Basic Information

Insect: Tuta absoluta
Gene Symbol: -
Assembly: GCA_029230345.1
Location: CM055282.1:30632564-30644225[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 3.4 3.3e+02 3.1 0.8 2 18 54 70 53 70 0.87

2 10 7.6e-05 0.0075 17.7 3.6 1 20 217 236 217 239 0.94

3 10 2.6e-05 0.0025 19.2 0.4 1 23 245 267 245 267 0.99

4 10 1.8e-06 0.00018 22.8 1.7 1 23 273 295 273 295 0.98

5 10 6.4e-07 6.2e-05 24.3 1.1 1 23 301 323 301 323 0.99

6 10 1.1e-05 0.0011 20.3 0.1 1 23 329 351 329 351 0.95

7 10 7.2e-07 7e-05 24.1 0.8 1 23 357 379 357 379 0.98

8 10 4.5e-05 0.0044 18.4 3.3 1 23 385 407 385 407 0.99

9 10 0.00039 0.038 15.5 0.5 5 23 416 434 415 434 0.94

10 10 8.8e-06 0.00086 20.7 5.5 1 23 440 463 440 463 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	3.4	3.3e+02	3.1	0.8	2	18	54	70	53	70	0.87
2	10	7.6e-05	0.0075	17.7	3.6	1	20	217	236	217	239	0.94
3	10	2.6e-05	0.0025	19.2	0.4	1	23	245	267	245	267	0.99
4	10	1.8e-06	0.00018	22.8	1.7	1	23	273	295	273	295	0.98
5	10	6.4e-07	6.2e-05	24.3	1.1	1	23	301	323	301	323	0.99
6	10	1.1e-05	0.0011	20.3	0.1	1	23	329	351	329	351	0.95
7	10	7.2e-07	7e-05	24.1	0.8	1	23	357	379	357	379	0.98
8	10	4.5e-05	0.0044	18.4	3.3	1	23	385	407	385	407	0.99
9	10	0.00039	0.038	15.5	0.5	5	23	416	434	415	434	0.94
10	10	8.8e-06	0.00086	20.7	5.5	1	23	440	463	440	463	0.97

Sequence Information

Coding Sequence: ATGGACTTATCAAGAATCTGTCGATTATGCCTTGAAATGCACACTCAAACATATGATATTTTTactcaatattatgtaaaaagaAACTGTTTCTACTCAGATATGTTGTCGCAATGCACTAAATTAAAAcCATGCCTGGGCGATGGTCTTCCAAGGCTTATCTGTAAGGAATGCAGTCGTCATCTCAAGAGAACCTACTCTTTTAATAAACAATGTGAAGAGAGTGACCAAAAACTTCGTCTTCAAATAGAGAGTGGAACTCACATTGTCAACATAACAAAAGTTGACACAAGTGAAGTAAATGATGTAACAAATTCAGAACAGCAAGAAATGAAATTTGAACAACAAGTAGAAGTGAAAGGTGAAACAACTTGTGAACCAAATAATACAGAAGATGATCAGAAATTCCTCTTTTCCATGCTAGGGATTGAGAGAAACTTAAAAAATGAAATCCATGATGATATCAAGCTtgAACCAAGAGTTGATAATGATAGTTGCTGGGATGCTGATGATGACAGTATCTTACTACACATTAAGGAAAAGAAAAgtttattagGATTTGAAGAAGACAAGTCAAAAAAGAAGAGAGGCCGGAAGAAAAAAGTGTCGCTTGAAGGTGAAGTTGCCGTTCCTGAAAGCAAGCTGCCTCACCAATGCGACATTTGTGGCAAGTTCCTCAGCACCAAGTCGAATCTCAAAGCTCACAAAATCTGCCACACGGAGTTGCGGCCTTACCGCTGCCCGGAGTGCCCCGCCGCTTTTAGAGGGCACAGTGCCTTGTTTCAGCATAGAAAAGTACACACCCGCGAGACGCCATACCACTGCGAATACTGTCCCAAACAATTCAGTCGGCGGACCGGTCTAGTCAATCACATCAGAATACATACAGGAGAGAAGTTGTACCGATGCGATATCTGTTTTAAAACATTTGTACAAAGTGCACAACTGTCTATACACATGAAGCGACATAAGGGGGACAAGCCTTTCCTCTGCCAGGACTGCGGCAAAGGGTTCCCTATAAAAGCTGATCTAAATGTACACCAGCGAATTCACAACGGTGAGAAGCCGTACGCCTGCCATCTATGCACCAAGACTTTCGCCACCTCAGGGAACCTCAACATTCACGTGCGGATACACAATAAGGAAATCAGGTACAAGTGTAAAGAATGTCAGCGAGGGTTCGTCACGTGTAGCGCGTACAACGTGCACTTGAAGCGGCATAAGGGGCAACGCGACTACCTCTGCGAGTGCGGCAAGACTTTCTACACCTCGTCGGCTCTCAAACAGCATAAAGTCGTCCATACAGGCGAAAAGAAGTATCAGTGCAAGATATGCGAGCGCAAGTTCACACAGACGAGCCACCTAAACCGGCACTTTAAGCGCGAGCATGCCAAACCGAACGCGCCCGTGCCCACAAGCGAGCAGTACAAGCGAGTGCTGCACGACGGCGTCTACAAAGACGCCTTCGCCGTGCAACTTCACAAGCAACACGCGCCAGTCAAGTGTGAGGGATCCTAG
Protein Sequence: MDLSRICRLCLEMHTQTYDIFTQYYVKRNCFYSDMLSQCTKLKPCLGDGLPRLICKECSRHLKRTYSFNKQCEESDQKLRLQIESGTHIVNITKVDTSEVNDVTNSEQQEMKFEQQVEVKGETTCEPNNTEDDQKFLFSMLGIERNLKNEIHDDIKLEPRVDNDSCWDADDDSILLHIKEKKSLLGFEEDKSKKKRGRKKKVSLEGEVAVPESKLPHQCDICGKFLSTKSNLKAHKICHTELRPYRCPECPAAFRGHSALFQHRKVHTRETPYHCEYCPKQFSRRTGLVNHIRIHTGEKLYRCDICFKTFVQSAQLSIHMKRHKGDKPFLCQDCGKGFPIKADLNVHQRIHNGEKPYACHLCTKTFATSGNLNIHVRIHNKEIRYKCKECQRGFVTCSAYNVHLKRHKGQRDYLCECGKTFYTSSALKQHKVVHTGEKKYQCKICERKFTQTSHLNRHFKREHAKPNAPVPTSEQYKRVLHDGVYKDAFAVQLHKQHAPVKCEGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00844633;
90% Identity: iTF_00844633;
80% Identity: -