Tabs032379.1
Basic Information
- Insect
- Tuta absoluta
- Gene Symbol
- ECU03_0790
- Assembly
- GCA_029230345.1
- Location
- CM055309.1:4403233-4422872[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0034 0.33 12.5 0.1 1 23 217 240 217 240 0.97 2 11 0.38 37 6.1 0.9 2 23 248 269 247 269 0.96 3 11 6.7 6.6e+02 2.2 0.2 1 13 273 285 273 287 0.84 4 11 3.1e-05 0.003 19.0 2.4 1 23 318 340 318 340 0.98 5 11 0.00028 0.027 16.0 2.0 2 22 351 371 351 375 0.92 6 11 0.0081 0.79 11.4 1.3 1 23 414 436 414 436 0.97 7 11 0.021 2.1 10.0 0.4 2 22 445 465 444 469 0.90 8 11 3.3e-05 0.0032 18.9 0.4 1 23 477 500 477 500 0.91 9 11 0.00023 0.023 16.2 3.8 1 23 506 529 506 529 0.96 10 11 2.8e-05 0.0027 19.1 1.0 3 23 538 559 536 559 0.91 11 11 0.051 5 8.8 3.8 1 23 565 588 565 588 0.97
Sequence Information
- Coding Sequence
- ATGGATACCTTTCCAAATCACATTTGCAGTGTTTGTTTCAGCACTGATAGGAAAATAATGGTTATGAAAGATCcaaagaaaaaagaatattttttacgaTTTATCTGCGAGATTTCGGCGGTGCAAGCATGGTCTGACAATATATCTGTTCAATTGTGCTGGGAATGTGAAGCTCTGTTACAGCGCTTGAATAAGTTTAAGAATAAAGCACATCATTCACTTGTTACTCTCAAAAATTTCACAGAGAAGCGACAAGAAGTAAATACATCTCTccaaataaaaaagcaattttcTATAAACTTGTATCCAAATGAAAATCTAACGGCTGCTACATATAGTGAAATAGTCAAATTAGAAGAAAATGAAGTACCACTAGTTAAGGAAGAGTTTGACAACTTTTCAGTATATGATGGACATAATTCTGATAATTATTCAGATGATGATGACAAGACTTTAGAAGAATTGAGTCAAATGATAAACAATCAAATGAATAATTACAAGAAAAAGCGGCGAAAAATAGAGGAACACATAGAAgaatctgaaataaaaaaggaagAACAATGTTATGTAGAAAAAGAATTAACCAATCAAGAAATAGAAGAAGAGAGAAGATCTCTACAGTTAAGAGAAGATTATGTTAATGCTGTATTCCGATGCGAAAGATGCATATTGTCATTTCCAAATGCTGAAGATTTGAAGGATCATATCAACATTAAACATGAATTGAATGGCGCACAATGGAAATGCCCGTGGTGCGAATGTACTCTCGGCTCGCAGGTCGCGTTTAACTACCACACCACGAAGCACACGAAGCGCTACGTGTGCTGCGTGTGCGGCCACGCCGCGCGCAGGCCCGATTTGGAATACAACGGGCTACTCGAAAATGGTGCAAATAAAAACCAAACATTAGAAACCGATGGAACCGAGAGTATAAAGAACGACACGCCTGCGTTCCAATGCGAGTTCTGTGACAAGTCGTTCCGCTGGAAAACCTCCCTCAGGAAACATCTTGAGACGCATCGCATAGAAACTGGGCAAAAGCGGCGGCCTTATTGCGAGACCTGCAGGTTATCTTTCACAACTACCTCAAACCTACAGAAACACGTAAAGACCAGTTCTAAACAccaaatacaattaaaattaagGAAACTAAAAGACGACTCAACATTACCAGACAAGGACAAAGAACATTTGAAGATTGAACAAATTCGGTGCAGCGTCAACTCCAAGCGACAGGTGTTCCCTTGCGCTCAATGCGACCGGCGGTTCCAATGGAGAGGCAACCTGTTGAGACACCTTCACAGTCATAGAGCCAAAGCAAACGGCGAATTGGTATGTGAGCCGTGCAACAGGACATTCTCCTCCATAGCTACATACAACCAACACATGAAGATCAGCAGGAAACATGTTTCTGAGAACGATTTCAAATACATGTGCAGCGATTGCGGCAAAAAGTTCGCCAACAAAACAAGACTGAAAGACCACGTGGACTGGGAACATCTCAAGAACTTTGTGCACAAGTGTCCTGTGTGCCAAAAAGTATTCAAGAGCCACACATCTCTCTACCTTCACAAGCAGGtggttcacaaaaaaaataacccGGACCACCTGTGCGACCATTGTGGAAAACCTTTTCCGAACCGCGCTAAACTCCGCAACCACATAATCGCCTTGCACACAACAGAGGCGCCTTACGCGTGCAGCACGTGCAACGCGCGCTTCAGCTGGCACTCGTGTCTCTCCCGGCACGTGCGACGCGTGCACAAAGCCAAGCCTGCGACAGGGCTGCAGATTGGCGCTGAAATAGTGGGGTAG
- Protein Sequence
- MDTFPNHICSVCFSTDRKIMVMKDPKKKEYFLRFICEISAVQAWSDNISVQLCWECEALLQRLNKFKNKAHHSLVTLKNFTEKRQEVNTSLQIKKQFSINLYPNENLTAATYSEIVKLEENEVPLVKEEFDNFSVYDGHNSDNYSDDDDKTLEELSQMINNQMNNYKKKRRKIEEHIEESEIKKEEQCYVEKELTNQEIEEERRSLQLREDYVNAVFRCERCILSFPNAEDLKDHINIKHELNGAQWKCPWCECTLGSQVAFNYHTTKHTKRYVCCVCGHAARRPDLEYNGLLENGANKNQTLETDGTESIKNDTPAFQCEFCDKSFRWKTSLRKHLETHRIETGQKRRPYCETCRLSFTTTSNLQKHVKTSSKHQIQLKLRKLKDDSTLPDKDKEHLKIEQIRCSVNSKRQVFPCAQCDRRFQWRGNLLRHLHSHRAKANGELVCEPCNRTFSSIATYNQHMKISRKHVSENDFKYMCSDCGKKFANKTRLKDHVDWEHLKNFVHKCPVCQKVFKSHTSLYLHKQVVHKKNNPDHLCDHCGKPFPNRAKLRNHIIALHTTEAPYACSTCNARFSWHSCLSRHVRRVHKAKPATGLQIGAEIVG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00844733;
- 90% Identity
- -
- 80% Identity
- -