Tabs033067.1
Basic Information
- Insect
- Tuta absoluta
- Gene Symbol
- -
- Assembly
- GCA_029230345.1
- Location
- CM055310.1:3889013-3892136[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 7.9 7.7e+02 2.0 0.1 3 22 26 45 25 47 0.79 2 20 0.0052 0.5 12.0 1.8 3 23 120 140 119 140 0.98 3 20 0.67 65 5.3 2.9 1 21 144 164 144 167 0.95 4 20 0.07 6.9 8.4 0.7 1 21 171 191 171 192 0.93 5 20 0.69 68 5.3 0.3 1 23 199 222 199 222 0.88 6 20 0.00015 0.015 16.8 1.0 1 23 229 252 229 252 0.96 7 20 0.14 14 7.4 3.9 1 23 257 279 257 279 0.97 8 20 0.00012 0.012 17.1 0.6 1 20 285 304 285 307 0.94 9 20 2.3e-05 0.0022 19.4 3.2 1 23 313 336 313 336 0.95 10 20 0.017 1.7 10.4 0.3 3 23 403 424 402 424 0.96 11 20 0.56 55 5.6 0.2 2 23 449 471 448 471 0.90 12 20 0.39 38 6.1 0.1 3 23 496 516 494 516 0.94 13 20 0.00046 0.044 15.3 1.5 1 21 520 540 520 541 0.96 14 20 0.23 22 6.8 2.0 1 23 582 605 582 605 0.97 15 20 0.011 1 11.0 0.5 2 23 631 653 630 653 0.95 16 20 0.02 1.9 10.1 0.6 2 23 676 697 675 697 0.95 17 20 0.00028 0.027 16.0 0.0 1 23 701 724 701 724 0.97 18 20 0.77 75 5.1 2.1 1 23 728 751 728 751 0.97 19 20 0.00034 0.033 15.7 2.8 1 23 790 813 790 813 0.97 20 20 0.00093 0.091 14.3 0.9 1 23 823 846 823 846 0.95
Sequence Information
- Coding Sequence
- ATGCAGAACGCCGAAATCGTGTTACAATATTCCACGGCGTATCCCTTCCGGTTGAAAGGTGTCAGCACTATTCTTTGCGTCTACTGTATGGACGAATTCAAAGACCCTGACGAGTTCAGGCAACATGTTGATGACGAACATAAAGAATTCAAAGTGAGCAACGCAGTCAGGCATTCTAAAACAATGGGTTACCTTAAAGCTGATTGCACCAACCTTAGTTGTAGGTTGTGCTCCGCCCCGGCTGAAACTATAGAAGAAATCGCGGAGCATCTCTATAGGGACCATTACCTTATAGAACTGCAACTAGAGCAGGAGCTCGGTATCCATCCGTATAAGTTACAAATGGATAAATGGCTTTGTGCTGTCTGTGACAAAAAATGTGCGTCAATCTATAGTCTTACTCGACACACAACCACACATTTCTCGAAACATACTTGCGACATTTGCGCAAAAAGTTATCTCACAAATATGGCTCTGAAATACCATATCAGATGTACTCACGCCAAAAACCATACATGCAGAAAGTGCTGGAAAGAATTCGAAAGTAAAGAAGAAAAGGCAGAGCATATAAAAAACTCGAAACGTTGCCAGCCTTTCATGTGTGTGACATGCGGCGAAAGATTCTTATCTTGGGAACTTAAAGAAAAGCATAGGACAGAGATTCACGGACAGTCAAAGAGGGCTTATCAATGTCCAGACTGTGACCAAGTGTTTGGCACACGTAGAATGTTCTACACGCATTACAAGCTGGAACATACAGACGATTGCTACGTTTGCTCCTGCTGTGGCATGAAATTTGAGAGGAAGCATCGATTGGATGAACACCTCAGAGGTCACACAGGAGAGAAAATGTTCAGTTGTGAGGTCTGTGAGAAGAAATTTTCATTGAAAAAGAATCTCATACAGCATATGTGGATTCACAGCGAAACTAAGAGGTTTCTGTGTCACCTTTGCGATAAGCAGTTTGCTCAAAAAGTTAGTTTGAAGACTCATATGAAATCGTATCACCCTTCCGAAGAAAATTACACTTTAATATCCCAAGCGAATGTCGAAGGGCGCATCTTGGATATCCAAGGCCGTAGAGACAGTGAaagcgaaaaaaagaaaattgtccTTGTCTACCAGACTCCTCAGAGACGTAACGCGGAAATGATCCTCACATTCTCAACAGCTTATCCGTTCAAAACTCGGTTTAGCCAAATCCTATGCGCTTACTGTCACGAAGAGTTCGAACAACTCTCCGTATTACGCGGCCATATGAAAGCGGAACACATGACGTCCGACTTCAAAAATGTTTTCTATCGAGCTAAAGACAATTTAGTCAAAGTAGACATTACAGAGCTAAAATGTAAAATTTGTAACCAAGATATCGTTGACATAGACACTCTTATGAATCATTTTTCTAATGATCATGGAAAACCTGTTAAATTTTATGCTCGGTTCGGAGTATTGCCTTACAAGCAAAATTCTGATAACCATTGGATATGTGTTTACTGCCCCAAAGTATATCTTGAGTTTGTACAGTTCAAACGCCATTTAGCTAGTCATTTCATGGAATATACCTGTGATAAATGTGGAACAACTTTCGTTTCAGACCATGCTTTAAAAGATCACCATAGGCAAGTCAAATGCTTTAGGACAGCGTATAAACCTAGAAATGGGAAGGTACTGCGACCTAGGACAAATGCGGAGATAGTTCTTCAATGTTCTTCAGCAATACCGTTTAGAAcgtggaaaaataattttagttgCGTTTTTTGTCGATTGCAAACAAATGATCCTTGCATGCTTAGGAGCCATATGGCTACTCGTCATGCAAACTATGATGTACAGGCAGCattttacaaaaaacttgggaaGGAATTTCTTAAAATTGATATTACCGATCTGCAATGCAAAATCTGCTTCATGGTCATCGAAAGATTTGACAACCTCACTACACATTTGAAAAACGATCATCAACAACCATTATCTGACGATCAACTAGGTGTATTGCCCTTTAGATTAAACGACGCTTCTATTTGGAAATGCACTTTATGTCCGAATGAGTTCAAAGATTTCATTTCGTTGAAGAATCACACATCCGAGCATTTCCAGAATTACGTATGCGATACTTGCGGCGAAGGATTCATTACGGAATCCGCAATGATAGCGCATACTAAAGTTCCACACGAAAACAAGTACAACTGCAGCCGGTGTATAGCGACGTTCTCCTCTCTAGACGAAAGAAATCATCACGTCAAAACCCAGCATACGAGCACGCCGTATCTATGCATTTACTGCAAAGACAAACCTCGCTTTGCCAATTGGGAATTGAGGAAAAAGCATTTGATGGAAGTGCATAACTATAAGACTGGGGCAGACAAATACGAATGTACGACGTGTCAAAAGACTTTTAAGACAAGATCCGGGAAGTACAATCACATGGCGCGAACGCATCGTGTGAAGAAAGACTCAGAATTAAATTACCCGTGCAATTTTTGCCCTAAAGCATTTACTACTAAACTGTTCTTAGATAAACACGTTGCTAAGAAGCATTTTGATGTGTGA
- Protein Sequence
- MQNAEIVLQYSTAYPFRLKGVSTILCVYCMDEFKDPDEFRQHVDDEHKEFKVSNAVRHSKTMGYLKADCTNLSCRLCSAPAETIEEIAEHLYRDHYLIELQLEQELGIHPYKLQMDKWLCAVCDKKCASIYSLTRHTTTHFSKHTCDICAKSYLTNMALKYHIRCTHAKNHTCRKCWKEFESKEEKAEHIKNSKRCQPFMCVTCGERFLSWELKEKHRTEIHGQSKRAYQCPDCDQVFGTRRMFYTHYKLEHTDDCYVCSCCGMKFERKHRLDEHLRGHTGEKMFSCEVCEKKFSLKKNLIQHMWIHSETKRFLCHLCDKQFAQKVSLKTHMKSYHPSEENYTLISQANVEGRILDIQGRRDSESEKKKIVLVYQTPQRRNAEMILTFSTAYPFKTRFSQILCAYCHEEFEQLSVLRGHMKAEHMTSDFKNVFYRAKDNLVKVDITELKCKICNQDIVDIDTLMNHFSNDHGKPVKFYARFGVLPYKQNSDNHWICVYCPKVYLEFVQFKRHLASHFMEYTCDKCGTTFVSDHALKDHHRQVKCFRTAYKPRNGKVLRPRTNAEIVLQCSSAIPFRTWKNNFSCVFCRLQTNDPCMLRSHMATRHANYDVQAAFYKKLGKEFLKIDITDLQCKICFMVIERFDNLTTHLKNDHQQPLSDDQLGVLPFRLNDASIWKCTLCPNEFKDFISLKNHTSEHFQNYVCDTCGEGFITESAMIAHTKVPHENKYNCSRCIATFSSLDERNHHVKTQHTSTPYLCIYCKDKPRFANWELRKKHLMEVHNYKTGADKYECTTCQKTFKTRSGKYNHMARTHRVKKDSELNYPCNFCPKAFTTKLFLDKHVAKKHFDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -