Basic Information

Insect: Tyria jacobaeae
Gene Symbol: -
Assembly: GCA_947561695.1
Location: OX387214.1:11977057-11984097[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 4.6e-07 3.7e-05 24.4 0.6 2 23 467 488 466 488 0.97

2 8 2.5e-06 0.0002 22.1 2.2 1 23 494 516 494 516 0.98

3 8 7e-06 0.00056 20.7 0.6 2 23 525 546 525 546 0.98

4 8 7.7e-06 0.00062 20.6 0.7 1 23 552 574 552 574 0.99

5 8 2.1e-07 1.7e-05 25.5 2.6 1 23 580 602 580 602 0.98

6 8 4.9e-07 4e-05 24.3 1.3 1 23 608 630 608 630 0.97

7 8 8.3e-05 0.0067 17.3 7.3 1 23 636 658 636 658 0.97

8 8 6.1e-05 0.0049 17.8 0.9 1 22 664 685 664 685 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	4.6e-07	3.7e-05	24.4	0.6	2	23	467	488	466	488	0.97
2	8	2.5e-06	0.0002	22.1	2.2	1	23	494	516	494	516	0.98
3	8	7e-06	0.00056	20.7	0.6	2	23	525	546	525	546	0.98
4	8	7.7e-06	0.00062	20.6	0.7	1	23	552	574	552	574	0.99
5	8	2.1e-07	1.7e-05	25.5	2.6	1	23	580	602	580	602	0.98
6	8	4.9e-07	4e-05	24.3	1.3	1	23	608	630	608	630	0.97
7	8	8.3e-05	0.0067	17.3	7.3	1	23	636	658	636	658	0.97
8	8	6.1e-05	0.0049	17.8	0.9	1	22	664	685	664	685	0.95

Sequence Information

Coding Sequence: ATGTGTGAATGGTTGTCGTACGGGGAATGGTGCGATGTGAAACTACTGTGTGGCGGCCGCGCATTCAGCGCGCATCGCGCCGTGCTCGCTAGTGTTAGCAGTTTTCTTAGACGCATACTACTTTCCTGTCCTAACGACGACACGGCGACCTTTATAATCTTACCCGATTTTGATCTCGATGCTATGGCGTCAGTCCTTTACTACATTTATAACGGCGAAGTTATAGTTAAAAAACATAAATTGCAAATGTTTTTAGACATAATAAAAGCAATGGAAATATTTGTTGATAGCAAATATTTACATCAATTTATTGTCAACGATTACTTAAACTCAAGTCTTATTTGTAGAAATGAAGCTGATTTGTGTAAAAAAAAAGTATTTACTTTAGGCGTGGAGGACTCCGAAGATCAAAGATATGTTAATTTAAAGAGAGGCATTGAGAACCAGGATCCACCATTGCAAGATTCAGAAAGTTTATTTGATTGTACCGATAAGCTAATATGTAGTCAGAACCAAAGTGAAGAGCGTAGGACTTCTTTACGGAATCTGAAATCACCAAGTGGAGACCGACAAAGGAACTCTTTCCTACGTGATTTATTTATCGAGACATATCCTCAAAACGGTAATGTTAACGGTCTCACGCCAGGCGTGCTAGCAATATCAAATGAATACTATCGTGCTCCGGCATCTGTGCTCTTAACGAATGCAAATGGCAAACATCTCAACGACACACTCTTAGAACCATATAAAAAAACGAGTGAGCACATCAGTCATTCTCCTTCATTATTCCACATTCGCAATAAGCAGCGATGCACTCGGGGTGAAAAAGATTACGGCGAATCTTCAAAAAGTTTCTATGACTCTTTCGGAAATGTTTGTTCGTTTAGAAAACTTAATAACCGGTACTGGTTTGACTCAGAAAGCAGAAGTTATAGAAGAAATGATTGGATGAATCATGTTTCCATACCTGAGAATAGTACTTTTCAGATAGGTGTTCAAGATCAAATAGTATCTAGGTTGTATGTTCCTTCATTAGATTACAGCGTTACCCCATTGATGTTCGATTCAGCAAAATCGATAAGAAATAAGACATCTACATCGAATTCAATTCCATCTAGTAATCGTGAGGAAGTATCCATTTCAATGCCCAAGGTCACTATTCTGAATCACGTACTTGATAGCCCGTGGACTCCACGTATACCTATAAACTACAAACCGTTTCGGAGGAAAGTTAAAGAAAGTTTACGGTCTCAAAAGACTGGTCAGAAGGCAATTGAAGCCATTGTACATAATGACAGTAATAATAATGTTGCGCGATCGCCACTATCGCTGAGTATTGCACAATCGGAAAAGATAAAAGCTCCAATTTTGATAACTGTCAATCGAAATGATGACTTGAAGTGCTCCATTTGTAATCAGGTATTCACCAATAGTGATTTGTTATCTGTTCATATGCGACGTCACGCCACGAATGCGCGATATACTTGCGGAGAGTGCAACAAGACGTTCTCACAGTTGAGAAACTTCAAGTACCACATGTCGATACACCGCGGTACCAGGGAGTTTGCTGCTACCTGTACAGTATGTGGCAAATACTTTAACGACAGGGGCTATCTAAGCAGTCACATGAAGATTCATAGGAATCGAAAGGAATACAAGTGCACACTCTGTCCGAAATCTTTTAATCAACGTGTTGCTTATAATATGCATGTGAGAATCCATACAGGAGTAAAGCCTCACGTGTGTGAGCAATGCGGCAAAGCCTTTTCTCGCAAGATGTTGTTGAAACAGCACCAGCGCACGCACTCCGGTGAGCGGCCCTATGCGTGCCCACACTGCGACAAACGCTTCGCTGACCGCTCTAACATGACTCTACATCTAAGACTACATACCGGAGTAAAGCCGTTTTCATGCACTTTATGTCCAAAGTCGTTCACAAAAAAGCATCATTTGAAGTCACACCTGAACTTTCACACGGGTTCAAAGCCTTACTCGTGCCCACGGTGCAAACTTGCTTTTACACAATCGTCAAATATGAGGACTCATCTCAAAAAGTGCCGAGCCCCTGAACCGACACCGGATACCGAAAATACATATACAACAATGTAA
Protein Sequence: MCEWLSYGEWCDVKLLCGGRAFSAHRAVLASVSSFLRRILLSCPNDDTATFIILPDFDLDAMASVLYYIYNGEVIVKKHKLQMFLDIIKAMEIFVDSKYLHQFIVNDYLNSSLICRNEADLCKKKVFTLGVEDSEDQRYVNLKRGIENQDPPLQDSESLFDCTDKLICSQNQSEERRTSLRNLKSPSGDRQRNSFLRDLFIETYPQNGNVNGLTPGVLAISNEYYRAPASVLLTNANGKHLNDTLLEPYKKTSEHISHSPSLFHIRNKQRCTRGEKDYGESSKSFYDSFGNVCSFRKLNNRYWFDSESRSYRRNDWMNHVSIPENSTFQIGVQDQIVSRLYVPSLDYSVTPLMFDSAKSIRNKTSTSNSIPSSNREEVSISMPKVTILNHVLDSPWTPRIPINYKPFRRKVKESLRSQKTGQKAIEAIVHNDSNNNVARSPLSLSIAQSEKIKAPILITVNRNDDLKCSICNQVFTNSDLLSVHMRRHATNARYTCGECNKTFSQLRNFKYHMSIHRGTREFAATCTVCGKYFNDRGYLSSHMKIHRNRKEYKCTLCPKSFNQRVAYNMHVRIHTGVKPHVCEQCGKAFSRKMLLKQHQRTHSGERPYACPHCDKRFADRSNMTLHLRLHTGVKPFSCTLCPKSFTKKHHLKSHLNFHTGSKPYSCPRCKLAFTQSSNMRTHLKKCRAPEPTPDTENTYTTM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00707205;
90% Identity: iTF_01502253;
80% Identity: iTF_01502253;