Tabs016850.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tuta absoluta
Gene Symbol
-
Assembly
GCA_029230345.1
Location
CM055293.1:15965816-15981183[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.0085 0.83 11.3 0.0 2 23 146 168 145 168 0.92
2 25 1.4 1.4e+02 4.3 1.8 1 21 421 441 421 442 0.93
3 25 0.26 26 6.6 1.4 3 23 453 473 452 473 0.94
4 25 9.2 9e+02 1.7 0.2 1 21 489 509 489 512 0.75
5 25 1.1 1.1e+02 4.6 0.7 5 23 524 543 521 543 0.92
6 25 9.3 9e+02 1.7 1.4 7 23 593 611 586 611 0.81
7 25 0.4 39 6.0 0.8 2 21 625 644 624 647 0.81
8 25 0.00099 0.097 14.2 1.9 1 23 681 703 681 703 0.97
9 25 8e-06 0.00078 20.8 2.4 1 23 710 732 710 732 0.98
10 25 0.00013 0.013 17.0 2.3 1 23 737 759 737 759 0.96
11 25 0.0041 0.4 12.3 2.9 1 23 765 787 765 787 0.98
12 25 5.2e-06 0.00051 21.4 0.8 1 23 793 815 793 815 0.98
13 25 0.00062 0.06 14.9 3.3 2 23 822 843 822 843 0.98
14 25 0.00071 0.069 14.7 0.1 2 23 853 875 853 875 0.96
15 25 0.23 23 6.8 0.3 1 23 880 902 880 902 0.97
16 25 0.59 57 5.5 0.1 3 23 917 937 916 937 0.97
17 25 0.67 65 5.3 0.1 3 23 958 978 957 978 0.97
18 25 0.59 57 5.5 0.1 3 23 993 1013 992 1013 0.97
19 25 0.59 57 5.5 0.1 3 23 1028 1048 1027 1048 0.97
20 25 0.64 62 5.4 0.1 3 23 1063 1083 1062 1083 0.97
21 25 0.64 62 5.4 0.1 3 23 1098 1118 1097 1118 0.97
22 25 0.64 62 5.4 0.1 3 23 1168 1188 1167 1188 0.97
23 25 0.64 62 5.4 0.1 3 23 1203 1223 1202 1223 0.97
24 25 2.5 2.5e+02 3.5 0.0 3 23 1238 1258 1237 1258 0.96
25 25 2.5 2.5e+02 3.5 0.0 3 23 1273 1293 1272 1293 0.96

Sequence Information

Coding Sequence
ATGGCTTCAGATGAATCGGACGACGAACCCTTAGCACTCTTAGCAGCAGCTAAGCAATCGGAtccacacaaatatttaaagaaactGAGTGCAGAAATTGACGTCGACTATGACCCGAAACCAAAGAAGAAAAAAGCcaagaaaactaaaaataaagtaattaaaaatgaaGCATTGACTATACAATTCGAACGTTCACTGAAACAGGCTGCTCGGACACTAATACAGCGACCGGATGATGTGTGGTTGTATTTAAAAGATTTAAATCCAAATGGTCCTTACAGTTGTTTACTTTGCTCGGAATGGTTTATAAGCAAATCTAAAGTTGTTATTCACTACGTCTTGAATCATAAGAAAGACTACTGTGGAATATGCAGGTACTTCGTGCTAGACAGAGAGGCCTGGGTGACACATACCCAATTCCATGCTCCTTGGCCATGCTCACAGTGCAATGAGACCTTTCCATCGGAGCTGGAATTGCGCCAGCACTTGAGTGCAGCTCATAAGCTTGTACATTGTCGCCTGTGCCATTTCAGACTCCCCGATAATGATCAATACAACTTCCATCTGCTCCAAAAACATAATGTCACAAATGTGTCACGTAAAAATGAACCAAACATGTGGGAACTGGAATTTGATGGCGGTCAAAACTTTTCATGTCTCCTCTGCTCAAAGGCAAATAATCCACCAACAGCATTCTTTAGCCATTTCTTAGGATATCACCATTTTACAATCAAATGCATCACTAACATTGTCGGAGGACAAGATACACCATTCTTATTGTTCGGAGCTGACCTTTCCCAACAATTTATTGAGAGTTTGAAAGATCAGGGCAAGTGCGGGTATGTGGATTTAGACAAAAATATCACAACAATACCAGATTTTAGTATAAAGAGAGAAGACTTTGTTGGGGCTGTATCTGTCAAAGAAGAGGTTTATAGTGATAATGAGGAAACAAAACCAGAAGAAACTGTCCGAGAAGACTTTGAGATAATAAAGACTTACAAAGGAGACCAAGATTTTGATGTCACACAAATGGAGCTGATAATCCTAgacaaaaaatactttgagtATTTGCATAAAGTTTTAACCGATATAAATTCAAACACAATACCAACCAATTCAACAATTGAGTATGAAAAAGATAACCCAAACACAATCGTAAATGTTGATTGTTCTTTATGCCCATCAACACAGCCTACCATGGAGGCTTTTATCAATCACATGTCTAAGATGCATAGTGTTAATACAGTGCCAGTTTTCTGCTGCAGACTTTGTGTTACTACATTTGACACTCTAAACGAGTTAGACCATCATGTGAAGGAGGAATTACAGGAGTTTGATGACTTATGGCTTTGCCAGTTTTGTGACAAAGAGTTTGATAACAGACATGACACAAGAGGTCACCTTGCAGAACATCAGGATATCCTTCAAAATGATAATTGCTTTAGTCCCCACATAGGGTTCAAATGTAGGTATTGCCCCACTCTGTTTTGGAATGAGCCAGATCGAGAACAACACCAAATTGAGATACATTTTCAAAACAATGAGGACAATTACTATAAGTGCGAATGTGAAGAAGTATTTAGTGATAAGATATGGTTCACATACCACTACTTTAAGAAGCATTTTAAAGAAGAGAGCTCTATCACAAATACTCGGCTGTACAAATGCTGCCTATGCTCCATAGTAATGTCGTCTGTCCATCAGATGAGAGATCATTTTGAAAAAGAGCACCCTAAAGCCAGAAAAGTGTTTTGCAGTTTAGAAGGATGCCAGTATAGGCCTCTCAGTCATAAAAAATCTTTCCAGCTGCATTTGAGGCGAGTGCATTCGATGCAGCCGGGTGCGCGCGACAAGGAGACGTCGTGCACGTGCGCGGTGTGCGGCCGCGAGTTTCCCACGTGGCGCGCGTGCAGCGCTCACACCGCCGCCGCGCACGGACCCGGCAAGTTCAAGTGTCTCATCTGCAAGGCGATGCTGCACTCCGTGGACGAGAGGAAGCTCCACTACCTGCTAGCCCACCCGGGCAAGCATCCGTACTCCTGCAACGTTTGCGGCAAATCCTTCCTCTACAAGTCATCCCTTTATATGCACAAGAAAGAACACTCGGCAATCAAGGAGGACTATACTTGCGATATTTGCCATAAAGTATTTGCGAAAAAGGACTCATTCCGTGAACACCAGCAAATCCACGAGGGTCCGCGCCACGCGTGCTCCTACTGCCCGATGCGTTTCGTGCAGCGCTCCAACATGTTGCGTCACGAGCGCCGCCACACAGGGGAGCGGCCCTATTCCTGCCCTCATTGCGAGAGGACCTTTGCTGATAAGGGAGCTTGCTCATCACACGTCAAGACGCACACGCGCGACACGACATACGACTGCCTGTACTGCGGCGCGTCCTTCGCGCAGAAGTCCAAACTGACGTACCACATCCGTCGCCACACCGGCGAGAACCTCGAGACGTGCTCGGTCTGCTCGAAGCTGTTCACGAGCGCGTGCTCGCTGCGGGAGCACATGAAGACTCACGGTGACAAGAGAAAAGGTGAAAGCGCCAAATGCCCGCTTTGTGATCGCACATACGCGGACGAACGTTACATGATCCGTCACTTACGCGCCGTCCACACGAGCAGCCGTCACCCGTGCCCGTTATGTCGCAAGCAACTCAGCAGTATCCCCGTGCTCCGGTCACACGTGCTCACACACAGCGACCGCAACATGTTCTGGGTGAGTCCCTGTGGTCCCCCGTGCCCGTTATGTCGCAAGCAACTCAGCAGTGTCCCCGTGCTCCGGTCACACGTGCTCACACACAGCGACAGTAACATGTTCTGGCGACCGCAACATGTTCTGGGTGAGTCCCTGTGGCCCCCGTGCCCGTTATGTCGCAAGCAACTCAGGAGTGTCCCCGTGCTCCGGTCACACGTGCTCACACACAGCGACAGTAACATGTTCTGGGTGAGTCCCTGTGGTCCCCCGTGCCCGTTATGTCGCAAGCAACTCAGCAGTGTCCCCGTGCTCCGGTCACACGTGCTCACACACAGCGACAGCAACATGTTCTGGGTGAGTCCCTGTGGTCCCCCGTGCCCGTTATGTCGCAAGCAACTCAGCAGTGTCCCCGTGCTCCGGTCACACGTGCTCACACACAGCGACAGCAACATGTTCTGGGTGAGTCCCTGTGGTCCCCCGTGCCCGTTATGTCGCAAGCAACTCAGCAGTATCCCCGTGCTCCGGTCACACGTGCTCACACACAGCGACCGCAACATGTTCTGGGTGAGTCCCTGTGGTCCCCCGTGCCCGTTATGTCGCAAGCAACTCAGCAGTATCCCCGTGCTCCGGTCACACGTGCTCACACACAGCGACAGCAACATGTTCTGGGTGAGTCCCTGTGGTCCCCCGTGCCCGTTATGTCGCAAGCAACTCAGCTGTATCCCCGTGCTCCGGTCACACGTGCTCACACACAGCGACAGCAACATGTTCTGGGTGAGTCCCTGTGGTCCCCCGTGCCCGTTATGTCGCAAGCAACTCAGCAGTATCCCCGTGCTCAGGTCACACGTGCTCACACACAGCGACCGCAACATGTTCTGGGTGAGTCCCTGTGGTCCCCCGTGCCCGTTATGTCGCAAGCAACTCAGCAGTATCCCCGTGCTCCGGTCACACGTGCTCACACACAGCGACCGCAACATGTTCTGGGTGAGTCCCTGTGGTCCCCCGTGCCCGTTATGTCTCAAGCAACTCAGCAGTATCCCCGTGCTCCGGTCACACGTGCTCACACACAGCGACCGCAACATGTTCTGGGTGAGTCCCTGTGGTCCCCCGTGCCCGTTATGTCTCAAGCAACTCAGCAGTATCCCCGTGCTCCGGTCACACGTGCTCACACACAGCGACAGCAACATGGTCTGGGTGAGTCCCGTgtga
Protein Sequence
MASDESDDEPLALLAAAKQSDPHKYLKKLSAEIDVDYDPKPKKKKAKKTKNKVIKNEALTIQFERSLKQAARTLIQRPDDVWLYLKDLNPNGPYSCLLCSEWFISKSKVVIHYVLNHKKDYCGICRYFVLDREAWVTHTQFHAPWPCSQCNETFPSELELRQHLSAAHKLVHCRLCHFRLPDNDQYNFHLLQKHNVTNVSRKNEPNMWELEFDGGQNFSCLLCSKANNPPTAFFSHFLGYHHFTIKCITNIVGGQDTPFLLFGADLSQQFIESLKDQGKCGYVDLDKNITTIPDFSIKREDFVGAVSVKEEVYSDNEETKPEETVREDFEIIKTYKGDQDFDVTQMELIILDKKYFEYLHKVLTDINSNTIPTNSTIEYEKDNPNTIVNVDCSLCPSTQPTMEAFINHMSKMHSVNTVPVFCCRLCVTTFDTLNELDHHVKEELQEFDDLWLCQFCDKEFDNRHDTRGHLAEHQDILQNDNCFSPHIGFKCRYCPTLFWNEPDREQHQIEIHFQNNEDNYYKCECEEVFSDKIWFTYHYFKKHFKEESSITNTRLYKCCLCSIVMSSVHQMRDHFEKEHPKARKVFCSLEGCQYRPLSHKKSFQLHLRRVHSMQPGARDKETSCTCAVCGREFPTWRACSAHTAAAHGPGKFKCLICKAMLHSVDERKLHYLLAHPGKHPYSCNVCGKSFLYKSSLYMHKKEHSAIKEDYTCDICHKVFAKKDSFREHQQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYSCPHCERTFADKGACSSHVKTHTRDTTYDCLYCGASFAQKSKLTYHIRRHTGENLETCSVCSKLFTSACSLREHMKTHGDKRKGESAKCPLCDRTYADERYMIRHLRAVHTSSRHPCPLCRKQLSSIPVLRSHVLTHSDRNMFWVSPCGPPCPLCRKQLSSVPVLRSHVLTHSDSNMFWRPQHVLGESLWPPCPLCRKQLRSVPVLRSHVLTHSDSNMFWVSPCGPPCPLCRKQLSSVPVLRSHVLTHSDSNMFWVSPCGPPCPLCRKQLSSVPVLRSHVLTHSDSNMFWVSPCGPPCPLCRKQLSSIPVLRSHVLTHSDRNMFWVSPCGPPCPLCRKQLSSIPVLRSHVLTHSDSNMFWVSPCGPPCPLCRKQLSCIPVLRSHVLTHSDSNMFWVSPCGPPCPLCRKQLSSIPVLRSHVLTHSDRNMFWVSPCGPPCPLCRKQLSSIPVLRSHVLTHSDRNMFWVSPCGPPCPLCLKQLSSIPVLRSHVLTHSDRNMFWVSPCGPPCPLCLKQLSSIPVLRSHVLTHSDSNMVWVSPV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-