Tabs014765.2
Basic Information
- Insect
- Tuta absoluta
- Gene Symbol
- zfy1
- Assembly
- GCA_029230345.1
- Location
- CM055292.1:3035333-3046115[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.9 1.9e+02 3.9 3.4 1 17 6 22 6 23 0.90 2 13 1.6e-06 0.00016 23.0 2.0 2 23 133 154 132 154 0.97 3 13 1.6e-06 0.00016 23.0 2.0 2 23 175 196 174 196 0.97 4 13 3.8e-05 0.0037 18.7 2.6 1 23 202 224 202 224 0.99 5 13 0.0018 0.17 13.4 8.0 2 23 231 252 230 253 0.94 6 13 0.56 54 5.6 2.0 5 23 266 284 264 284 0.97 7 13 0.0013 0.13 13.8 4.5 3 23 291 312 289 312 0.93 8 13 0.0007 0.068 14.7 0.3 2 23 329 349 328 349 0.97 9 13 0.0013 0.13 13.9 0.6 3 20 357 374 355 377 0.85 10 13 0.00035 0.034 15.7 0.4 1 23 385 407 385 407 0.98 11 13 0.0019 0.19 13.3 7.2 1 23 413 435 413 435 0.98 12 13 2.2e-06 0.00021 22.6 1.3 1 23 441 465 441 465 0.98 13 13 0.00032 0.031 15.8 5.5 1 23 471 493 471 494 0.96
Sequence Information
- Coding Sequence
- ATGTGGTGTGATGTTTACACTTGCACTCAATGCGGTGCTAAATGCACCTCTCTTAAGAAGCTTTGTGCGCTAATGTCCCTGGGCTACGCCATTCCCACCAGCCCTAAAGCTACCTACAGCAGGATGGTCACCGCTCGCACCATCAAGAAGGAAGAGAAGCAAGAGGATGTGCTTTCAGGAATGGCAGCAGGCACCCTCCTGTCACTTGACAACAAGGAATGCGTGCAGGCGAGCATGCTGTCAGTTTACGAAGCGATGTCGGAGGCCAAGCCGCAGCTGGAGACCCTCATCAAGCAGGAGACGAAGCGCCGGCGCAAGGACTACGTGTGTCCCGTGTGTAAGGAGGACCAAGGCTCGGAGGCAGGGATTCTTGCCCACCGCGAGCTACATCCGCTGGAGTGTCTGACGTGCGGCAAGTGCTTCCGGCGCCGCGCCAACCTCGCGCTTCATCTCAAGACGCATTACGGCGTCAAGAATTACAAGCGACCATGTGTTGCAAAGAGATTGAAACTACACCCGCTGGAGTGTCTGACGTGTGGCAAGTGCTTCCGGCGCCGCGCCAACCTCGCGCTGCACCTCAAGACGCATTACGGTATCAAGAATTACAAATGCGAAGTGTGCGAGAAGCGTTTCATAACGCGTCAGAAGCTAGCCGAGCATCACAACACGCACACCGGCCGCGCGCCCATCAAGTGCACGCACTGTGACCACACGTTCCGCAGATACAGCAACATGGTGCAGCACAGGGACCGCCACCACTTCCACAAGAAAACCAAAGTCCGCGATTTCGTCTGCCACTGCGGCGCCATTTTCCATTCACGAGCTAAACTACTATGGCATAAAGAAACACATGAAGATAAGCCGAAATGCTGCCTCTACTGCAGCGAGAAGTTCGTCCATGCCGCCTCGCTCACGCGGCACGTGCGACGCAAGCACAACGAGTACTACGTGCCCGAAGCGAGCACGCGCAAGCAGGAGAACGTCACTTGCCCCGTCTGCAACCAGGTGTACTTGCGCTCGAATCTGCGCACGCACCTGCTCACCCACAGCGGCAAGCGCCCCTACCTCTGCATCATCTGCAACAAAGCCTTCACCACCAAGTGGAACCTCAAGCTTCATCGCTGGACCCACATGAGCCGCTCCGCCAAACCTTACAAGTGCTCCCTGTGCAAGGGCGCCTTCATCCGACAAACGGAGTACATCTCACACATGAACGCGCACAAATCTGTCCGCCCGTACACGTGCAACTACTGCGGCTGTCAGTTCATCAGGAAGTACAACTGTCAACGGCACGTCCGCGAGCACGAGATGGCGAAGAAGTACGTGTGCAAGGTGCCGGAATGCGGTAAGTCGTTCCACAGGAGTTACTATTTGTCGGAGCATATGAAGGTGCACAGTGGCGCGCGACCGTTCTCTTGTTCGATTTGCGGCAAAACTTCCAGCAATAAGTCGAATCATAACAAGCATTTGAAGATCCACCACGCGCGGGAACCCATCGCGACTGAAGCATAA
- Protein Sequence
- MWCDVYTCTQCGAKCTSLKKLCALMSLGYAIPTSPKATYSRMVTARTIKKEEKQEDVLSGMAAGTLLSLDNKECVQASMLSVYEAMSEAKPQLETLIKQETKRRRKDYVCPVCKEDQGSEAGILAHRELHPLECLTCGKCFRRRANLALHLKTHYGVKNYKRPCVAKRLKLHPLECLTCGKCFRRRANLALHLKTHYGIKNYKCEVCEKRFITRQKLAEHHNTHTGRAPIKCTHCDHTFRRYSNMVQHRDRHHFHKKTKVRDFVCHCGAIFHSRAKLLWHKETHEDKPKCCLYCSEKFVHAASLTRHVRRKHNEYYVPEASTRKQENVTCPVCNQVYLRSNLRTHLLTHSGKRPYLCIICNKAFTTKWNLKLHRWTHMSRSAKPYKCSLCKGAFIRQTEYISHMNAHKSVRPYTCNYCGCQFIRKYNCQRHVREHEMAKKYVCKVPECGKSFHRSYYLSEHMKVHSGARPFSCSICGKTSSNKSNHNKHLKIHHAREPIATEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -