Basic Information

Insect: Tuta absoluta
Gene Symbol: -
Assembly: GCA_029230345.1
Location: CM055308.1:8323950-8331102[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 28 0.07 6.8 8.4 2.9 2 23 68 89 67 89 0.98

2 28 0.031 3 9.5 1.1 1 23 95 118 95 118 0.98

3 28 0.00073 0.072 14.6 3.1 2 23 132 153 131 153 0.97

4 28 0.0047 0.46 12.1 4.1 1 23 159 181 159 181 0.99

5 28 0.1 9.9 7.9 3.3 1 23 186 209 186 209 0.97

6 28 6.3 6.2e+02 2.3 0.8 1 21 218 238 218 239 0.92

7 28 0.9 87 4.9 4.6 2 23 247 268 246 268 0.96

8 28 0.058 5.7 8.7 2.9 1 23 306 329 306 329 0.98

9 28 0.0025 0.24 13.0 0.7 1 20 337 356 337 358 0.94

10 28 7.2 7e+02 2.1 0.6 1 22 415 436 415 438 0.80

11 28 1.3 1.3e+02 4.4 0.1 1 21 439 459 439 460 0.91

12 28 0.19 19 7.0 5.3 1 23 604 626 604 627 0.96

13 28 1.5 1.5e+02 4.2 0.2 1 20 635 654 635 656 0.90

14 28 0.0091 0.89 11.2 5.3 2 23 689 711 688 711 0.96

15 28 2.5 2.4e+02 3.5 0.4 2 23 717 738 716 738 0.94

16 28 0.0055 0.54 11.9 0.4 1 23 744 767 744 767 0.97

17 28 0.69 67 5.3 0.6 1 23 956 979 956 979 0.95

18 28 0.002 0.2 13.3 0.3 3 21 982 1000 982 1001 0.96

19 28 0.009 0.88 11.2 1.4 1 23 1130 1153 1130 1153 0.98

20 28 3.5 3.4e+02 3.1 0.3 1 20 1161 1180 1161 1182 0.92

21 28 0.66 64 5.3 1.5 2 23 1190 1211 1189 1211 0.97

22 28 0.00087 0.085 14.4 0.5 3 23 1216 1237 1214 1237 0.92

23 28 0.00026 0.025 16.1 1.9 1 23 1270 1293 1270 1293 0.98

24 28 0.79 77 5.1 1.1 3 23 1322 1343 1320 1343 0.95

25 28 0.00088 0.086 14.4 0.8 1 23 1347 1369 1347 1369 0.98

26 28 5.7 5.6e+02 2.4 2.6 2 23 1438 1459 1437 1459 0.96

27 28 9.4 9.2e+02 1.7 0.7 2 23 1484 1505 1483 1505 0.95

28 28 0.0013 0.13 13.8 1.1 1 23 1511 1534 1511 1534 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	28	0.07	6.8	8.4	2.9	2	23	68	89	67	89	0.98
2	28	0.031	3	9.5	1.1	1	23	95	118	95	118	0.98
3	28	0.00073	0.072	14.6	3.1	2	23	132	153	131	153	0.97
4	28	0.0047	0.46	12.1	4.1	1	23	159	181	159	181	0.99
5	28	0.1	9.9	7.9	3.3	1	23	186	209	186	209	0.97
6	28	6.3	6.2e+02	2.3	0.8	1	21	218	238	218	239	0.92
7	28	0.9	87	4.9	4.6	2	23	247	268	246	268	0.96
8	28	0.058	5.7	8.7	2.9	1	23	306	329	306	329	0.98
9	28	0.0025	0.24	13.0	0.7	1	20	337	356	337	358	0.94
10	28	7.2	7e+02	2.1	0.6	1	22	415	436	415	438	0.80
11	28	1.3	1.3e+02	4.4	0.1	1	21	439	459	439	460	0.91
12	28	0.19	19	7.0	5.3	1	23	604	626	604	627	0.96
13	28	1.5	1.5e+02	4.2	0.2	1	20	635	654	635	656	0.90
14	28	0.0091	0.89	11.2	5.3	2	23	689	711	688	711	0.96
15	28	2.5	2.4e+02	3.5	0.4	2	23	717	738	716	738	0.94
16	28	0.0055	0.54	11.9	0.4	1	23	744	767	744	767	0.97
17	28	0.69	67	5.3	0.6	1	23	956	979	956	979	0.95
18	28	0.002	0.2	13.3	0.3	3	21	982	1000	982	1001	0.96
19	28	0.009	0.88	11.2	1.4	1	23	1130	1153	1130	1153	0.98
20	28	3.5	3.4e+02	3.1	0.3	1	20	1161	1180	1161	1182	0.92
21	28	0.66	64	5.3	1.5	2	23	1190	1211	1189	1211	0.97
22	28	0.00087	0.085	14.4	0.5	3	23	1216	1237	1214	1237	0.92
23	28	0.00026	0.025	16.1	1.9	1	23	1270	1293	1270	1293	0.98
24	28	0.79	77	5.1	1.1	3	23	1322	1343	1320	1343	0.95
25	28	0.00088	0.086	14.4	0.8	1	23	1347	1369	1347	1369	0.98
26	28	5.7	5.6e+02	2.4	2.6	2	23	1438	1459	1437	1459	0.96
27	28	9.4	9.2e+02	1.7	0.7	2	23	1484	1505	1483	1505	0.95
28	28	0.0013	0.13	13.8	1.1	1	23	1511	1534	1511	1534	0.97

Sequence Information

Coding Sequence: ATGGAGATGAAACAGGAACCGGAAGACGAGGATGTTGAGAACGCGGAAGATCCATTTGAGAGTGTGTGGGTGAAAGCAGAAACGGTAGTTGTTACACCGGACTATGACATTGATATCAACAACGGTGACCCCACTGCCAAAACCAATACTGAGAAAAAACCACTTCAGCCAACAAAGAAAGTTTACAACCAAAAGCTGAAAAAATGCACCCTTTGCGACTTTACAACAGTACACGGAAATAGTTTGAAGTATCACATGTTAACACACAGCGACGATCGCCCGTTCCAATGTGAATATTGCGATTTTACATCCAAATACCCTCCAATACTGAAACGACACAAAAACACGCTACACGCAGAACTAGTCTTGAGAAATGCCGAACCAGAAATCTTGAAATGCACAAAATGTAACTACACAACTACGATCAAGCAAAACTTGAAAAGTCACATTCGGAAACATAAAAAGGATAAGCAATTCAAATGTACTGAATGTAATTTCGAGACAGCGTACAGACACAACTATGTCAAACATATTAAAACACATCAACAGGATATTTATAGATGTGACAAATGTTCGTTTGAGACAAAATATTACGGACACATAACCAGACATATGGAGAAAATACATAATGAAGTGATGCAAGAATCGAAGCATATCTGTGAGTTTTGTCAATCGACGAGCAAAGAACGATGGAAGCTAAAAGTGCACCAAGAAAGAAGTATAATGAAATACCCGATAAGATGCCCGTATTGCAGTTTTGAGTCGACATACAAATGTCAAAtgagaaaacataaaaaattacatgatgATGATAACGCAGAGGGTACTTTCAATTTAGCAAAAGCACCCAATGCTACTCCGGTTACTCAAGAAGATATAAACAAATTCATCCAAACTGAACCAAGTGATACGTTATATAAATGTGATAAGTGTACATTTGAAACCAAGTTTGAAGGTCATATGACCAGACATTTGGAAACTATACACAATGAAATCGTGGCCGCCGGTTTTAGATGTGAAATCTGCAGTGCAACTTTCACAGAGAAATATAAACTCAGACAACACGTGACTAAAAGCAACGTCAAATATCATATCAAGTGCACAGAATGCAATTTTGAGACGTTGTACAAATGTGAAATGAGACGGCATAAGAAAATCGAACATTTCGACGATCGCGACAGATATTCATATAACAGACTTGGAGAGATTGTTCATAATGAAGATGAACCTAACGTAGACGGTTTCCAATGCGAGAAATGTCCTTTTAAAACATTATACGAGACAGACTTCACAAAGCATGCCATAGAAGCACACTATCTTTGCAAATTATGCAACAATTATTTCCCTGATAAATGGGGTTTGGACATGCATATAATACGAGGCAAAGAGGATGATGTTATCAAATGTACTTATTGCGATTTCGGCTCGCTATACCGATGCGAAACCAGAGCTCATATTAGCACTCATTTCACTAACCTCAGCGAACTTCCAAAAGAACATTTACCGCAAATCCCCGAAAACGTCCAACAAAATACAGGCGAAATTAGAAATCTTTTGAACAATTACATGTACGATACGAATTTGCCGAAAGCAATATCTGATATGCAAGAAAAAGTGGCAACTCCGTACTACAGACAGTTAGACGGTCCAAGTACAGCTCAAATGTATCAACCTCCTCAAGAAATACCGCCTCCAGATGTCAATCCGAACCAATTAGGTCATAGCAAATTTGGCTCATATCTTATCGACCAAAATTGTATAGATTGGCGATCGATACAAGTTATAGAAACGAACGACAGCGTCAATCGTTACAAATGCCCATTATGTGACTATCCGTCGAAATTCAAAGCGTGCGTTCAAAGGCATTTCCAAAGACACCACACCAACACAGAAAACCGTCCATACAAatgtgtgaattgcaatttcgCAACAAAAACTAAAGACGCCATCGCTTTGCACAGCAAACGGAACCCACCGGGCCCACTTTTGCACTGTCAAATCTGCAACTACACGACAAACTTCAAATGTGCTTTCAACTCGCACACAAAATTCCACTACGGCAACAAATGCAAAGTCTGCAAACAACAATACAAGCACAAACATGAACTGATCCGGCACGTTGCTACCAAGCACTTAGGCAAAGGCATTAAATGTCATCTGTGTGATTTTGTAGCGCTAAGAAAAGATTCTATGGCAAGCCACTTGTTAATACATTCCGGAGTGAAACCGTTCCCTTGCAGTTTATGTGAGTATGCAACTATAAGAAGGACGTTGCTTGATGTGCATATGAGGAAGAAACATAATCTTGTGGGACGTATTGGAGTCACCATGATTGATAAGAGCAAGATTGAGTCGCTCAAAGTGCCTTGTCCCGAaGATCAAAGGAAAAAGAGCGAGCCAAAAACCGATCATCAAGCCAATTCTAAAACTGCAACTACTCCTAATGATCCTATTGATAATGACCTCATGGAGGCAGAGGACTTCATGGCTCCAGATGACTACTATACGGGTCGAGATGACAGTGGTATGGCTCAAAATGATAGTGGTATAAACCTTAATGACGTTATAGATGTAGATGATGACGTGatggcagatgatgatgatcccATTAATGATGATTACGTACCTGACTATCAAGATGACTGTCCTATCGATGTATTAAGTGAAGATGTCGATGTTAAACCAAATATAATCAAAGAGGAAACTAAAAAAGTTGATGTGCCAAAACCATCGCACGAATTAACAGAATTCTTGACAATAGAGATGGATGTAGAAAAAGAAACAGTAGAGGAAATTGATAAAGAAATATCTGATATTAAAACTGAAAGTGACGATGATACAGACAGTTCAGATGATGATAACACTTTTAAATGTGAAAGGTGTCCGTTTGAATCGGTCAGTGAGAAAAATATGCTAAAGCATTTCATAAGAGCACACAATGGGTGCAAATACTGCCGACGCGTGTTCAGTACAGAAGATGATTACCAAGAACATATAAAATATAGCAAGTCTAGTGACATTGTCAGATGCTTTTTCTGTGATTTCGACTCTGACTACAAGTGTGAAACATGTAAACATATGTGCACACATTTCGTAGGATTCAACGGTGTCGAAGAGaatgataattttgttttagaagATAAAATGGCGAATTTGATGAATCTCGTAGAAACTCAACTGAAAACAACTGACAGTGAAAACAAAATTGTCGAAAACGAAGCTAAATATTTTCGTAATTACGATGGCAGCACCGATAATATTGATCCAGATGCCAGCAGTCAAATAGGAATGCAAGTGGAAGAGAATAGATACGGCAATTTCTTAGTGAACCCAACTCATATTGACAACAGATCATTGAAAGTTGAAAAACCAGCACACGCAGATGCTTACCAATGCCCCGCTTGCGAATTCTCAACGAAATACCGAACGTCAATGCAGAGGCATATACAAAGAAATCACGCGAAAAAACACTTCCGCCCTTTCAAATGTATAGACTGCGGGTTCGCAGCTAAAAGCAAGGATTCAATCCGAAAACATAATCAGCGAAAGATATCTTTCAAGAAACTGCAATGTTCCCAGTGCAGTTTCACGGCCAATGTCAAGTGTGCTTTAGCTGTGCACCAAAAGAGACATTTCAAGTCTAATTGCAAAGTGTGCGGTAAAGTCTTCAGCTATAGACACCCGCTTATAGCGCATTTCGCTGTCACACATCTCATGATTGGCTTAAAATGCCAATACTGCGATTTCTACGCATCGTTAAAAGAGACCATTATTGATCATGAATCTACACACACGGGTGTCAAAGCTTACCGATGTAGCATTTGCGATTACTCTGTGAATCGCAAAAGATTGCTACAAGTCCATTTTCGTAGGTACCATTTGGAAGAACGTAGCGCGAAACCAATAAAAAGATTCAAAGTTGAAGTTAAAGTCGAAGATACTAGTACTGGAGAATTGCTCGCGTGTGATCTCTGTAAATACACAAATactagcaaaaataaacttgccATGCACATAAAAAGGAAACATTCAATGGTGTTTATGTGTGAGAAATGTCCGTACACAACCCCTTATAAGGGAGCTCTTAAAACCCACAGTCGAACGCATACAAAATACTGTCTTTACAAATGCATAAAATGCCCTTACCAAACTACATTCAAAGGCCGAATACTCAGTCATTTAGCGAAGGTACACAATTTGGGGACAGGCGGTAAAGAAGCGAAATTGATTTGTGAATTTTGCAAAGTCAAACACAGGTCGACCTACATGCTCAAAGTGCACCAGGAGCAGACTCGTTACGACAGAGAAACTAAATGCAATTTATGCGATTTCGTTGCTATGTACAAATGTCAAATGGAAAAACATGAAACTACCCACACTGATTTCAAAGCCGAACCACCTAATGAAGAGAAGTTTTACATAGAAGAGGTTATAACAGAAAACGTTTTAAAATGTCGGTTTTGCAACTTTATCGGTTCAAAAAGAGGGACAGTGTCGCGGCATGAGGCGACTCACGCGGGTGAAAAACCTTTTCAGTGTAACATTTGCGGATTTTCATCAAAAACTAATCTTCTACTTATGCAGCATTGGAAAAAGAATCATGGACACGGGATTAAAAAGTAG
Protein Sequence: MEMKQEPEDEDVENAEDPFESVWVKAETVVVTPDYDIDINNGDPTAKTNTEKKPLQPTKKVYNQKLKKCTLCDFTTVHGNSLKYHMLTHSDDRPFQCEYCDFTSKYPPILKRHKNTLHAELVLRNAEPEILKCTKCNYTTTIKQNLKSHIRKHKKDKQFKCTECNFETAYRHNYVKHIKTHQQDIYRCDKCSFETKYYGHITRHMEKIHNEVMQESKHICEFCQSTSKERWKLKVHQERSIMKYPIRCPYCSFESTYKCQMRKHKKLHDDDNAEGTFNLAKAPNATPVTQEDINKFIQTEPSDTLYKCDKCTFETKFEGHMTRHLETIHNEIVAAGFRCEICSATFTEKYKLRQHVTKSNVKYHIKCTECNFETLYKCEMRRHKKIEHFDDRDRYSYNRLGEIVHNEDEPNVDGFQCEKCPFKTLYETDFTKHAIEAHYLCKLCNNYFPDKWGLDMHIIRGKEDDVIKCTYCDFGSLYRCETRAHISTHFTNLSELPKEHLPQIPENVQQNTGEIRNLLNNYMYDTNLPKAISDMQEKVATPYYRQLDGPSTAQMYQPPQEIPPPDVNPNQLGHSKFGSYLIDQNCIDWRSIQVIETNDSVNRYKCPLCDYPSKFKACVQRHFQRHHTNTENRPYKCVNCNFATKTKDAIALHSKRNPPGPLLHCQICNYTTNFKCAFNSHTKFHYGNKCKVCKQQYKHKHELIRHVATKHLGKGIKCHLCDFVALRKDSMASHLLIHSGVKPFPCSLCEYATIRRTLLDVHMRKKHNLVGRIGVTMIDKSKIESLKVPCPEDQRKKSEPKTDHQANSKTATTPNDPIDNDLMEAEDFMAPDDYYTGRDDSGMAQNDSGINLNDVIDVDDDVMADDDDPINDDYVPDYQDDCPIDVLSEDVDVKPNIIKEETKKVDVPKPSHELTEFLTIEMDVEKETVEEIDKEISDIKTESDDDTDSSDDDNTFKCERCPFESVSEKNMLKHFIRAHNGCKYCRRVFSTEDDYQEHIKYSKSSDIVRCFFCDFDSDYKCETCKHMCTHFVGFNGVEENDNFVLEDKMANLMNLVETQLKTTDSENKIVENEAKYFRNYDGSTDNIDPDASSQIGMQVEENRYGNFLVNPTHIDNRSLKVEKPAHADAYQCPACEFSTKYRTSMQRHIQRNHAKKHFRPFKCIDCGFAAKSKDSIRKHNQRKISFKKLQCSQCSFTANVKCALAVHQKRHFKSNCKVCGKVFSYRHPLIAHFAVTHLMIGLKCQYCDFYASLKETIIDHESTHTGVKAYRCSICDYSVNRKRLLQVHFRRYHLEERSAKPIKRFKVEVKVEDTSTGELLACDLCKYTNTSKNKLAMHIKRKHSMVFMCEKCPYTTPYKGALKTHSRTHTKYCLYKCIKCPYQTTFKGRILSHLAKVHNLGTGGKEAKLICEFCKVKHRSTYMLKVHQEQTRYDRETKCNLCDFVAMYKCQMEKHETTHTDFKAEPPNEEKFYIEEVITENVLKCRFCNFIGSKRGTVSRHEATHAGEKPFQCNICGFSSKTNLLLMQHWKKNHGHGIKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -