Tjac017060.1
Basic Information
- Insect
- Tyria jacobaeae
- Gene Symbol
- -
- Assembly
- GCA_947561695.1
- Location
- OX387237.1:932254-945333[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.43 35 5.6 1.5 1 23 259 282 259 282 0.95 2 19 0.15 12 7.0 0.7 2 20 307 325 306 329 0.90 3 19 0.02 1.6 9.9 4.5 1 23 348 370 348 370 0.97 4 19 0.0013 0.1 13.6 3.1 2 23 375 396 374 396 0.96 5 19 0.00069 0.055 14.4 0.1 1 23 401 424 401 424 0.96 6 19 2.5 2e+02 3.3 1.1 2 23 430 452 429 452 0.93 7 19 0.0042 0.34 12.0 4.7 1 23 458 481 458 481 0.97 8 19 1.6e-05 0.0013 19.6 1.9 2 23 487 508 486 508 0.98 9 19 1.6e-06 0.00013 22.7 1.0 1 23 514 536 514 536 0.98 10 19 0.12 9.7 7.4 1.2 1 23 584 607 584 607 0.95 11 19 0.36 29 5.9 0.1 2 23 634 656 633 656 0.93 12 19 0.21 17 6.6 0.3 2 23 683 704 682 704 0.96 13 19 0.0005 0.041 14.9 1.9 1 23 708 730 708 730 0.97 14 19 0.34 28 5.9 5.7 1 23 735 758 735 758 0.85 15 19 0.0048 0.38 11.8 2.0 1 23 763 786 763 786 0.94 16 19 0.00059 0.048 14.6 5.7 1 23 793 816 793 816 0.97 17 19 4.3e-05 0.0035 18.2 0.1 1 23 824 846 824 846 0.96 18 19 7.8e-05 0.0063 17.4 1.5 1 23 852 874 852 874 0.98 19 19 0.00015 0.012 16.5 0.4 1 23 880 903 880 903 0.94
Sequence Information
- Coding Sequence
- ATGGTGGATCCAAGTTACGCCGAGAGCTGGCTGTCTCAGCCTGATGTCTGCCGGTGCTGTTTATCTGCGAGCGGAACGTGGGATGTTACTGTTTCGTACATTACCGAAGCCGGAGAAAAGGAGGTTTATTCTGCAATGCTACAGGAGTGCTATGGAATCACTCTTTCCAACTTACTACAGTGGGGTCCAAGCAGGATGGTTTGTGCTCTATGCGTGAGCCGCCTGCGGGACGCCATGATTTTTCGCAAGCAAGTAATGTTAGCGGACGAACAGTTTGTCGCATACAACAACACTCGACTTCGTGTATTCAAGCCGGTTATACTACAGGTTGATAATCCATCTGAAAGGAGGGATAGTTCGGACAGCGACGCTAACAGCGATGTTGGAACTATAGATGTCTTAGCACTAACCGATTCAACCGAAGCACCGGTTGTTGACCGGATGACTATAAAAAAGAAACCAGTTCTAAAAGGGAAGAAAAATATTCCCAGGACAGACGTTGAAGACGATCTCGACACTGACACTCCTATATCAGAGGTATCGAGGAAGAATCATGTGCCAGATAGCATCGATGAGAGGACGGTGATCACCACTGATGATCCTCTTGATCAATATAGTGTTGATGGCACTGAAGTCGCTCCTAAAAAAAGCTTCATCTTAACGAGACCACAGAACGTGGAAAAGGAGGTATCGGAGCGAAAACGTATCATTCTTACGTGTGACGCCGTCCTTAGATACAGCAACGCTTGCCCCTTCAGACACCACAAGAGCTGGTTTCAATGCTTCTTCTGTCAGCAAGAGTTCATGGAAACAAACCTCCTCAGGGACCACACTGTAACAACTCACTCAAATATTGACGATGAATTAAAAAAAATTAAACGTTACCCGCGCTCGTTGCAAATTGAAATTTCAAATCTCGAATGCCGCCATTGCAATTTAACGTTGACAGATGTAAGTTCGATGCGCCGCCATTTTGTCGATGTACACAAGAAGGTTATATACAATGAATGTATTGCGGATTACAAAGTAAACGGATCTCCATATTCTTGTCACTTGTGTGGACAACAATTTCATGTATTTAGAAGTTTAACTACACATTTAAATGAACATTACGCTAACTGTATATGCGATGTTTGCGGTAAATCATTTTTAAATTCGAAACGTTTAAAAGTGCACAAACGCACACACGAAAACGGTCAATACCCATGTACAGAATGCGGAAAAGTGCTTAAAACTAGTACGTCGAAAGCTAATCATATAGAAAGTGTTCATTCTAAACGAATTATCAAATGCCAAATATGTTTGAAACCTATGAAACATTATAATGATAGGATTAAACATATGTCTGAAGTACATAATATTACTCACAAATTTAAGTGCCATATTTGTAGTCGCGAGTACAATATAAAGCATTATCTGGCAACACACATACGTCAAACTCACGGTAATAAAAACAAGAAGTGTTTAGAATGCGGTATGGCGTTCATAACCAATCATGGGTTAAAGAAACACATGATGAAACATACTGGGGTTAAACCTTACTCGTGCAACGTTTGTTCTAAGTCTTATGCAAGGAGTTACACGTTAAGGGAACATATGAGGGCTCATGAGAAACGAAAAATCGTCCCATACGATGAAAAGAAAATAGTCGATGAGAGACACATCAAGAACAAAAACCTTCGAGCCAACATCACTCTAGTACTGAAATACACGACAGTGTTGCCATTTAAACAGATCAATAACAACCAATTCTTCTGTCTTTATTGCGATAAGCCATATCTACTGTTCAAAGATTTAAAAAATCACATCAAAGTTCGCCATTGGAATATTACAGAACCAGAAATTAAGCGAACAATCAAGTCCCCCAAAGATTTGGTGAAAGCTGACGTTAGCGATATCTCTTGTAGATTATGCGGAAGTAATTATAATACAATCGAGAAATTAATCGAACATCTGAAAGGACTTCACAGCAAAACATTCCACGCGATCCCTGACCTGAAACACCCCCATGGCATTCTAGGTTTCGATTTAAGCGAAGGAAAATTAAGGTGTGCCGTCTGTGCTGCAGAATTTAAGTTCTTCAAAAAGTTATCAATTCACATGAACGAACATGACGCAGATTATATTTGCCACATTTGTGGGAAAAGATTCGTGGCCGAACACAGACTGGCAACACATATCACTAGACACAGGAATTTGGAGTTCAAATGCAACTTTTGCAGCAAAAAATTCAGTTCCGCTTCGTCTAGAGATTGCCATACTCGTAAAGTGCACAAACCACTCAAATTCAAATGTCCCGAATGCTCGCAAGAATTTTCGCAGTATTTGCACAGACTGAGGCACATGGCCGAACGTCACAAGTTCAAAAAACCGGATTTCCGATGTCAGCATTGTTCTAAACAGTTTGCACATCATTCGGCGCTGGCCGTGCACATTAAAAACCGCCATTACAAACATGAAGTTCAAAAGTTTATATGTGAAATATGCGACAAGACTTTCAGTAGCAAATGGCTTGCAGAAAGGCATTTGGTGGTACACAGTGGAAATAAACAATTCGAATGTGAGTACTGTAGTAAGAAATTTGCTAAGAAATACACTTTAGACGTTCATGTGAAGAGTCATTTGGATGAGAGACAGCATTCGTGTCCTCTGTGTAAGCGTGCGTTTGTGCAGAAGGTGGGTTTGATAAAACATGTTAAGGCGCTCCATCCTAATTCTGGTATTGACATTAAAACGTTGTAA
- Protein Sequence
- MVDPSYAESWLSQPDVCRCCLSASGTWDVTVSYITEAGEKEVYSAMLQECYGITLSNLLQWGPSRMVCALCVSRLRDAMIFRKQVMLADEQFVAYNNTRLRVFKPVILQVDNPSERRDSSDSDANSDVGTIDVLALTDSTEAPVVDRMTIKKKPVLKGKKNIPRTDVEDDLDTDTPISEVSRKNHVPDSIDERTVITTDDPLDQYSVDGTEVAPKKSFILTRPQNVEKEVSERKRIILTCDAVLRYSNACPFRHHKSWFQCFFCQQEFMETNLLRDHTVTTHSNIDDELKKIKRYPRSLQIEISNLECRHCNLTLTDVSSMRRHFVDVHKKVIYNECIADYKVNGSPYSCHLCGQQFHVFRSLTTHLNEHYANCICDVCGKSFLNSKRLKVHKRTHENGQYPCTECGKVLKTSTSKANHIESVHSKRIIKCQICLKPMKHYNDRIKHMSEVHNITHKFKCHICSREYNIKHYLATHIRQTHGNKNKKCLECGMAFITNHGLKKHMMKHTGVKPYSCNVCSKSYARSYTLREHMRAHEKRKIVPYDEKKIVDERHIKNKNLRANITLVLKYTTVLPFKQINNNQFFCLYCDKPYLLFKDLKNHIKVRHWNITEPEIKRTIKSPKDLVKADVSDISCRLCGSNYNTIEKLIEHLKGLHSKTFHAIPDLKHPHGILGFDLSEGKLRCAVCAAEFKFFKKLSIHMNEHDADYICHICGKRFVAEHRLATHITRHRNLEFKCNFCSKKFSSASSRDCHTRKVHKPLKFKCPECSQEFSQYLHRLRHMAERHKFKKPDFRCQHCSKQFAHHSALAVHIKNRHYKHEVQKFICEICDKTFSSKWLAERHLVVHSGNKQFECEYCSKKFAKKYTLDVHVKSHLDERQHSCPLCKRAFVQKVGLIKHVKALHPNSGIDIKTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -