Tabs030676.1
Basic Information
- Insect
- Tuta absoluta
- Gene Symbol
- -
- Assembly
- GCA_029230345.1
- Location
- CM055306.1:8818912-8821394[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00024 0.023 16.2 0.9 3 23 281 301 280 301 0.97 2 12 9.1 8.8e+02 1.8 0.6 5 13 358 366 355 371 0.83 3 12 0.13 13 7.5 2.2 1 23 384 407 384 407 0.95 4 12 0.00062 0.06 14.9 1.2 1 23 411 433 411 433 0.98 5 12 4 3.9e+02 2.9 0.4 2 20 455 473 454 477 0.88 6 12 0.037 3.6 9.3 2.9 1 23 481 504 481 504 0.98 7 12 1.7 1.6e+02 4.1 0.0 2 22 527 547 526 549 0.84 8 12 2.7e-06 0.00027 22.3 1.9 1 23 559 581 559 582 0.96 9 12 0.0015 0.15 13.7 2.3 2 23 598 619 597 619 0.96 10 12 0.013 1.2 10.7 0.6 1 23 625 647 625 647 0.95 11 12 0.5 49 5.7 3.9 1 22 653 674 653 677 0.90 12 12 0.0051 0.49 12.0 0.0 2 23 729 750 728 750 0.97
Sequence Information
- Coding Sequence
- ATGGAGGCCGAAGAAATGAACCCAGATGTAACcattaaaaatgaaattgatATCGAAGAAGAAAAACTCATTAGAGTTAGTACAGAACACTTAAAAGTGCCGCTCAAAATGGAAGACGATCCAAACACACCGACAGAGCCAGCTAATGTAAACCTTCATGAATCTcttcaaattgaaataaaacaagaggcagaGTGTGATCCtaaggataataattatttgatagaaAGAAACGATAAAACAGATAAACCGACTGTTGTTAGAGAACCAGAAATTAATACGCAAGCTCATATTGACGTTAGAATAAAGGAGGAGCAAGATGAATCTATTGTGTCATACGACTTCCCGACCTTTGACGATGCGGGCTGTATGGACAGTAGCGAGGCCTTAGAGAATGTGGAGACCAGCCTTCAAGACGATATTAAAACGGAAAATGTTGGGCATCAGAGCTGCTCCTACGACTATTATCAAGATAAAGAAGTAAAAATCGAGCCGGAAATAGTTCCTGAAATAAATTCTTCCAATCAAATAACACCAGATTTGCCAGATACGGGCCGTAAATATTCATTCGTAATGAAACTGCCAGGGGAGGTTTTGAATAATATAGATCATATTGTTTCATCCTGTACTAATGACACGAATAATGCGGATGCCTTGCCAGCAGAGCCAGTATGCCCTGATGGTGAAACAAATGACGATGTAgttgcaaaaataaacaatgcAACTGATCAGAGTAAAATTCACGATCTAAACTCTTTCCAACTAAATTCTATAACTGGCAATTTCTTGTCACTGGAACAAGAAGCTTTGATCATGTTACAACCACAGAAAAACGTTGATTGTCCCAAGTGTCCAAAGAAGTACAGGTTAAAATCTGAACTCTATCGACATTCAAAAGTTCATCAGACAATTGAGAATTATGAAAACGGGCGAAAGAGGGCTCAAGCAACCGCAAAGAAAAACAGAATGGCTAGAATGCATCTTTTAAAACAACAAATTGATGAACATGATTCGCAAGATTCCTGTTCTCATCAAAATGAGGGCAAAGAAGAAAAAGTGGGTTACAAATGCACATGCGGGAAAACTTTTCAGCGAAAAACAAGAATGGAGTCATGCCATAGGACACACGATTTTAGCGAATCAGAAAAGTTCTACTGCATGACTTGCCTGAAGGACTTCAAGAGCAAAGACGAGCTGGCTTTTCACAGAAAGCGCCTGCACCGTAAGAAATTCCCCTGCAAGTTCTGCCCGACAGACTACGCTACACGGAAAAAGCTTTTCAGACATCTTCAGATACATCAGAGAGTCCATCAAATGGAATACAAAGTCATCGAAGAAACCGTCAAATCCAAGAAGAAGTTGCGCTGTTTCTTTTGCTCAAACTGCTATGAAGACATTGCAGAATTGAAGATTCACGCCGTGGGCGAACATACGGGCCTATATTCGTGTCCGCATTGTAGGAACACCTTTCCAAAGATAATTGATTTCAGCAATCACACAAAAACGTATCACCCAGAAGTGGGCCACCAGTCTGTTATGGATGTCCTCGAAGCGTTTTCCAGGCTAACCCAAGAGTGGAAATGCGAGGAGTGTGACTTACAATTCTGGGAGGCTGATAAGCTGGCCTTACACCAAGTGGAGCAACACAGCCCAGAATTAAAAAGCGACCACCAGTTCCAATGTCCGGACTGTCGAAGAGTTTTCATCAGTCAAAAAGGTCTGACGTCTCACAGACGCATACACCACAGCACTGAAACTACTGAACATTCTAAAGAACAAGTTGCGGGCATCATGTGTTTGGAATGTAGAAAAATGTGTAAAGACATGAGCGCCTTAACATCGCACATGCGTTTTCACTCGCCTGACAGAAAATACCCGTGCAAATTCTGTGATTTCCGTTTCGCAACGCccgaaaaaagaaaaacgcaCGCGGATATCCACACGGGCGATATGAAATTCGTATGTTTCATTTGCGAGTATCAGTGCAGTTCGGAAAACCGACTGAAAAAACACAAGCAGTCATTGAAACACGCAAACATGAGTGAGTACTTGTTAACCGGGAAACCATTGATAgaagaaacaggttctaaagtcaAAATTCAGAAAGAGGGAAGTGCTAAGAAGAGAAAGAAGTCAAAGAATGATAGTAAAAGTGATATCGATACTAGTTCAAGCAGTGAAGTGCGCTGTGAGGTCTGCGGGGAGATATTCCCGAGTGAGGCTCAAATGTTAGAACACAAAGAAACTCACCCTTTCATACAAATACCTAGTGCCGAGGCTGATAAACCTACAAGAATATTCTTTAAATAG
- Protein Sequence
- MEAEEMNPDVTIKNEIDIEEEKLIRVSTEHLKVPLKMEDDPNTPTEPANVNLHESLQIEIKQEAECDPKDNNYLIERNDKTDKPTVVREPEINTQAHIDVRIKEEQDESIVSYDFPTFDDAGCMDSSEALENVETSLQDDIKTENVGHQSCSYDYYQDKEVKIEPEIVPEINSSNQITPDLPDTGRKYSFVMKLPGEVLNNIDHIVSSCTNDTNNADALPAEPVCPDGETNDDVVAKINNATDQSKIHDLNSFQLNSITGNFLSLEQEALIMLQPQKNVDCPKCPKKYRLKSELYRHSKVHQTIENYENGRKRAQATAKKNRMARMHLLKQQIDEHDSQDSCSHQNEGKEEKVGYKCTCGKTFQRKTRMESCHRTHDFSESEKFYCMTCLKDFKSKDELAFHRKRLHRKKFPCKFCPTDYATRKKLFRHLQIHQRVHQMEYKVIEETVKSKKKLRCFFCSNCYEDIAELKIHAVGEHTGLYSCPHCRNTFPKIIDFSNHTKTYHPEVGHQSVMDVLEAFSRLTQEWKCEECDLQFWEADKLALHQVEQHSPELKSDHQFQCPDCRRVFISQKGLTSHRRIHHSTETTEHSKEQVAGIMCLECRKMCKDMSALTSHMRFHSPDRKYPCKFCDFRFATPEKRKTHADIHTGDMKFVCFICEYQCSSENRLKKHKQSLKHANMSEYLLTGKPLIEETGSKVKIQKEGSAKKRKKSKNDSKSDIDTSSSSEVRCEVCGEIFPSEAQMLEHKETHPFIQIPSAEADKPTRIFFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00844815;
- 90% Identity
- -
- 80% Identity
- -