Tabs033236.1
Basic Information
- Insect
- Tuta absoluta
- Gene Symbol
- -
- Assembly
- GCA_029230345.1
- Location
- CM055310.1:6409561-6412774[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.13 12 7.6 2.1 1 23 66 89 66 89 0.93 2 18 0.4 39 6.0 0.2 2 23 116 138 115 138 0.93 3 18 0.017 1.7 10.3 0.2 2 23 161 182 160 182 0.97 4 18 0.00013 0.012 17.0 0.3 1 23 186 208 186 208 0.98 5 18 0.00018 0.018 16.5 1.0 1 23 217 240 217 240 0.98 6 18 0.019 1.8 10.2 0.4 3 23 247 268 246 268 0.90 7 18 0.0001 0.01 17.3 2.7 2 23 276 297 276 298 0.95 8 18 0.013 1.2 10.7 1.7 1 23 304 326 304 326 0.95 9 18 0.031 3.1 9.5 2.9 1 23 465 488 465 488 0.94 10 18 0.12 11 7.7 0.1 2 23 515 537 514 537 0.93 11 18 0.054 5.3 8.8 0.2 2 23 560 581 559 581 0.97 12 18 7.2e-05 0.0071 17.8 0.2 1 23 585 607 585 607 0.98 13 18 0.00026 0.026 16.0 0.5 1 23 616 639 616 639 0.98 14 18 0.017 1.7 10.3 0.5 3 23 646 667 645 667 0.90 15 18 1.1e-05 0.001 20.4 2.9 2 23 675 696 675 697 0.95 16 18 0.024 2.3 9.9 1.6 1 23 703 725 703 725 0.96 17 18 0.0003 0.029 15.9 1.4 1 23 731 753 731 753 0.98 18 18 0.00095 0.092 14.3 6.3 1 23 759 782 759 782 0.98
Sequence Information
- Coding Sequence
- ATGCCACCAAAAGATAAAATACGTATCACATTTAATGAAGCTCGAGATCTCTATCCTATAATAAAATGGAAAACAACGAAGGGTTTGAAATGTCCCAGACTGAAAAAACTTGACGAATTAGACAAGCATCGCGCAAACATTCGAGAAGTTTTACTCTGCTCTAACGCAACGCCTATTAGAAAAGGAGGTGTAAGCTATAATTGTTGCTTCTGTAAAACTCAATACAATAATCCCCAGGAGTTAAAAGAACACAACCTAGTAGGTCATGATGACAAAGAACGACGTCTTTTTATGAAACGTGCTGATACCCACAATTATGCAGTGAAACTAGACATCACCTCTTTAGAATGCAAATTGTGTAGCAACAGCATTAACAGCCTGGAAGATCTTTTGAATCACTTGAAAGATGATCACAACAGAAGCATACATATGGACATCAACAATCACATCATTCCATTCAAATTACCAGACGAGAAACTAAAATGTGCTATATGTTTGAAAGACTTTCCCGTGTTCAAAAGTTTACTGGAGCATATGTATACGCATTACAGAAATTTTATTTGCGAGTCTTGTTCGGCCGTATTCATCAATAAAGCAAAGCTTTCCATGCACATGCGGACCCATAAAGAAGCTGTGACTAATGATGTTTTTAAATGCTCGACATGTCCTAAAACATTTCCATCCTTTATACGACTAAATAACCATGTTAAAACGGTGCATTCTAAACCCAAAGTTGCATGCACTTACTGCAATGAGTCTTTTGATAACTATAAATTGCGTTTAAAGCATATGGTGGCGGATCACGGAGTCAAGATACGGGAGCGAAAATGTAACTCATGCGAGAGGTCCTTTAATACAGCAGGGGATTTGAGTAAACACGTCAGAAGACATCATCTGCTAGAGCGATCCCATGCGTGTGAATACTGTGACATGAAGTTTTTCTCTAAAAAAGAAGTTGTCAACCACACGGTAACGCATACCGGTGTAAAAGACTTTGAGTGTACTTTGGTGTACCAAATAACTACAGAGAGCGAGCCTGTGGAAAGTAAGTTCCTTCCAACCAAACAAAGCTGCAGTACTCGCAAATTAAAAACAGACAGCAGTAGGAAAAAGAAAGCTACGTATAGTCTTAAGAAGGCAACAATTACGGATAGTCTAAAGGAAAAAACCATTAAAATCGTATCTAAAACCAACGAAAAGCAACCAAAAGGAAAAATACGTATCACATTTAATGAACCTCGAGATCTCCATCATATAATAAAATGGAAAACAACGAAAGGTTTAAAACGTCTTGGACTGAATAAACTTGACGAATTAGACAAGCATCGCGAAAACATTCGAGAAGTTTTACTCTGCTCTAATGCAACGCCTATAAGAAGAGGGGGTATTAGCTATAGTTGTTGCTTTTGTAAAACTCAATACAATAACCCCCAAGATCTGAAAAAACACAACCTGGTAGCTCATGATGAAAATGAACGTCGCCTTTTTATGCAATCTGCCGTAAGCAACGATTATGTAGTGAAACTAGACATCACCTCCTTGATATGCAAATTGTGTGGCAACAGTATTAGCAGCCTGGAAGATTTTTTGAATCACTTGAAAGATGATCACAATAGAAGCATTCATATGGATATCAACAATCACATCATTCCATTCAAATTACCAGACGAGAAACTAAAATGTGCTATATGTTTTATAGAGTATCCCGTGTTCAAAAGTCTACAGGAGCATATGTATACGCATTACAGAAATTTTATTTGCGAGTCTTGTTCGGCTGTATTCATCAATAAAGGAAAGCTTTCCGTTCACATGCGAACCCATAAAGAAGCTGTGACTAAAGATGTTTTTAAATGCTTGACATGTCCTAAAACATTTCCTTCCTTGATACGCCTAAATAACCATGTTAAAACAGTGCATACCAAACCTAAAGTTGCATGTAGCTACTGCAACGAGTCTTTTGATAACTACAAATTGCGTTTCAAACATATGGTGGCCGATCACGGAGTCAAGATACGGGAGCGAAAATGTAACTCATGCGAGAAGTCCTTTAATACAGCAGGGAATTTAAGTAATCACATCAGAAGACATCATTTGTCAGAGCGATCCCACGCATGTCAATATTGTGCCATGAAGTTTTTCTCCCGAAAAGAACTAGACGATCACATGGTCACGCATACCGGTGTGAAAGACTTCGAGTGTGCGTTTTGTCGCAAACGCTACGGCAGAAAAAAGACATTAATAGAACACATGAAGATTCATATGAACGACCGTCGTTTTAAATGTAGACATTGCGGGATGAAGTTTGTGCAGAACTGTAGTTTGAAAGGGCATTTACGATCGAAACATGGTGAAGAAAGGATTCAGTAA
- Protein Sequence
- MPPKDKIRITFNEARDLYPIIKWKTTKGLKCPRLKKLDELDKHRANIREVLLCSNATPIRKGGVSYNCCFCKTQYNNPQELKEHNLVGHDDKERRLFMKRADTHNYAVKLDITSLECKLCSNSINSLEDLLNHLKDDHNRSIHMDINNHIIPFKLPDEKLKCAICLKDFPVFKSLLEHMYTHYRNFICESCSAVFINKAKLSMHMRTHKEAVTNDVFKCSTCPKTFPSFIRLNNHVKTVHSKPKVACTYCNESFDNYKLRLKHMVADHGVKIRERKCNSCERSFNTAGDLSKHVRRHHLLERSHACEYCDMKFFSKKEVVNHTVTHTGVKDFECTLVYQITTESEPVESKFLPTKQSCSTRKLKTDSSRKKKATYSLKKATITDSLKEKTIKIVSKTNEKQPKGKIRITFNEPRDLHHIIKWKTTKGLKRLGLNKLDELDKHRENIREVLLCSNATPIRRGGISYSCCFCKTQYNNPQDLKKHNLVAHDENERRLFMQSAVSNDYVVKLDITSLICKLCGNSISSLEDFLNHLKDDHNRSIHMDINNHIIPFKLPDEKLKCAICFIEYPVFKSLQEHMYTHYRNFICESCSAVFINKGKLSVHMRTHKEAVTKDVFKCLTCPKTFPSLIRLNNHVKTVHTKPKVACSYCNESFDNYKLRFKHMVADHGVKIRERKCNSCEKSFNTAGNLSNHIRRHHLSERSHACQYCAMKFFSRKELDDHMVTHTGVKDFECAFCRKRYGRKKTLIEHMKIHMNDRRFKCRHCGMKFVQNCSLKGHLRSKHGEERIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -