Basic Information

Insect: Tyria jacobaeae
Gene Symbol: -
Assembly: GCA_947561695.1
Location: OX387219.1:4399301-4413839[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00048 0.039 14.9 3.1 1 23 241 263 241 263 0.97

2 11 0.00085 0.068 14.2 11.0 1 23 269 291 269 291 0.97

3 11 0.0022 0.18 12.8 7.4 1 23 297 319 297 319 0.98

4 11 0.0004 0.032 15.2 1.5 1 23 325 347 325 347 0.97

5 11 1.9e-05 0.0016 19.3 0.5 1 23 353 375 353 375 0.97

6 11 4.8e-06 0.00038 21.2 0.2 1 23 381 403 381 403 0.98

7 11 0.0001 0.0084 17.0 0.6 1 23 408 430 408 430 0.96

8 11 4.3 3.5e+02 2.5 2.1 5 19 440 454 437 460 0.87

9 11 1.9e-05 0.0015 19.3 0.8 1 23 547 569 547 569 0.98

10 11 0.00012 0.0095 16.8 1.4 1 23 635 657 635 657 0.96

11 11 3.4e-05 0.0027 18.6 4.3 1 23 667 689 667 689 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00048	0.039	14.9	3.1	1	23	241	263	241	263	0.97
2	11	0.00085	0.068	14.2	11.0	1	23	269	291	269	291	0.97
3	11	0.0022	0.18	12.8	7.4	1	23	297	319	297	319	0.98
4	11	0.0004	0.032	15.2	1.5	1	23	325	347	325	347	0.97
5	11	1.9e-05	0.0016	19.3	0.5	1	23	353	375	353	375	0.97
6	11	4.8e-06	0.00038	21.2	0.2	1	23	381	403	381	403	0.98
7	11	0.0001	0.0084	17.0	0.6	1	23	408	430	408	430	0.96
8	11	4.3	3.5e+02	2.5	2.1	5	19	440	454	437	460	0.87
9	11	1.9e-05	0.0015	19.3	0.8	1	23	547	569	547	569	0.98
10	11	0.00012	0.0095	16.8	1.4	1	23	635	657	635	657	0.96
11	11	3.4e-05	0.0027	18.6	4.3	1	23	667	689	667	689	0.97

Sequence Information

Coding Sequence: ATGTGTATGCCAACGCCTAATAATGTTTCGGGCTTCGGTTACTCATGGGGCTTTACGAGTTCCGCGGACCTTACTAAGGGCGAGGTGGAGACCCCAAGTAGTTTGAGCTATACTCTAGGAAATACGGTGTCCCCAGAGACAACTCTGACTGTTATGTCAACTAACAAACCACAGGTCCAAGAAAAAGTTGGTGCGGTTACAGTAGCTGTCTCAAATTCTGGTGCACAACTAACAAGAGTTGTAACAACCGGTACTCCATTAACGGGCAGACGGGCTATGTTTGTAGTTAATGATGCACCTGCACATACATTAAACAGGGTATCTCAGCAGAATCAGACAGCCACCATACAGACAACAAATTTAGCATCTAAACCGTTTATGACTCCAATTGGCCCTATTCAATTAACTGCAGAAGAATGCAACGAAATTCTAATGAAAAGAGCCCTTCAAGCTCAAGGAATACCAACTCCTGTCATAGACGCTTCGCAACTTAACCACACAATTTTGAATGGGAGCCTGAAGAGTTTGGCCGAGGCCACATCGCAACAAACGCAGGGTGACACAATTCAGACAACTGTGCATCCGCATCATTTGCTGCATACGAAGCAGGAGCCAGGGACAACAAATAATTCGCCTAAAACGGTATATTCGCAGACGGAGCTGCTAAATACCAACACGATGGTGACGTCACAGCCTCCAGCTGCGGTCAAGGAGCGGCCGTATTCGTGCGGAGAGTGTGGCAAGTCGTTTCTGCTTAAACACCATCTAACTACCCATGCGAGGGTGCATACTGGTGAGCGACCGCACTCGTGCATGCACTGCGGGAAGGCTTTCGCACACAAGCACTGCCTCAACACACACATGCGATTGCATTCTACAGACCGACCGTACCACTGCAACGTGTGCAAGAAGGCATTCACCCTCAAACATCACCTTCTAACACATTCAAGGGTGCACAGTCGCGATCGTCCGTTCGTGTGTAACGAGTGCGGGCGCGGGTTCCCGCTCAAGCGACACCTCGTGACGCACAGCAAGTACCACGCCGGGGAGAGGCCCTACGTGTGCGCAGACTGCGGGGAGAGCTTCGCGCAAAAGGAGCACCTGGTGATGCACAGTCGTTTCCATGGCTCGCTGTCTCCGTACGTGTGCAGTGACTGCGGCGTGACGTTTGCGCGCAAGTTCCAGCTCGTCAATCACGGTCGCGTGCATGGCAGGGTCCCGCACGCCTGCCCCGTCTGCGGGAAGGAGTTCCTGCAGAAGAGAACCCTCGTATCACATATGAAAGTCCATACGGGTGAAGGAGCAGTAGCATGTATAGAATGTGGCGAGGCCTTTAAATGTAAATCAGAATTGCAAGAGCACTGTAAAATGACCCGACATTGTTTAAACTCGTCGCAATCTCAGCAGCAGCAACAACAACAACAGCAAGCCCAACAGCAAGCTCAACAACAAGCACAGCAGCAGGCCCAGCAACAAGCTCAGCAACAGGCGCAACAACAAGCACAACAACAGGCACAACAACAACAACAGCAACAACAACAACAAGTGACTGTTATAAAACAAGATGACTTCAAGCCACAAATAGTACAGGTAATAGGCGCTGACGGCCAAATAGTTAGTGAGAAGACAACGCCTGGATATTCTTGTCCTGAATGTGGTTCCTGCTTCAATACTAAAGAGGCGCTGTCGCTGCATGTGCGGCTGCACGCGGGCGACCGCACTTGCGTGACGGATCTGTGCGCGCTCACGGCCGCGCTGCAGCCCGGCCTCGTCGCGGCCGCGCACGCCAACCACAACGCGCTAAATCAACCAATTCAGATAATATCATCAAATCCGAACAATGTTGTTCACACCCAAGTTATAGCTACAAACCACCACGTAACGCCTCCTAGGCCAAAGATACATTTCTGCGGCGAGTGTGGGAAAGGTTTCGCTGCTAAACATGGACTTTTAGCACATCAAAGAAGACATCCCGACGGCAGCTGTACCCTCCGCACTCACGTGTGCGATCAGTGCGGGAAGGCGTTCTTCCAGAAGAACCATCTCATGCTGCACCAGAGACAGCATATGGACTTACCGCCCAGAACTGTACCCCAAGTACAACAATCGCAACAAGCACAACAACAAGCTCAACAGCAAGCACAGCAACAGGCCCAGCAACAAGCAGCCCAACAGGCCGCACAACAAGCGCAACAAGTGCAACAACAGGTGCAACAGCAAGTTCAACAACAGCAACACCAACAACAGCAGCAGCAACATCAGAACAGCCTTGAGATGGAGCAAGATCATCAACAGGCCACACATATACAAGTTGTAACAAACAGATCTGGACAAGTGATAGGCAATCAAATTGTAGTGGGCACCGTAGGCGTGGGCGTGGGCCGCAGGCTCGTCACTCCGCAACTGCACATCGTGGGCAGAGACACCAAGCCGCAGATCACGCACATACCACACACCAAACACCATAATGCAAGACAACATACTACCAGTGGTGACGCAAAAGAGATCGGCGGCCTTGTCCTGTCCGCGGGTCGGAACGGACTCATCAAGTACGAGATCTCACTGCCGCCGCAACCGACCTCAGTGGTACAAGTGCAGCAGTTAGACTGA
Protein Sequence: MCMPTPNNVSGFGYSWGFTSSADLTKGEVETPSSLSYTLGNTVSPETTLTVMSTNKPQVQEKVGAVTVAVSNSGAQLTRVVTTGTPLTGRRAMFVVNDAPAHTLNRVSQQNQTATIQTTNLASKPFMTPIGPIQLTAEECNEILMKRALQAQGIPTPVIDASQLNHTILNGSLKSLAEATSQQTQGDTIQTTVHPHHLLHTKQEPGTTNNSPKTVYSQTELLNTNTMVTSQPPAAVKERPYSCGECGKSFLLKHHLTTHARVHTGERPHSCMHCGKAFAHKHCLNTHMRLHSTDRPYHCNVCKKAFTLKHHLLTHSRVHSRDRPFVCNECGRGFPLKRHLVTHSKYHAGERPYVCADCGESFAQKEHLVMHSRFHGSLSPYVCSDCGVTFARKFQLVNHGRVHGRVPHACPVCGKEFLQKRTLVSHMKVHTGEGAVACIECGEAFKCKSELQEHCKMTRHCLNSSQSQQQQQQQQQAQQQAQQQAQQQAQQQAQQQAQQQAQQQAQQQQQQQQQQVTVIKQDDFKPQIVQVIGADGQIVSEKTTPGYSCPECGSCFNTKEALSLHVRLHAGDRTCVTDLCALTAALQPGLVAAAHANHNALNQPIQIISSNPNNVVHTQVIATNHHVTPPRPKIHFCGECGKGFAAKHGLLAHQRRHPDGSCTLRTHVCDQCGKAFFQKNHLMLHQRQHMDLPPRTVPQVQQSQQAQQQAQQQAQQQAQQQAAQQAAQQAQQVQQQVQQQVQQQQHQQQQQQHQNSLEMEQDHQQATHIQVVTNRSGQVIGNQIVVGTVGVGVGRRLVTPQLHIVGRDTKPQITHIPHTKHHNARQHTTSGDAKEIGGLVLSAGRNGLIKYEISLPPQPTSVVQVQQLD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00932957;
90% Identity: iTF_01166963;
80% Identity: -