCACATTTGTCCAGTTTGTCCAAAAAAATTCCGTATTCTTAAGAATATGAAAAGTCACATGGACCGTGATCACTGCGTTCCTAATGTTGATGAAAATACAGAAACATATTCCTGCAATATCTGTGACAAACCATTTTTAACCGAAGAGAATTTAAAGTTACACATAACAAGTCATGCCAAAGGTGAAAATTCATTTAAATGTATCTATTGTGACAAGAAATTTTCTTACCAGCTGTTGTTAATTCAGCATGAGAAAAAACATTTGGTCACTGGAAAATATCTATGTACATTGTGTGACATAAAATTTAATACTCGGGATAAACTCTATGTGCATGTAAAGAGCCATTTGAAACTAATTGATTATATTTGTCAGTATTGTGGTAGAGAATTTTTAAGAGCTAATTCAATGAAAAGGCATGTGCTGACAATGCACAGAGGCCGTACAATACAGTGTCCAATTTGTAACAAAAACCTGAAAGGTCACCTAACTGAACACATGCGTACACATGACAACAAGCGTCCACATAAGTGTCCTGACTGTGGAAAGCTTTTTGCACAGGCTACTCAGATGAAGGTACACCGTCGTGGTCATACTGGCTTTCGTCCGTACTCATGCAGAATATGTGACCGTCCATTCTCTCATTCTAATGCACTGATGTTACATCTCAGACGACACACTGGTGAGAAACCGTTCCCCTGTGCTGAGTGCCCTATGTCCTTCTCTCAATTACCACATATGAAGGCACATATGTCAAAGATACATGGTAAAGTGAATCCTTACAAATGTCTGAAATGTTATGACTACTTCAAACTGAAGAAGGAACTTCTTTTTCATAAAAAAACCTGCAGTGGTACTGGTATTGATACTGATTTATATGGAGATGAAAGGCCATTTGGAGATGGCTCACAAGATATTGACGCTGAAGTAGTTCCAGTGGAATCCACCATGACATTGTCTCGAATGAGGTTTCTATTGGCTCTTCTACTGACAATGATTGCTAGCAAAGAAAAACTGAAATATTTAGGGTTCAACAAACGCCTTGTAGATGATTTGCTTGTCGAGTCATTGGAGGCAATGGATCAAGTCCCATGTAAAGACGAGAACATGTCTCCTCTAGTGCGTCTCAGGACTAACATTGAGAAGTTGCTGAAAGGTACAGTTCCTCCAGAACAGATGGAGAAGTTCAGGAAGGAGAATAAGTCAACTGAAGAACTCCTCGAGCTGTTGACAAGCGAGAAAGATAAGTAA
- Protein Sequence
- MANVKRRLNAPKSAHKNESKKKQTNCCTKKDLRSLRSVIDNQILNSIKSSEPEPRVTKQRKNNINDKMTLVTPYEKYNFLQKLTAKLNLKKTSSVRTTRQSKQTDIDTPTPELPGLMKTKTSHLRSTKYLKIMDNVIKNELGISNKRNNASSKIRVTNNNESEIINQNNKIEKYTKLPEKNNKTTPQLKKAAAVDSLHLLDGPENIQPASDKSIQQQTELVNFTDEPKALSPPPLRRKGRPKKNPEVTKALKPKRVTLTNGVVFSLPLFECDYCHKTFNRKHSLVRHIYLHLDRQPHICPVCPKKFRILKNMKSHMDRDHCVPNVDENTETYSCNICDKPFLTEENLKLHITSHAKGENSFKCIYCDKKFSYQLLLIQHEKKHLVTGKYLCTLCDIKFNTRDKLYVHVKSHLKLIDYICQYCGREFLRANSMKRHVLTMHRGRTIQCPICNKNLKGHLTEHMRTHDNKRPHKCPDCGKLFAQATQMKVHRRGHTGFRPYSCRICDRPFSHSNALMLHLRRHTGEKPFPCAECPMSFSQLPHMKAHMSKIHGKVNPYKCLKCYDYFKLKKELLFHKKTCSGTGIDTDLYGDERPFGDGSQDIDAEVVPVESTMTLSRMRFLLALLLTMIASKEKLKYLGFNKRLVDDLLVESLEAMDQVPCKDENMSPLVRLRTNIEKLLKGTVPPEQMEKFRKENKSTEELLELLTSEKDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00157443;
- 90% Identity
- -
- 80% Identity
- -