Tabs032491.1
Basic Information
- Insect
- Tuta absoluta
- Gene Symbol
- -
- Assembly
- GCA_029230345.1
- Location
- CM055309.1:5959026-5986389[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0014 0.13 13.8 3.0 1 23 242 264 242 265 0.96 2 15 0.031 3.1 9.5 0.9 1 23 271 294 271 294 0.92 3 15 1.5 1.5e+02 4.2 1.1 1 23 298 320 298 320 0.95 4 15 0.0055 0.54 11.9 0.5 1 23 325 348 325 348 0.97 5 15 0.00095 0.092 14.3 0.5 1 23 352 375 352 375 0.96 6 15 0.023 2.2 9.9 0.0 1 20 388 407 388 409 0.95 7 15 0.039 3.8 9.2 0.2 3 23 422 442 421 442 0.94 8 15 0.0029 0.28 12.8 0.5 1 23 449 472 449 472 0.96 9 15 0.58 57 5.5 0.3 2 15 489 502 489 505 0.84 10 15 0.58 57 5.5 0.3 2 15 538 551 538 554 0.84 11 15 6.2 6e+02 2.3 3.7 2 13 611 622 611 624 0.87 12 15 1.9e-05 0.0018 19.7 1.9 2 23 673 694 673 694 0.97 13 15 5.9e-05 0.0058 18.1 1.2 1 23 700 722 700 722 0.99 14 15 8.2e-07 8e-05 23.9 4.7 2 23 729 750 728 750 0.97 15 15 2.5e-06 0.00024 22.4 2.4 1 23 756 779 756 779 0.98
Sequence Information
- Coding Sequence
- ATGGAACATATATCGGCATGTCGGGCGTGTCTTGCTACAGAAGCAAAACTTTACAATATGGTCAAATATGAACTTATAACGGCGTATCAAAATCTTACTGGATTGCAGATGTCACAAGTAGACGGGCGGCCGCAGCAGATCTGCAGCTACTGCGCTGCACTGCTGCTCAAATGTGCAGCGTTCCGGCAGAAGTGCATTAATGCACAAGAGCTACTTACATATGCCATAGTTGAGGAACATCAGATAACATCGGAATATATCCACAGTATAGACCGTCAGTCCCACAACCTAACCTTACCGTACACAACCATTCACAACTCCGTTACAATCAAACAGGAAGAGTTGACGTTAGACAACGATCTGACGTCTCTACTGAACAATATAATTGAGCAGAACGATGTTAAAGTGGAGGAAAGCAGTGATGAGGAACCATTGGTCAAGTTtgtcaagaagaagaagaggaaaaAGAAACATGATATTAAAGCCACACCAACACTACCAGAGTTAGCCCAAGACATGAAACCATCCGTGATAAAAACCGAACTTGAGGATTTACCGTTAGATTTCGATGACTGTTTTGACAACAACGATGACCAGTTTGATGATGTTGATGCAAAGCCGGTGGCCTGTGACTACGATGTTGAGGTTGTTGTTTTGAGCAAGGAAGAACAAATACTGGAGTTACAAGCTAGAAAAAACACACTGAACTACAAAAACTCGTTCTACAAATGCGAGATGTGCTACAAAGGGTTCATGGTGGAAAGTACATACCGGAACCACATGGAGAGACACCATCCTTCGTTCGGTCGTTTCTCGTGTGACATCTGCCAACTTCGTTTTCCGAATAACCGCACACAACAACAACACAAGCTAGCGACGCACTCCAGGAACTATATTTGTAGGATTTGCGGACATATAAGTAAAGCAAAgagcAGAGCCAAAGAGCATTACAAATGGCACCAGGGAGTGTTATACGTCTGTGATATTTGTGGAGCGTCATTCGATAAACCAACGAGTCACCTCACACACGTCCGCACAAACCATCCGTCCCGACACATATGTTCGCTATGTGGCGCATCATTCGTCAGCGCGCACGGTTTGCTCACGCATGGAAGGAGGGCGCATAGGCAACTTAATGAGGGCCAAGAACCGAATCCGGCTTATAAGTGTGTCTTCTGTGGCGTTCAGTTCAGTAGTGAAGAGGCGGTCGCTAAACATATCAGTTTAACGGAGAATGAAATATGTGATCCTACACTCAGGCCGTGCGTCTTTTGCGGCGAGAGTTTCCTAAACGAAGACTTATTGAAGAAACATGTGACACAGCACCAAGGAGATGAGAAAACGTATGAGTGTATTGAATGCAACAAGACGTTCTCAAGTGCGCGGTACCAGGCGGCGCATTACCGCCGTgtgcacgcgcgtgcaaccaGCAAGCCTGCACGCAGCCCCGCGCTCCCCAACGCCGTCTGCGAGATATGCGGCAAGAAGTGCACGGTGAGTGCCAACgctgcacgcgcgtgcaaccagcaagcctgcacgcgcgtgcaaccagcaagcctgcacgcgcgtgcaaccaGCAAGCCTGCACGCAGCCCCGCGCTCTCCAACGCCGTCTGCGAGATATGCGGCAAGAAGTGCACGGTGAGTGCCAACgctgcacgcgcgtgcaaccaGCAAGCCTGCACGCAGCCCCGCGCTCTCCAACGCCGTCTGCGAGATATGCGGCAAGAAGTGCACGGTGAGTGCCAACgctgcacgcgcgtgcaaccagcaagcctgcacgcgcgtgcaaccaGCAAGCCTGCACGCAGCCCCGCGCTCTCCAACGCCGTCTGCGAGATATGCGGCAAGAAGTGCACGCAAGCCTGCACGCAGCCCCGCGCTCCCCAACGCCGTCTGCGAGATATGCGGCAAGAAGTGCACGGTGAGTGCCAACgctgcacgcgcgtgcaaccagcaagcctgcacgcgcgtgcaaccaGCAAGCCTGCACGCAGCCCCGCGCTCTCCAACGCCGTCTGCGAGATATGCGGCAAGAAGTGCACGTCGAAAGCTACGCTGGTGTACCACCAGAGGACCCACTCCGGggagaagccctaccagtgcaccgAGTGTCCGAAACGATTCAGCATACTGCAGCGGTTGCagATCCACACCCGCACACACACGGGCGAGCGGCCGTGCCAGTGCCCGCACTGCCCCAAGGCCTTCAAACACAAGGCCGCCTTGAACAGACATCTCAGAGTCCACACAGGGGTGAAGCCGTACCAATGCACTCACTGCGGCAAATCCTTCTCACAATCAAACAGTATGAAAGGGCACGTGAGGAGTGTTCACCTCAAACTACCCGCGCTGTACCGCCGCGCGGGGAAGCGCGGGGAATACAGTGAAtag
- Protein Sequence
- MEHISACRACLATEAKLYNMVKYELITAYQNLTGLQMSQVDGRPQQICSYCAALLLKCAAFRQKCINAQELLTYAIVEEHQITSEYIHSIDRQSHNLTLPYTTIHNSVTIKQEELTLDNDLTSLLNNIIEQNDVKVEESSDEEPLVKFVKKKKRKKKHDIKATPTLPELAQDMKPSVIKTELEDLPLDFDDCFDNNDDQFDDVDAKPVACDYDVEVVVLSKEEQILELQARKNTLNYKNSFYKCEMCYKGFMVESTYRNHMERHHPSFGRFSCDICQLRFPNNRTQQQHKLATHSRNYICRICGHISKAKSRAKEHYKWHQGVLYVCDICGASFDKPTSHLTHVRTNHPSRHICSLCGASFVSAHGLLTHGRRAHRQLNEGQEPNPAYKCVFCGVQFSSEEAVAKHISLTENEICDPTLRPCVFCGESFLNEDLLKKHVTQHQGDEKTYECIECNKTFSSARYQAAHYRRVHARATSKPARSPALPNAVCEICGKKCTVSANAARACNQQACTRVQPASLHARATSKPARSPALSNAVCEICGKKCTVSANAARACNQQACTQPRALQRRLRDMRQEVHGECQRCTRVQPASLHARATSKPARSPALSNAVCEICGKKCTQACTQPRAPQRRLRDMRQEVHGECQRCTRVQPASLHARATSKPARSPALSNAVCEICGKKCTSKATLVYHQRTHSGEKPYQCTECPKRFSILQRLQIHTRTHTGERPCQCPHCPKAFKHKAALNRHLRVHTGVKPYQCTHCGKSFSQSNSMKGHVRSVHLKLPALYRRAGKRGEYSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -