Tjac007453.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tyria jacobaeae
Gene Symbol
-
Assembly
GCA_947561695.1
Location
OX387212.1:15915861-15932518[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 7.6e-05 0.0061 17.4 2.2 1 23 425 447 425 447 0.97
2 20 0.004 0.32 12.0 0.6 1 20 453 472 453 475 0.94
3 20 2.1e-05 0.0017 19.2 5.4 1 23 494 516 494 516 0.98
4 20 9.3e-05 0.0074 17.2 4.1 1 23 522 544 522 544 0.99
5 20 3.5e-05 0.0028 18.5 5.3 1 23 550 572 550 572 0.97
6 20 9e-06 0.00072 20.4 7.9 1 23 578 600 578 600 0.97
7 20 7.1e-07 5.7e-05 23.8 2.9 1 23 606 628 606 628 0.97
8 20 9.7e-05 0.0078 17.1 6.7 1 23 634 656 634 656 0.97
9 20 0.00013 0.011 16.7 6.7 1 23 662 684 662 684 0.97
10 20 4.6e-07 3.7e-05 24.4 1.9 1 23 690 712 690 712 0.98
11 20 4.7e-05 0.0038 18.1 7.9 1 23 718 740 718 740 0.98
12 20 3.9e-05 0.0031 18.4 6.8 1 23 746 768 746 768 0.98
13 20 9.7e-06 0.00078 20.3 4.4 1 23 774 796 774 796 0.98
14 20 7e-06 0.00057 20.7 6.0 1 23 802 824 802 824 0.97
15 20 1.5e-06 0.00012 22.8 4.1 1 23 830 852 830 852 0.98
16 20 2.9e-06 0.00023 21.9 6.0 1 23 858 880 858 880 0.98
17 20 8.4e-05 0.0068 17.3 7.5 1 23 886 908 886 908 0.97
18 20 1.5e-05 0.0012 19.7 6.3 1 23 914 936 914 936 0.96
19 20 0.0011 0.09 13.8 0.9 1 23 943 965 943 965 0.96
20 20 0.016 1.3 10.1 5.3 1 23 975 997 975 997 0.99

Sequence Information

Coding Sequence
ATGAATCCGGATCACCATAGTATGGCCCCGGGTGGTGGCCAACCTCCGGGAAGTTCTGAGTCCCAGAATCAAAGGGTGCAATCTGGTCAACAACAGCAGCAAAATAACTTGCCTGCCACGACATCTGCTACTGATCTGCGAGTGAACTCTGTGAACTCGGCTGTGAACGTCGCTTTGTCCAGTGTCGCAAAATATTGGGTGTTTACTAATTTATTTCCTGGACCCATACCACAAGTGTCAGTGTACGGATTACCTGCTGGTGCTAGAATTGAAAATGGAAAACCTGTACAGGATCTTGGTCAAGCTCATGCAAGCATACTGAATGGAGATCCAAATATTATACTTGGTCATCATGCTGGTCAGTCCCAAGTTACAGTTTCAGCTGCAGGGGGTCAGCAGATACCTGTGTCACAGATCATTGCAACCCAGTCGGGACAAACACATGAATCTCTTGTGGCTCACAGTCAACAAGCAGAATTGGTAGCAGCTCAGGCTTCTGGCAACAATGCACAAGTGTCAGTTAGCACGGGCCAGCCTACTCATCAGCAGGTACCCACTAATCGGGTCGAGTTTGTACAACACCATAACATTGATATGGGACATCATTCACAACAACACTTAATGCAGCAACAACTCATGTCGACAGCAAGACCAGAGCATAGCAATCAACAGATACAACTGACTGTAAGCGAAGATGGTATCGTAACCGTGGTGGAACCGGCTGGCAGTAAGCTGGTCGACAAGGAAGAACTCCATGAGGCTATCAAGATGCCTACCGACCATGGGCTCACTGTTCATCAGCTGCAGCAAATAGTTGGTCAACAGGTGATAGACAGCGTAGTTCGCATAGAGCAAGCTACTGGTGAGCCAGCTAACATACTAGTGACACACAACCCTGACGGTACCACGTCAATAGAAGCTAGTGCTGTGGACCCTCTCATAGTCAAAGATGAAAAGAACTCTTCAAAAATGGAGACAGGACAGTTTGCTATACCCACTGACATTAAGGATATCAAAGGCATAGATTTAAAGAATGTGGGGAGTATGGGAATGGAAGGTGCAGTTGTCAAGATCTCAGCCGGTGCATCTGATCAAGATCTCCATGCTATGTACAAAGTTAATGTAGAAGATCTCTCACAGTTACTTGCTTACCATGAAGTATTTGGGAAATTAAATTCGGATGGACAACAGCAGGCTAAGGTTATAACCGAAGTAGAAGTAGAGGCAGGTACGAGCGCAGCGATGTCAGAAGCAGAGTCATCGCCCGGTCATCATTCATGTGATATTTGTGGCAAAATATTCCAATTTAGATACCAACTCATCGTTCATAGGCGTTATCATGGCGAAAGCAAACCGTTCACTTGTCAAGTTTGTGGTTCGGCTTTTGCTAATCCTGTCGAGTTATCGAGACATGGAAAGTGCCATCTTGCGGGTGACCCTAATGAGAGACATGCTAAAAGAATGGCGCAAGATAAGCCATATGCCTGTTCTACTTGCCACAAAACTTTCTCAAGGAAAGAACACTTAGATAATCACGTTCGCAGTCACACTGGGGAGACGCCTTACAGATGCGAGTTCTGCGCTAAGACTTTTACCCGTAAAGAACACATGGTGAACCACGTGCGTAAACATACGGGAGAAACGCCTCATCGTTGCGACATCTGCAAGAAGAGCTTTACAAGAAAAGAACACTTTATGAACCATGTCATGTGGCATACAGGTGAAACGCCGCACCATTGTCAAATATGCGGCAAGAAGTATACTAGGAAGGAGCATTTAATGAACCATATGAGGTCTCACACAAATGATACTCCCTTCCGATGCGATCTGTGCGGCAAATCGTTCACAAGAAAGGAACATTTCACCAATCATATATTGTGGCATACGGGCGAAACGCCACATCGCTGCGACTTCTGCTCGAAGACATTTACACGTAAAGAACACTTATTAAACCATGTTCGTCAGCACACTGGCGAGTCTCCGCACAGATGTACTTTCTGCAGCAAATCTTTCACTCGACGTGAACATCTCGTTAATCATGTTCGGCAGCACACGGGAGAAACTCCCTTCCAGTGTGGATACTGCCCTAAAGCATTCACGAGAAAGGATCATCTTGTGAACCACGTTCGGCAGCATACAGGGGAATCTCCACACAAGTGTTCGTTCTGTACGAAGTCGTTCACGCGTAAAGAACATCTAACGAACCACGTGCGACAACACACCGGCGAGTCCCCACATCGATGTACATTCTGCGCTAAGTCCTTCACCAGAAAGGAACATCTTACTAACCATATCAGACAGCACACGGGTGAAACGCCACACAAGTGCACGTTCTGTCCGCGCGCGTTCGCTCGCAAGGAGCACCTCAACAATCACATCCGCCAGCACACCGGCGTCACGCCGCACTCCTGCTCCTACTGCAGCAAGAGCTTCACACGGAAGGAACACCTCGTCAACCACATACGGCAACATACGGGCGAGACACCTTTTAAATGCACATACTGTGCTAAATCGTTTTCTCGAAAGGAACATTTGACGAATCACATAAATCTTCATACTGGGGAGACGCCGCACAAGTGTCCGTTCTGCACTAAAACATTCTCAAGAAAGGAACATTTAACAAACCATGTCAGAATTCATACGGGCGAGTCGCCTCACCGCTGTGGGTTCTGCCAGAAAACATTTACACGAAAGGAACATCTAACTAACCACTTAAAACAGCATACTGGCGACACTGCGCATGCATGTAAAGTATGTTCCAAACATTTCACCAGGAAGGAACATCTTGTTGCACACATGCGATCGCATAGTTGCGGTGAACGTCCGCACACTTGTGGAGAGTGTGGCAAATCGTTCCCACTGAAAGGGAATCTTTTATTCCACGAGCGTTCTCATAACAAGGCCAATAATGCCAACAGACCATACCGATGTGAAGTTTGTTCCAAGGAATTCATGTGTAAAGGACACTTGGTGACGCATAGACGCACGCACACGGAGGCGGTCGAGGGCGCGCCGGCCGCTACTGACGCGCCTGCCGAGCCCGACGACTGCTCCGACTGTAATAAGTGTATCAAAGTCGAACCCGAGCGAACTGACACAAAGCACGAAATAAGGACTTCTGTGGATACTAGGCCAGATGAAAATAACATGGCACAGACTCAACAAAATACTTCCACTGCTGTAATGCAGATAACAAATCAGCAAGTGCGAGTGGGCACGTCGAGCGCGGGGGTGGTGGCGGGCAGCGCTGCGGGTGTGACGGCGGCCACCTACACACACCACCACCCCGTCACCGTCAACTACTAG
Protein Sequence
MNPDHHSMAPGGGQPPGSSESQNQRVQSGQQQQQNNLPATTSATDLRVNSVNSAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPAGARIENGKPVQDLGQAHASILNGDPNIILGHHAGQSQVTVSAAGGQQIPVSQIIATQSGQTHESLVAHSQQAELVAAQASGNNAQVSVSTGQPTHQQVPTNRVEFVQHHNIDMGHHSQQHLMQQQLMSTARPEHSNQQIQLTVSEDGIVTVVEPAGSKLVDKEELHEAIKMPTDHGLTVHQLQQIVGQQVIDSVVRIEQATGEPANILVTHNPDGTTSIEASAVDPLIVKDEKNSSKMETGQFAIPTDIKDIKGIDLKNVGSMGMEGAVVKISAGASDQDLHAMYKVNVEDLSQLLAYHEVFGKLNSDGQQQAKVITEVEVEAGTSAAMSEAESSPGHHSCDICGKIFQFRYQLIVHRRYHGESKPFTCQVCGSAFANPVELSRHGKCHLAGDPNERHAKRMAQDKPYACSTCHKTFSRKEHLDNHVRSHTGETPYRCEFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLMNHMRSHTNDTPFRCDLCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCTFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCTFCAKSFTRKEHLTNHIRQHTGETPHKCTFCPRAFARKEHLNNHIRQHTGVTPHSCSYCSKSFTRKEHLVNHIRQHTGETPFKCTYCAKSFSRKEHLTNHINLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCGFCQKTFTRKEHLTNHLKQHTGDTAHACKVCSKHFTRKEHLVAHMRSHSCGERPHTCGECGKSFPLKGNLLFHERSHNKANNANRPYRCEVCSKEFMCKGHLVTHRRTHTEAVEGAPAATDAPAEPDDCSDCNKCIKVEPERTDTKHEIRTSVDTRPDENNMAQTQQNTSTAVMQITNQQVRVGTSSAGVVAGSAAGVTAATYTHHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00707182;
90% Identity
iTF_01166931;
80% Identity
-