Basic Information

Insect: Tyria jacobaeae
Gene Symbol: -
Assembly: GCA_947561695.1
Location: OX387215.1:18132604-18139158[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 6.2e-05 0.005 17.7 3.5 2 23 159 180 158 180 0.97

2 12 0.028 2.3 9.4 2.8 1 23 184 206 184 206 0.97

3 12 0.00031 0.025 15.5 1.2 2 23 228 249 227 249 0.96

4 12 6.8e-05 0.0054 17.6 3.8 2 23 257 278 256 278 0.97

5 12 1.2e-07 9.7e-06 26.3 0.9 1 23 284 306 284 306 0.99

6 12 4.5e-05 0.0036 18.2 2.2 1 23 312 334 312 334 0.96

7 12 9.3e-07 7.5e-05 23.5 1.3 1 23 340 362 340 362 0.96

8 12 0.00063 0.05 14.6 0.2 1 23 368 390 368 390 0.97

9 12 0.00014 0.011 16.6 0.8 1 23 396 418 396 418 0.97

10 12 5.6e-05 0.0045 17.9 3.9 1 23 424 446 424 446 0.98

11 12 7.4e-07 5.9e-05 23.8 0.5 1 23 452 474 452 474 0.98

12 12 2.3e-05 0.0018 19.1 1.1 1 23 480 502 480 502 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	6.2e-05	0.005	17.7	3.5	2	23	159	180	158	180	0.97
2	12	0.028	2.3	9.4	2.8	1	23	184	206	184	206	0.97
3	12	0.00031	0.025	15.5	1.2	2	23	228	249	227	249	0.96
4	12	6.8e-05	0.0054	17.6	3.8	2	23	257	278	256	278	0.97
5	12	1.2e-07	9.7e-06	26.3	0.9	1	23	284	306	284	306	0.99
6	12	4.5e-05	0.0036	18.2	2.2	1	23	312	334	312	334	0.96
7	12	9.3e-07	7.5e-05	23.5	1.3	1	23	340	362	340	362	0.96
8	12	0.00063	0.05	14.6	0.2	1	23	368	390	368	390	0.97
9	12	0.00014	0.011	16.6	0.8	1	23	396	418	396	418	0.97
10	12	5.6e-05	0.0045	17.9	3.9	1	23	424	446	424	446	0.98
11	12	7.4e-07	5.9e-05	23.8	0.5	1	23	452	474	452	474	0.98
12	12	2.3e-05	0.0018	19.1	1.1	1	23	480	502	480	502	0.97

Sequence Information

Coding Sequence: ATGGATATCACTATTACTTCTAAAAATTACGAGAATAGTTGTCGCACATGTTTAAATGATGGAGTTGGCGAAATGCACGATATTTTTGAGCATGGTAAAGATATGGGCAGTGTTGCTCAAATGTTATCTTCTTACACTTCATTAAAGGTGACTGTGTATGACCAATTACCAAAGAAAGTATGCAGTAGCTGTTACTATTGTTTATTAAATTTTCATAATTTTACTATTAACGCTTTAAAAGCTGATATGAAGCTAAAGGAGTTTATCACAAATTTCACAACAGTAAAGGAAGAATCAAATAATTGTGAAGAAGTTGACACCACAAACTTTAAACAGCCAGAGATGTCAATAAATGCTGACTTTGATATAGATGATAATGCAGACTATAATTTTTCCATAGACAATAACATTGAAAATGATATATCTAACATACTAACAAATAGAGATGAATCACATTCCAAATCCAAAAAATTAAAATGTGAGGTGTGCAATAAAAAGTTTAAAAAAATACCAAATTACAAACATCACATGAATATGCATACTAAAGAGTACAACTGTACCCTATGCAAACAGATATTTGGAGACAATCATAGTTTTGTACAGCATTTCATCAAACATCGAGAAGATCCCAAAGAAAAGTTTTTAACCCCTGACACAAACACAAATAACAACCAAAGTTTAGTTTGTAACATATGCTCTTTTTCTTTCAAGTCTATACATTCACTGTCAGCTCATCAAAAGGCACACACACCCAAAAACAGAGTACTACAATGTACTCTTTGTAAAAAAATATTTAAAAAGATAAGCCATTTAAAACGGCATGAACTGACACATAATGATAATCGTCTTTTCAAATGTGACATGTGTCCAAAATCATTTGCAACGGAAGATAATTTAAAAACTCATTTAAATAAGCATAAAGGCATCAAGAATCATCACTGTCCAATATGTACAAAGATGTTTGCTAGTCTGGAATCTTTAACAAATCATGTAAAACTTCATACAAGAGAAAAGCCTTATTTATGTTCAACCTGTGGCAAAATGTTTGATTCTAGTACAAATTTAAACCAACATATTAAAAGGCATGCTGGATTAAGATTATTTGCTTGTAATTTGTGTCCAGGGAAATTTATTAGTAAGGGTGAACTGAAATCCCATAGTATGACTCACAGTGGTGAACGTCCATTTGCTTGCGACCTGTGCACGGCATCTTTTATAAAACGCAGCTACTTAGAGAAGCACAAATTAACACACTTGGGCGTTAAACCACATCAGTGCGATGTCTGTGCCATGAAGTTCGCAGACAAAAATCACTTAAAGCGTCACTACAGAATCCATACAGGTGAAAAACCTTACCGTTGTGACATCTGTGACCGAGCTTTCACACAGAGCAATGATTTGGTGAAGCACAAAAGAGCACATTTGGGAACTAATTTATATAAGTGCGATGAATGCAGCCAAAGTTTCAGACTGAAAACGGAACTACGTCAGCATATATCTGAACATTTTATATCAGCACAGCTACAGGCTAAAATCGATACCAATGAACAGTGTCGATCGATGGAGGGTAGTTGCAATATAGATGTTCACCCCGTTCAACCACTAATTTGTGAATTATGA
Protein Sequence: MDITITSKNYENSCRTCLNDGVGEMHDIFEHGKDMGSVAQMLSSYTSLKVTVYDQLPKKVCSSCYYCLLNFHNFTINALKADMKLKEFITNFTTVKEESNNCEEVDTTNFKQPEMSINADFDIDDNADYNFSIDNNIENDISNILTNRDESHSKSKKLKCEVCNKKFKKIPNYKHHMNMHTKEYNCTLCKQIFGDNHSFVQHFIKHREDPKEKFLTPDTNTNNNQSLVCNICSFSFKSIHSLSAHQKAHTPKNRVLQCTLCKKIFKKISHLKRHELTHNDNRLFKCDMCPKSFATEDNLKTHLNKHKGIKNHHCPICTKMFASLESLTNHVKLHTREKPYLCSTCGKMFDSSTNLNQHIKRHAGLRLFACNLCPGKFISKGELKSHSMTHSGERPFACDLCTASFIKRSYLEKHKLTHLGVKPHQCDVCAMKFADKNHLKRHYRIHTGEKPYRCDICDRAFTQSNDLVKHKRAHLGTNLYKCDECSQSFRLKTELRQHISEHFISAQLQAKIDTNEQCRSMEGSCNIDVHPVQPLICEL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00707192;
90% Identity: -
80% Identity: -