Tabs031286.1
Basic Information
- Insect
- Tuta absoluta
- Gene Symbol
- -
- Assembly
- GCA_029230345.1
- Location
- CM055307.1:6411764-6417532[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.37 36 6.1 1.2 2 20 333 351 332 355 0.88 2 13 0.95 92 4.9 0.4 1 23 361 386 361 386 0.93 3 13 0.22 22 6.8 3.2 1 23 392 414 392 414 0.96 4 13 0.012 1.2 10.8 0.2 3 20 422 439 420 441 0.92 5 13 0.18 17 7.1 1.4 3 23 489 510 487 510 0.93 6 13 0.051 5 8.8 0.9 3 23 546 566 544 566 0.92 7 13 0.39 38 6.1 0.2 2 15 573 586 572 593 0.84 8 13 0.00059 0.058 14.9 0.2 2 23 609 630 608 630 0.96 9 13 0.0031 0.31 12.7 1.7 1 23 638 660 638 660 0.96 10 13 9.8e-06 0.00095 20.5 2.2 1 23 665 687 665 687 0.98 11 13 0.00072 0.071 14.7 4.8 1 23 693 715 693 716 0.95 12 13 7.1e-06 0.00069 21.0 3.2 1 23 728 750 728 750 0.98 13 13 2.5e-05 0.0024 19.3 3.0 1 23 755 778 755 778 0.97
Sequence Information
- Coding Sequence
- ATGGATTCCGTAGTCCAACAAAGACCCGATGGTTCTGAATTTTGTGTTCGTGAACAAATACAACAAACGCTGGGTTCAGAAATCCAAAAAATACCGGAATACCCAGTATTATATCATTTGCCAGATGAAAAACAACTGACAAGTACATGTTCTCAAGTCGATCATGTAAAACCTGTAGAAATACAAGAGATTTTGGCTTCAGAAGTGCAACATATAACTGGAAATTCCGAATTTCGTGTGCCTGATGCCACACAACGTGATATATGCTCAGTAGTACACCAAGAAAGACACAAAGATACAGAACTTATAGTAACTGAAGAATCTTTGGGTGCTAAAGTTCAACTACATCCTGAAgatattgattttgctataacaCCACAGACACCGGCCCCAGAAGTTCAACAAACGCCCATATTTCCTGGCTTTAATTTGCCTGATGAGGAACAAAATGCTACGGCTTCAGACGTTCAACAGAGGCCACTGTGTCGATTCTGTGCGCAGGACAAGAATCCAGAGGAGCTAACAGATCTATCAGCTGATAAGGAGACTATGAAACTAGTCATGTCAATTTTGgagtttttcaaaatttcatatGTAAACCTAAACAATGCAGTTTTACCTAAAACTATGTGTCAGGATTGTTATGATCAGATTACAAGTAGTTACACATTTTATCAGAAAGTAAGAGAGAAGCAGgtaattttaaatatgatttattgtGTTAAAGAGGAATGTGAACAAAGAgacgttaaaataaaaattgaacgAATTGATTCAGAGTCCTCCGATGAAGATTACGAACCGAAACCAAGTACTGACACAGGTAATTGTTACATGGAAGTTACCCCAAATATAAGTTCTTACTATCCCCCAAAGCAAGGCAAAGCTAAGTCAAATTCTAAAAGTTCAAAATCAATCTCCGTAAAGAAAGAGACCAAAATCAAAAGAGATCCCGATGCGAGAAATAGCAATGAAACCTGGAGTTCGTACACCTGGTGTTGCAAGTACTGCGGAGTGATTTGTGACAGCATGGAGGATCTGCGGTCACATGGCGTGCTCCTGCATAAGAAATGCTATGCTTTCAAATGTGCCGACTGCAATGTTAACGTACTTTTGTTCAACACATTTAATTCATTCATCGAGCATGTCAGGACACATAGAGACAGTTTGAGGTACTGTTGTCCACAATGCAATATGCGTTTTGAAACCGTATCTGAGTGTACAGAGCACGCACTCACTCACTGGTCAAACGGACAGCAGATCTGTCAGTGGTGCGGACAAATCTGTCGTGACAAAGGCGCTCTGCAAGCGCACAAAAGTATGTCAAAACAAGTTGGGGTGGAGAAGAAAGTTTACAGGAAACCCCGTGTAGTGACACACAAGATAAATCAAATGATTGCGACCGGTGCCAAGCATGGAGTGGGAAGCTTCCTAATATTGAACTGGGATAGTTACGAGTGGGCTTGTCAGGAGTGTCTGCTGCACTTCCCGAGCGTGCACCTCCTGCGCAAGCACACGCAGGAGCTTCACGACAAGTGCTTCTCTATGAAGTGCGCCGACTGCCCCGTCATACGCTGGAACTACCGATCGTTTGTCGCTCACGTGTCTGAACATAGACCGTATTTGAAAAAACATTGTCCGTACTGCAACTTCCGTATAGAAAACGCAGCGGAACTAAAGAAGCACGTCGACTTCCACTTCACCGGCGCCAGGAAACCCTGCGACGAGTGCGGACAGATATTCATCAACAAGAAACAAGAACTCGAACATTACAAACAGTTCAACCCTGTCAGACGACAAAAGTTCCTCACAGTCGAGGATTTAACCTGCGACATCTGCAGAAAAGTTTTCGAAACCAACCCGCAGATAGTACGCCACCGGATGATACACGACGAAACACGCAAAAAGGAACACATCTGTGACACGTGTGGTAACCAGTTTTACAAAAAATCTTCTTTAATTCTACACGCGAAATCACATAGCGGGAAAATACACGTCTGCAAAATATGCGACCGAGGGTTCTCCAACGAGAGATATCTCAGGAACCACGTCAAAACTCATTTAAACACGGAACAGTTTATCTGTGATCATTGCGGACGACAGTTCAATAGAAAACTGTACATAATGCGACACATGATGCAACATCACATCGCTTACGACGAACCGAAACAAGCGTCCAAATTCAAATGTAAAATATGTTTCAAACAGTTTACAACCTCCAGCTATCTGAAGATCCACACGAATATCCACTACGGGAAGCGTTACCAATGTCGGAATTGCGACAAAACGTTCACTAACTGGGGGAATTGCAACAAACACATGATAAGGATACATCGCACGACGCTCGCCAAAACTAAAGCGACCCCTCAGGGCAGGATCCCCATTGAGAAAGTGGAGGAAGCGCCCCACGTCGCGGAGATCAACAAGCAGTGGATGGAGGAGGTCACCATGAATCAAATGCTGCGGAGGAAGAGGATTAAACTGGAGAATCGGGAAAAGTAA
- Protein Sequence
- MDSVVQQRPDGSEFCVREQIQQTLGSEIQKIPEYPVLYHLPDEKQLTSTCSQVDHVKPVEIQEILASEVQHITGNSEFRVPDATQRDICSVVHQERHKDTELIVTEESLGAKVQLHPEDIDFAITPQTPAPEVQQTPIFPGFNLPDEEQNATASDVQQRPLCRFCAQDKNPEELTDLSADKETMKLVMSILEFFKISYVNLNNAVLPKTMCQDCYDQITSSYTFYQKVREKQVILNMIYCVKEECEQRDVKIKIERIDSESSDEDYEPKPSTDTGNCYMEVTPNISSYYPPKQGKAKSNSKSSKSISVKKETKIKRDPDARNSNETWSSYTWCCKYCGVICDSMEDLRSHGVLLHKKCYAFKCADCNVNVLLFNTFNSFIEHVRTHRDSLRYCCPQCNMRFETVSECTEHALTHWSNGQQICQWCGQICRDKGALQAHKSMSKQVGVEKKVYRKPRVVTHKINQMIATGAKHGVGSFLILNWDSYEWACQECLLHFPSVHLLRKHTQELHDKCFSMKCADCPVIRWNYRSFVAHVSEHRPYLKKHCPYCNFRIENAAELKKHVDFHFTGARKPCDECGQIFINKKQELEHYKQFNPVRRQKFLTVEDLTCDICRKVFETNPQIVRHRMIHDETRKKEHICDTCGNQFYKKSSLILHAKSHSGKIHVCKICDRGFSNERYLRNHVKTHLNTEQFICDHCGRQFNRKLYIMRHMMQHHIAYDEPKQASKFKCKICFKQFTTSSYLKIHTNIHYGKRYQCRNCDKTFTNWGNCNKHMIRIHRTTLAKTKATPQGRIPIEKVEEAPHVAEINKQWMEEVTMNQMLRRKRIKLENREK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00844739;
- 90% Identity
- -
- 80% Identity
- -