Tabs033228.1
Basic Information
- Insect
- Tuta absoluta
- Gene Symbol
- -
- Assembly
- GCA_029230345.1
- Location
- CM055310.1:6361289-6363217[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.59 57 5.5 0.8 1 21 84 104 84 107 0.90 2 14 0.067 6.5 8.5 0.1 2 23 134 156 133 156 0.93 3 14 0.12 12 7.6 4.0 3 23 180 200 178 200 0.91 4 14 0.00018 0.017 16.6 2.0 1 23 204 226 204 226 0.97 5 14 0.012 1.2 10.8 1.1 1 23 323 346 323 346 0.90 6 14 0.058 5.7 8.7 0.1 2 23 372 394 371 394 0.96 7 14 1.1 1e+02 4.7 8.0 2 23 417 438 416 438 0.96 8 14 0.0071 0.69 11.5 0.0 1 23 442 464 442 464 0.98 9 14 0.077 7.5 8.3 2.4 2 23 470 492 469 492 0.85 10 14 0.078 7.6 8.3 0.6 2 23 500 522 499 522 0.93 11 14 0.00013 0.012 17.0 2.8 1 23 529 552 529 552 0.96 12 14 5.9e-06 0.00058 21.2 1.0 1 23 558 580 558 580 0.98 13 14 2e-06 0.00019 22.7 1.0 1 23 586 608 586 608 0.99 14 14 4.8e-05 0.0047 18.4 3.8 1 23 614 637 614 637 0.97
Sequence Information
- Coding Sequence
- ATGAGTTTAAACGAAGACTTAAATATTGCAACACAGAAactaaacaaacttaaaaatctGAGTGTTGTCAAAACAAGTAACATAAAAAAAGACGTCATACTTGAATCCACAGTGCAAGATTCTAACGAAAAACAGAAAGACGAGGTTATAAGCACTGAAGAATTTTCAATAAGGCAATATCGATTGGCTGTTAAAGTTATATTAGCTAATTCTAACGCGACTGCTATTAGCCACCATAATGGAAAAGGTTATAAATGTTGTTTCTGTGCTAACCAATACGCAGATCCCGCTGAGCTCAAACAACACAATTTAGACGTCCATATAAAAGATATCAACAGAATTGGTAATAAAGTGGACAGTAAGGCAAAACTAATGGTAAAATTAGATATAACTAAACTGACTTGTAATATATGCCAGCAAGAAATCGCTACTATAGATCAACTTATACAACACCTAAATGATAAACATAAAAAGAAAGTTTTGGTTGACATCAAAAAGTTTATACTTCCGTTCAAGTTTATCAATGATGAGCTGCGATGTATTTTCTGTACGAAAATATTTCACACATTCAAAATGCTTCAAACGCATATGAATTCACACTATTCAAACTACACTTGTGAATTGTGTTCGAAAGGTTTCGTAACGAGAACTTCTCTTATGAAACACAAATTTTCACATAGTCCGACTGAAACGGTAACACATGAGAAGGTCGATACGGTAAAACCGGAAGACGGTAAAAATAGGAAGAGTGAAAATATTTTGGCTTGCCATTGTCCATTGGGTAAACGAGATATTCAGACAAACTCTAACGCATCGGTGATAAATAAGAAAGTCGATACTATAAAACTGAGAGACAATAAAAATAGGAAGAACGAACATATTTTGGTTTACCATTGGCAATCGGGTATACGAGACATTCTATCAAACTCTAACGCAACCGTGATTGGTGGACACCAAGGAACAAGCTTTAAATGTGATTTCTGCACTGAGAACTTCTTTCTACCGTCCGATCTTAAACAGCACAACATTCAAATGCATGCCAAAGACATCTGCCACTTCagaaaatatcaaataaaatcaaaGATTTTCGCAAAATTGGACATCAGCGATCTGCGTTGCAACTTATGCGAGCAGGAAACATCTACCATTGCTGAACTTGTAGAGCACCTTAACAGTGATCACTATAAAGATATAAAACCGGAAATCGTGAAGTACATATTGCCTTTCAAGTTCAACGGCGATGAGTTGCGGTGTTGTGTTTGCTCTCAAATCTTCCATACGTTCAAAAGTCTACAATATCACATGCATTCACACTTTAGCAACTTCATTTGTAAGGTGTGCTCCGCTGGGTTTGTTGCGCGGAATGCTCTCGCATTGCACATCAAAACTCATGAAATAGGATCTGTTAAATGCTCTTACTGTTCCAAAACATTTAATCATCTGCGAGCTAAGAAATATCACGAGGAATATGTTCATACAACTGGAATACGGAAGAGCGTATGCAGAATTTGCAACGCACGCTTCAGAGATTATCGCCAAAAGAAAATCCATTTAGTACGCGTCCATGGCGTAGGATCGTTGGAATTCAAATGTCAATCGTGTGACAAAGTATTTGCAACAAGTTACGGGTTGCTGCACCACACTAACAACTTTCATCTGATGATGCGACCGCACCAGTGTCCCGTGTGTAGTAAGAGCTTCTACTCTCAACCGTTACTCAAAAACCACTTGTTGATACATACGGGAGAAAAGGAGTTTCAGTGTGACGTTTGCTCAAAGAGATTTGTAAGGAAGACGACTCTAGTCGAGCATATGAAGATTCATATGAACGATAGAAGACATAAGTGTGAGCTTTGTGGGCAGGCGTTTGTTCAGAAGTGCAGTTTGAAAGGACACATGCGGTCCAGACATGGGACACTggataaatga
- Protein Sequence
- MSLNEDLNIATQKLNKLKNLSVVKTSNIKKDVILESTVQDSNEKQKDEVISTEEFSIRQYRLAVKVILANSNATAISHHNGKGYKCCFCANQYADPAELKQHNLDVHIKDINRIGNKVDSKAKLMVKLDITKLTCNICQQEIATIDQLIQHLNDKHKKKVLVDIKKFILPFKFINDELRCIFCTKIFHTFKMLQTHMNSHYSNYTCELCSKGFVTRTSLMKHKFSHSPTETVTHEKVDTVKPEDGKNRKSENILACHCPLGKRDIQTNSNASVINKKVDTIKLRDNKNRKNEHILVYHWQSGIRDILSNSNATVIGGHQGTSFKCDFCTENFFLPSDLKQHNIQMHAKDICHFRKYQIKSKIFAKLDISDLRCNLCEQETSTIAELVEHLNSDHYKDIKPEIVKYILPFKFNGDELRCCVCSQIFHTFKSLQYHMHSHFSNFICKVCSAGFVARNALALHIKTHEIGSVKCSYCSKTFNHLRAKKYHEEYVHTTGIRKSVCRICNARFRDYRQKKIHLVRVHGVGSLEFKCQSCDKVFATSYGLLHHTNNFHLMMRPHQCPVCSKSFYSQPLLKNHLLIHTGEKEFQCDVCSKRFVRKTTLVEHMKIHMNDRRHKCELCGQAFVQKCSLKGHMRSRHGTLDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -