Tabs032399.1
Basic Information
- Insect
- Tuta absoluta
- Gene Symbol
- -
- Assembly
- GCA_029230345.1
- Location
- CM055309.1:4675956-4685101[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00058 0.057 15.0 1.3 1 23 85 107 85 107 0.97 2 17 2.4 2.4e+02 3.6 2.0 2 23 112 134 112 134 0.94 3 17 0.014 1.4 10.6 1.1 2 21 141 160 140 161 0.95 4 17 0.0099 0.97 11.1 4.2 1 23 170 193 170 193 0.93 5 17 0.046 4.5 9.0 3.3 1 23 196 219 196 219 0.93 6 17 0.16 15 7.3 0.2 3 21 229 247 228 248 0.93 7 17 0.021 2.1 10.0 0.4 2 23 269 291 268 291 0.95 8 17 0.014 1.4 10.6 0.2 1 12 297 308 297 314 0.86 9 17 0.021 2.1 10.0 0.4 2 23 322 344 321 344 0.95 10 17 0.014 1.4 10.6 0.2 1 12 350 361 350 367 0.86 11 17 0.021 2.1 10.0 0.4 2 23 375 397 374 397 0.95 12 17 0.046 4.5 9.0 0.1 1 12 403 414 403 420 0.86 13 17 0.021 2.1 10.0 0.4 2 23 428 450 427 450 0.95 14 17 0.014 1.4 10.6 0.2 1 12 456 467 456 473 0.86 15 17 0.021 2.1 10.0 0.4 2 23 481 503 480 503 0.95 16 17 9.4e-05 0.0092 17.4 6.3 1 23 509 531 509 532 0.96 17 17 0.43 42 5.9 0.3 1 11 541 551 541 553 0.91
Sequence Information
- Coding Sequence
- ATGGAAAAGTTACGAAGAAAAGACAATGAAATAAAAGATATTTGCTTTGTGCTGCAAGaATATGAAGAGGAAGTGGACAGTAAATCTAAtctaaatctagataatattaaaatagaAGATGGATATTATAACCATGCGGATGATTTATATGATTTTGATGATGGTGAGGATGAGGCAATTAGTGGTGATGCACAAGATATGCCGAACGAAGAAATTGATAAAACACCACTTGTAACCTCTCAAAACCTTCAGTACATTTGCGACTACTGCACGTTATCGTTTAGAAAGAAAGTCCGATTAATGAATCATGTGAAACTACACCGTTACATCAGAAGTTGTAACTTCTGTGAATATAAGTGTGTGAGCGAGTTCCTCATGTACAAACATGTGGAGAGGGAGCACGAGATTTCACGGGCAGTTCAGTGTGTTCAATGTAAAGCTAACttcaaGAGGAAAAGAGATTTCTTCCAGCACTACCGCGACGACTACTACGAGTTCAACAACACATTTATTTGTGACTATTGCAACAAAAAGTGCAGAACTCGTCGCATGATTGAGAAGCACATATTCAATAACCACACGCCCCACACGTGTACGCAATGCTCGCTGACGTTCACAGAGCCGTGGCGTCTCACACACCACTACGCTCTAAAGCACAGCGTGTCGCGTACAGAGGCCGCGTACTGCGTGAAATGCGACCGACAGTTTGACAACGTGCCACAGTTTAGGTACCATCTCAACGCCTCTGTTGCTCACCGGGAGGAGAGGAAGCCACATAAGCTGTCCAAAAGCAAGCAGCCGGTGCAATGCCTGGCTTGTCCGCGAGTGTACTCGAAGCGCTACACAATGATGAACCATTACAACAAAGTACACGTCGGCAAGTCGCGCTACCAGTGCCACCACTGCAATAAGGTATACATTAATCTACTGCAGGTCCAAAAGTCCAAAAGCAAGCAGCCGGTGCAATGCCTGGCGTGCCCGCGAGTGTACTCGAAGCGCTACACAATGATGAACCATTACAACAAAGTACACGTCGGCAAGTCGCGCTACCAGTGCCACCACTGCAATAAGGTATACATTAATCTACTGCAGGTCCAAAAGTCCAAAAGTAAGCGGCCGGTGCAATGCCTGGCGTGCCCGCGAGTGTACTCGAAGCGCTACACAATGATGAACCATTACAACAAAGTACACGTCGGCAAGTCGCGCTACCAGTGCCCCCAGTGCAATAAGGTATACATTAATCTACTGCAGGTCCAAAAGTCCAAAAGTAAGCAGCCGGTGCAATGCCTGGCTTGTCCGCGAGTGTACTCGAAGCGCTACACCATGATGAACCATTACAACAAAGTACACGTCGGCAAGTCGCGCTACCAGTGCCACCACTGCAATAAGGTATACATTAATCTACTGCAGGTCCAAAAGTCCAAAAGTAAGCAGCCGGTGCAATGCCTGGCTTGTCCGCGAGTGTACTCGAAGCGCTACACCATGATGAACCATTACAACAAAGTACATGTCGGCAAGTCGCGCTACCAGTGCCAACACTGCAATAAGttattcGTGAATAACACAAAACTGAAGGACCACATAAGGTACCATCACGAAGGGCACGTCAGAGAGAGGAAGCACGTCTGCACTGTTTGCGGAAGAGGATTCACTGTAACTATCATTTGA
- Protein Sequence
- MEKLRRKDNEIKDICFVLQEYEEEVDSKSNLNLDNIKIEDGYYNHADDLYDFDDGEDEAISGDAQDMPNEEIDKTPLVTSQNLQYICDYCTLSFRKKVRLMNHVKLHRYIRSCNFCEYKCVSEFLMYKHVEREHEISRAVQCVQCKANFKRKRDFFQHYRDDYYEFNNTFICDYCNKKCRTRRMIEKHIFNNHTPHTCTQCSLTFTEPWRLTHHYALKHSVSRTEAAYCVKCDRQFDNVPQFRYHLNASVAHREERKPHKLSKSKQPVQCLACPRVYSKRYTMMNHYNKVHVGKSRYQCHHCNKVYINLLQVQKSKSKQPVQCLACPRVYSKRYTMMNHYNKVHVGKSRYQCHHCNKVYINLLQVQKSKSKRPVQCLACPRVYSKRYTMMNHYNKVHVGKSRYQCPQCNKVYINLLQVQKSKSKQPVQCLACPRVYSKRYTMMNHYNKVHVGKSRYQCHHCNKVYINLLQVQKSKSKQPVQCLACPRVYSKRYTMMNHYNKVHVGKSRYQCQHCNKLFVNNTKLKDHIRYHHEGHVRERKHVCTVCGRGFTVTII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -