Tjac022332.1
Basic Information
- Insect
- Tyria jacobaeae
- Gene Symbol
- -
- Assembly
- GCA_947561695.1
- Location
- OX387213.1:22679785-22680129[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2e-07 0.00017 21.7 0.0 17 38 18 40 10 47 0.84 2 2 3.4 2.9e+03 -1.4 0.0 25 38 78 92 77 96 0.65
Sequence Information
- Coding Sequence
- ATGCCAAAAAGAAAACTGTGGGATGCTGGAGCACTGACAAAAGCTGTTGAAATGGGTTATAAAAAGGCAGCAAAATTATTTGATGTTCCAAGAGCTACTTTGAAAGATTACGTCAAAAATTCTGAAAGATCTGTAGAAACGTTGGTGTCTGGTAAAATGGGAAGAAAACCAGTTCTGCCGATAGAATTGGAGGATGAGCTGGTAGAGTATTGCTTGCAAATGGAGAAAAAATATTATGGTGTCACCGCTTCTGATTTAAAACACATGGCGTTTCAATTGGCGATCAGAAACAATATTCCACATCCATTTTCACTGACCAAGAAGAAAGCGGGAAAAAATGGATGA
- Protein Sequence
- MPKRKLWDAGALTKAVEMGYKKAAKLFDVPRATLKDYVKNSERSVETLVSGKMGRKPVLPIELEDELVEYCLQMEKKYYGVTASDLKHMAFQLAIRNNIPHPFSLTKKKAGKNG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01367670;
- 90% Identity
- -
- 80% Identity
- -