Basic Information

Insect: Tuta absoluta
Gene Symbol: -
Assembly: GCA_029230345.1
Location: CM055307.1:7280529-7283804[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 2.4 2.4e+02 3.6 3.8 2 23 227 249 224 249 0.89

2 10 0.00034 0.034 15.7 1.1 1 23 255 277 255 277 0.99

3 10 5.8e-06 0.00056 21.3 3.5 1 23 283 306 283 306 0.97

4 10 0.026 2.5 9.8 0.0 2 21 313 332 312 333 0.93

5 10 9.1e-07 8.9e-05 23.8 1.3 2 23 353 374 352 374 0.96

6 10 1.8e-06 0.00017 22.9 1.9 1 23 381 403 381 403 0.97

7 10 0.00012 0.012 17.1 0.2 1 23 409 431 409 431 0.97

8 10 7.9e-06 0.00077 20.8 2.1 1 23 437 459 437 459 0.96

9 10 4.8e-05 0.0047 18.4 2.1 1 23 465 487 465 487 0.98

10 10 1.1e-05 0.0011 20.4 4.2 1 23 493 516 493 516 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	2.4	2.4e+02	3.6	3.8	2	23	227	249	224	249	0.89
2	10	0.00034	0.034	15.7	1.1	1	23	255	277	255	277	0.99
3	10	5.8e-06	0.00056	21.3	3.5	1	23	283	306	283	306	0.97
4	10	0.026	2.5	9.8	0.0	2	21	313	332	312	333	0.93
5	10	9.1e-07	8.9e-05	23.8	1.3	2	23	353	374	352	374	0.96
6	10	1.8e-06	0.00017	22.9	1.9	1	23	381	403	381	403	0.97
7	10	0.00012	0.012	17.1	0.2	1	23	409	431	409	431	0.97
8	10	7.9e-06	0.00077	20.8	2.1	1	23	437	459	437	459	0.96
9	10	4.8e-05	0.0047	18.4	2.1	1	23	465	487	465	487	0.98
10	10	1.1e-05	0.0011	20.4	4.2	1	23	493	516	493	516	0.98

Sequence Information

Coding Sequence: ATGGAGAACTCTGAAGAATCCTACTGCAGACTTTGCGCGGAACCAACACCCAAGGAACAGCTAATATCAGCCGATGAAGATGTCGCGGTGTCCTCGAAGATTGCAACAAAAATGCGTTGGATAAACATTGATATTACAAGCAATAACTACTTACCGAGCACAATATGTTTCTCCTGTTTCGATTTACTAGAACGCACTTGGTCCTTCCTGCATAATGTCAGAACTGCACAAGAGAAACTATGCGAGATTTTCGCGAGTAAAAATGACACTAAAAATGGTGAAACTTCGAGTTGTGTCAAACTGAATGATACGAAAAATGCTGGGAAACCTGTGGACAAAGACTGGCAACCGTTTGAAGATGCTAAGATGGAgATTAAAATTGACCCAGAGGGGAATTCAGAACTATTGACAACAGTGGACCCTAATTATTTACTCAATTTGCAAATAAAAAGAGAAGATGATTCAGACAACGGCCTACCAGCCAACCATACGGACGGATTCAACACAACAGACTCAGACATGCCTCTACAGTGTacagttaaaagaaaaaagttaaagaaaaagaaaaaaattaaatatgatcCCGAAATAACCGCTGAAGACTTGTTAAAAACTGAAGTTGACGCAGAACCGTTAGATATATCTGCATTGAATATGACTTGGGAGGACTACATGTGCCGGTGTGCAAAGTGTGACGccttatgtaaaaatatttcatcattaAGATTGCACgctttacacatacacacaagaTGTTGCACATTCAAATGCTCGGATTGTGGCAAAGTCAtggtaaattttaaaacatttgtcAATCATGTACGTACACACAAAAGCATTTTACGTTATTGCTGTGAATATTGCAACAAACAGTTTAGTTTACCATCTTATTTGAAGAAACATTTAAATACTGTACATAGTAATGCTGCACTTATGACGTGTCAAAACTGCGGCGCCTACTTCGACACTGAAGAACTTCTGCAAGACCATTTGATAATTTACTCTAGgagaaataagaaaataaggaaaaaagaaaaacttgaAGAAATGGATTTGAAATGCGACATATGCAACAAAGAATTCAAATCGCGTAGTAATTTGCAACAACATAAATTAGTTCACACGGAACGTGCCAGGGAATTTGCTTGTCATGTTTGCGGTAAAATGTTCTTTACAAAAGGAACTTTAAGCACACATATGATCACCCATGAAGACACAAAACCGTTTAAGTGTGAATTTTGCCCGCTAGCATTTCGTGCTCGAGGCAACCTCCAATCCCACATTAGTCTCCACTCCGGAGCTAAACCTTTCGTCTGTGAGCAGTGCGGCAAGTCTTTTAGAGTGAAACGTCATTTGAAATCCCACTCAATCGTTCACACAGACTTAATGCCTTACATTTGTGAGTATTGTAACAAACCGTTCCGCTTTAAAACCCGtcttaacttacatttaagACAGCACACGGGTGCCAAACCGTATAGTTGTACGTATTGTCAAAGAGATTTTACGAATGGATCGAATTTCAAAAAGCATATGAAGAGAAGGCACGGTGTAGATACCTCCAAGAAACGGTACAATAATATTGTCGATGATAATATAGTTGGTGGTACAGAAATTTGTGAAGATCAAAGTGAACCGTTATAA
Protein Sequence: MENSEESYCRLCAEPTPKEQLISADEDVAVSSKIATKMRWINIDITSNNYLPSTICFSCFDLLERTWSFLHNVRTAQEKLCEIFASKNDTKNGETSSCVKLNDTKNAGKPVDKDWQPFEDAKMEIKIDPEGNSELLTTVDPNYLLNLQIKREDDSDNGLPANHTDGFNTTDSDMPLQCTVKRKKLKKKKKIKYDPEITAEDLLKTEVDAEPLDISALNMTWEDYMCRCAKCDALCKNISSLRLHALHIHTRCCTFKCSDCGKVMVNFKTFVNHVRTHKSILRYCCEYCNKQFSLPSYLKKHLNTVHSNAALMTCQNCGAYFDTEELLQDHLIIYSRRNKKIRKKEKLEEMDLKCDICNKEFKSRSNLQQHKLVHTERAREFACHVCGKMFFTKGTLSTHMITHEDTKPFKCEFCPLAFRARGNLQSHISLHSGAKPFVCEQCGKSFRVKRHLKSHSIVHTDLMPYICEYCNKPFRFKTRLNLHLRQHTGAKPYSCTYCQRDFTNGSNFKKHMKRRHGVDTSKKRYNNIVDDNIVGGTEICEDQSEPL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00844646;
90% Identity: iTF_00844646;
80% Identity: -