Tabs033225.1
Basic Information
- Insect
- Tuta absoluta
- Gene Symbol
- -
- Assembly
- GCA_029230345.1
- Location
- CM055310.1:6352611-6355032[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.055 5.4 8.7 0.2 1 23 96 119 96 119 0.95 2 14 1.7 1.7e+02 4.1 0.0 2 23 145 167 144 167 0.91 3 14 0.0041 0.4 12.3 4.9 1 23 192 214 192 214 0.98 4 14 0.0013 0.12 13.9 0.2 1 23 218 241 218 241 0.91 5 14 0.017 1.7 10.3 0.1 1 20 308 327 308 328 0.95 6 14 0.46 45 5.8 0.0 2 23 358 380 357 380 0.94 7 14 0.012 1.2 10.8 5.7 1 23 404 426 404 426 0.98 8 14 0.031 3.1 9.5 2.0 1 23 430 452 430 452 0.97 9 14 0.01 0.99 11.1 0.5 1 23 457 480 457 480 0.93 10 14 0.055 5.4 8.7 2.1 3 23 491 512 490 512 0.94 11 14 0.011 1.1 10.9 4.7 1 23 519 542 519 542 0.97 12 14 0.00017 0.017 16.6 1.8 1 23 548 570 548 570 0.98 13 14 1.1e-06 0.0001 23.6 0.9 1 23 578 600 578 600 0.99 14 14 1.1e-05 0.0011 20.3 2.3 1 23 606 629 606 629 0.97
Sequence Information
- Coding Sequence
- ATGTCACATTTACAAGGAACTCTGCTGGCTATTCCCTGTTCAACATCATCAAGGAAACGAACATCACGCAAGCAACCGAAAATTAGGTTTGTTGAGAGCATATCAGATAACGCACCACTGAGCACACTTATATCGGTGAAAAGAGAAAACCCAGACGAAGATACCTTAAAGAATGAAGGAAATACAGAAAGTTTAAAAGAGGCATTGCCCAGATGCCGCATGGCTGTGAGAGAAATACTGTATAACTCAAACGCTACGCCACTATACATCCGGACTCCTAATGGATTCAAGTGTTGGTTTTGCACAAATTTTTTACCGACCCCGGCAGACCTCAAGTCTCATATTATAGAGAACCATACCGGGGATATAATCAATTTCAAGAAGAAAGATTCTGCGGCAAGATTTTATGTAAAGTTGGATATAACGCAACTGCACTGCAATATATGCGAGGAAGAAATCGATACTATTGAACTGTTAATAGAGCATTTAAATGACGCGCatgataaaaatttatatcCTGATATCAAGAAGTACATATTTCCATTCAGATTTGACAGTGAAGACATTGATGAATTCAGATGTTGCTTATGcccaaaaatatttatgtcttttaAAATGCTTCAAGCGCACATGCATTCACATTATAAGAATTTCTTTTGCAACTTGTGTCCCGAAGCATTCGTCAATTACTATTCTCTTGAGCAACACAAATCTGCAGCTCACCCGAAATTTATCACTATAAAAAGTACGGCCGATAAAAGTACATCAAAAAGTGTGATCATCAAAAAAGAACCTGGAGATATCAATAATGAGGAAACAAGTAATATTTTCAAGATGCCAGGGAAGTATTTGAACTTAATCATGAAGAGGATTATGACGAATTCGAACGCAACTCCTATACGCTACCACAACGGGAGTACCTTCATGTGTTCGTTCTGTTCGGAGCAGTTTCCAAACCCAGCCGCCCTCAAACTACACACGACACCCAGCCACATCAAAAGATACTTCAACAGATTCATGGACAAGATTATAAGCGCGAAGTACTACGTCAAAATGGACATAACATACCTACAATGCAGTATTTGTACGCAAGACGCGGCTAACATCGAACAACTTATAGAACATCTCAATGAAGCTCATTTAGCTTCATCCAAAATATTGCCGGAGATCAGTAAACTGATATTTCCCTTTAAGTTTCCCAACCATGAATTCAAATGCTGCATATGCTCAAATGTTTTTGACAATTTCAAAACACTGACACAGCACATGCATGTCCATTACAGCAATTTTTTCTGTAGCTACTGTGCGGCTGGATTTATAACCAAAACTTGTCTTTATGTGCATGAAAGATCCCATTTGGCGGGACCATTCAAATGTACTCTATGTGACCAAGAGTTTAATACGGAGGTGAAAAAGAAGCGACACGAAGCCATtgctcatgaaactaaatacaTCAAAAACAGAAACATTTGCAGGATTTGCAATACGCGCTTCTCGGACTACCATAAGAAATATAGGCACATGGTGATAGACCACGGTATGAAGTCGCTAGCACACAAATGTAAGAGCTGTGACAAGGACTTTGCCACGAAATGTGCAATGCTGGCTCATGTGAAGCGGTTCCACCTGATGCTCAAGCCGCATAAATGTACGATGTGTGAGATGGCCTTCTTCTCTGTAGCCGAGCTGACCAAACATATGAATAAGCACACTGGGTTGATGCCAAAGCGATTCAAATGCGAACTTTGTCCGAAGGCGTTCATACGGATGTATACGTTGAAGGAGCACATGCGTTCCCATTTAAACGACAGACGTTTCAAGTGTGACGTCTGCGGTCAGGCGTTTGTTCAGCGCTGCAGTTTGAAAAGTCACATGATGAATAAGCACGATGCTTTATTCAACTCATCATCAGCATCATATCACCCTACACCTTCCCCCTGCTGA
- Protein Sequence
- MSHLQGTLLAIPCSTSSRKRTSRKQPKIRFVESISDNAPLSTLISVKRENPDEDTLKNEGNTESLKEALPRCRMAVREILYNSNATPLYIRTPNGFKCWFCTNFLPTPADLKSHIIENHTGDIINFKKKDSAARFYVKLDITQLHCNICEEEIDTIELLIEHLNDAHDKNLYPDIKKYIFPFRFDSEDIDEFRCCLCPKIFMSFKMLQAHMHSHYKNFFCNLCPEAFVNYYSLEQHKSAAHPKFITIKSTADKSTSKSVIIKKEPGDINNEETSNIFKMPGKYLNLIMKRIMTNSNATPIRYHNGSTFMCSFCSEQFPNPAALKLHTTPSHIKRYFNRFMDKIISAKYYVKMDITYLQCSICTQDAANIEQLIEHLNEAHLASSKILPEISKLIFPFKFPNHEFKCCICSNVFDNFKTLTQHMHVHYSNFFCSYCAAGFITKTCLYVHERSHLAGPFKCTLCDQEFNTEVKKKRHEAIAHETKYIKNRNICRICNTRFSDYHKKYRHMVIDHGMKSLAHKCKSCDKDFATKCAMLAHVKRFHLMLKPHKCTMCEMAFFSVAELTKHMNKHTGLMPKRFKCELCPKAFIRMYTLKEHMRSHLNDRRFKCDVCGQAFVQRCSLKSHMMNKHDALFNSSSASYHPTPSPC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00844690;
- 90% Identity
- iTF_00844690;
- 80% Identity
- -