Tabs033229.1
Basic Information
- Insect
- Tuta absoluta
- Gene Symbol
- -
- Assembly
- GCA_029230345.1
- Location
- CM055310.1:6364655-6372186[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 0.049 4.8 8.9 0.9 3 23 83 103 81 103 0.96 2 28 0.055 5.3 8.8 0.2 2 23 129 151 128 151 0.94 3 28 0.16 15 7.3 8.7 2 23 174 195 173 195 0.96 4 28 0.0027 0.27 12.8 0.1 1 23 199 221 199 221 0.97 5 28 0.082 7.9 8.2 2.3 2 23 227 249 226 249 0.91 6 28 0.11 11 7.8 1.1 2 23 257 279 256 279 0.92 7 28 0.025 2.4 9.8 5.0 1 23 286 309 286 309 0.97 8 28 0.013 1.2 10.8 1.2 1 23 315 337 315 337 0.95 9 28 2.2e-05 0.0022 19.4 6.4 1 23 343 365 343 365 0.98 10 28 2.5 2.5e+02 3.5 0.4 3 21 450 468 448 471 0.89 11 28 0.1 10 7.9 0.4 2 23 498 520 497 520 0.94 12 28 0.005 0.49 12.0 0.1 1 23 568 590 568 590 0.97 13 28 0.02 1.9 10.2 0.5 2 23 596 618 595 618 0.88 14 28 0.044 4.3 9.1 2.3 2 23 626 648 625 648 0.96 15 28 0.13 13 7.5 1.0 2 23 656 678 655 678 0.96 16 28 0.00026 0.025 16.1 1.4 1 23 684 706 684 706 0.98 17 28 1.1e-05 0.0011 20.4 1.9 1 23 712 734 712 734 0.99 18 28 2e-05 0.0019 19.6 8.1 1 23 740 763 740 763 0.96 19 28 3.2 3.1e+02 3.2 1.8 3 21 838 856 836 859 0.88 20 28 2.4 2.4e+02 3.6 0.5 3 23 968 989 966 989 0.89 21 28 0.093 9 8.0 0.0 2 23 1015 1037 1014 1037 0.95 22 28 3.4 3.3e+02 3.1 3.7 2 23 1060 1081 1059 1081 0.96 23 28 0.0011 0.1 14.2 0.1 1 23 1085 1107 1085 1107 0.97 24 28 0.0073 0.71 11.5 0.8 1 23 1112 1135 1112 1135 0.93 25 28 0.18 18 7.1 0.2 2 23 1143 1165 1143 1165 0.90 26 28 0.16 16 7.3 7.4 1 23 1171 1194 1171 1194 0.98 27 28 0.0013 0.13 13.8 1.8 1 20 1200 1219 1200 1222 0.92 28 28 1.8e-05 0.0018 19.7 3.9 1 23 1228 1251 1228 1251 0.98
Sequence Information
- Coding Sequence
- ATGGTTCGCCACATGCgTAAACGACGAGAACACGGTGAAAACGCATCTGAAAGAGAGGTTAAGTTTGAGGAAGTAAATGTCAAATTTGAGACTAAAGATGATGTAAACGCATGTGTACCGGTAAACAGAGAAAAAAAGATACCCAACGCAAATTTAGAATTGCAGAGTTGGCGAGTGGCCGTGAGGAGCGTGCTGGCCAGCTCCAACGCCACGGTGATACGGAACCACACTGATAAAGGCTATGGGTGTTGCTTTTGCCGCGAACAGTTTCCAGACCCTGCTGAATTAAAAACACATTATGATAAACACACGGCTGACATCGCTAAATTCAAAGGTGTCAAGGAACAATCAAAATTCTTTGTCAAAATGGatataacaaacttaaaatgCAATTTCTGTGAACAAAGCTTTAACTCAATCGACGAAATTTTAACGCATCTAAACGAAGTTCATAGTAAAAATATACTGCCTGAAGTTAAAACACTAATTTTACCATTCAAATTCGATTGTAACGAGTTGCGATGCTGTGAATGCTCACAGACGTTCCACACATTCCAGAATCTGCAATCTCACATGCACTCTCATTACAGCAATTATATTTGTGATGTTTGCTCTGCTGGTTTTGTTACTAAGAAATCGCTTCTAGTCCATAGAGCTTCCCACGAGACAGGCTCCGTCAAATGCAATTTTTGCTCAAAAGTCTTCGACTCCCAACATAAAGCCAAACAGCACGAATCGTACGTCCATAAAGAGACCGTTCCTAGATCTGTATGCAGATTTTGCAATGAACGTTTCAAAAGGTACACCGCTAAACAGAAACATTTGGAGGAAGTACATGGCGTAGCCCCTATGAGCTTCAAATGTCTTGCATGTGACAAGTTGTTTGCCAGAAAACACCTATTGCATGCGCATACGAAGCGGTTCCATTTGATGCTGAGGCCGCATAAGTGTATAGAATGTGGTATGGGCTTCTTCTCTTCCTCAGAGATGAATCAACACATGGTAAAGCATACTTTACAGAGGAAGTACCATTGTCAGATATGTCCCAAGTCGTTTTGCCATAGAGCAGCTCTAAACCGGCACAGGAGAGTGCATAATGACGATTTACGCTTTAAATGTAAAGAACGAGCATTCACTGAAAAGACAACTGAAACTAAGATTGAGTTTGAGGAAGTAACTGTCAAAACTGAAATCAGGGGTGACGTTGATGCACCAGTAgtggtaaaaagaaaaaaaaaggtacCCGATAGAAATTTAGAATTGCAGAGCTGGCGTGTGGCTGTAAGGAGTTTGCTAGCCAGTACCAACGCCACCACGATAAGGAACCACAACGATAAAGGCTATGGATGCTCCTTCTGCCGCGAACAGTTCCAAGCCCCTGCTGAACTGAAGAAACACAGTTCTGATACACATACTGCTGCCGAAATTGCTAAATTCAAAGGCGTTAAAGAACAATCTAAATTCTTCGTAAAAATGGACATAACAAACTTGAAATGTaaattatgtaaacaaagttaCAACTCAATCGAACAAATTATAACGCACCTGAACGAAATGCATAGTAGAAATGTATTACCGGATATTAAGAAACGAATTTTGCCATTCAAATTCGACAGTAACGCGCTTCGATGCTGCGAATGCTTAGAGACATTCCATGCATTTCATAAATTACAAGCACACATGCATTCTCATTACAGCAATTTTATCTGTGACATTTGCTCTGCCGGTTTCGTTACTCTGAAAACACTCCTAGTGCACAGAGCTACACACGAGACCGCATCTGTCAAATGTAGTTATTGCTCAAAAGTCTTCGACTCCCAAAATAAAGCGAAACAGCACGAATCTGCCATCCATAAAAAGTGTGCCCCGAAATCCGTGTGCAGATTTTGCAATGAACGCTTCAAAACGTACAATGAAAAACAGAAACATTTACAAAAGGTGCACGGCGTAGCGCCAATAAGTATCAAATGTCCTGCATGTGACAAATGGTTTGCCGGGAAGCACTTATTGCTTACTCACACTAAGAGATTTCACTTGATGCTCAGGCCGCATAAATGCACAGCATGTGGCATGGGATTCTTCTCTTCGTCAGAGTTGAACGAGCACATGTCAAAGCATACTATGGAGCGGAAATACCGATGTAAAATCTGCCCTCAGACATTTTACTATAGAGCAGCTCTGAGCCGACATAAACGTACTCATTCTGAAGATTTGCGCTTCAGATGTGACCACTGCAACCACACATTTATTacgaaaagtaatttaaaacgGCACATGTTTAAGAAACACTGTAAACGACGCGTCACCGAAAAGACATCTAAAACGAAAGTTAAGTTTGAGGAAGTAAGTGTCAAAGAGGAAACAAGTGAGGCAGACTTCACAAACAGTGTAATAAAGAAACCCAACGTGAATGCAAATTTAGAATTACAATGTTGGCGAGTGGCCGTGAGGAGTTTATTGGCCAGCTCCAACGCCACGGCGATAAGGAATCACAGTGATAAAGGCTATGGCTGCTGCTTCTGTCGCGAGCAGTTCCAAGACCCTGCTGAGCTCAAAACACACAATTCTGATAAGCATACCACTGACATCGCCAAATTCAAAGGAGTCAAGGAACAATCTAAATTCTTCGTTAAAATGGATATTACTAACTTAAAATGCAACATCTGTGAGAGTGGACGAGGAAAACTTACAAGAAAAAGGCGGACTTTGCAAACTGATATTGAAGACACGACAATAAAAAGTGAATACTGCGAACTTCCACCAGAAAATAGAGGAAAGAAAAGCAACATAGACATGGCTAAATGCTTTTATGATTTGTATAAGCTCAGAACAGCTGTTCGAGAGATATTGTCAAGTTCAAATGCAACAGTATTGCACGGTCACAGTGATAAAGGCTACGGCTGCAGTTTTTGTGGGCAATACTTCTTAAAACCAAATGATCTGAAGCAACACAATCTCCAGCTTCACAGcaaaaacattaaaacattCCTCAAAGGGAAAGAACACTCTAAGTTTTTCGTTAAACTTGACATTACAGATTTACAGTGTAATATTTGCAACCAGAGCATTAGCAACATTGAAGAGGTGATCGATCATTTAAATAGCGatcacaacaaaaaaatacacgtaGATGTAAAGAAGGTAATTTTCCCTTTCAAGTTTCACGGCAACGAGTTGCGATGCTCGGATTGTATGGAATTATTTTACACATTCAAAGCCTTACATGAACACATGCATTCGCATTATAGCAATTATATTTGCGAAGTTTGCTCTGCCGGTTTTGTGACGAAAAGTTCACTTTTGCTGCATTTGACGTCCCACGGAACTGGGTCGTTTCAGTGCTCGCGTTGTCcaaaagttttcgatacaccgcaaaagaagaagaatcacgAAGCGAAAGTACACGACGAGAAGGCTCCTAAAAACGTCTGTAGAATATGCAATGAACGGTTCAAAGAGTACTACGCTAAGGAAAAGCATATAGCAGACGTCCATGGCATCAAGGCGGATTATAGATGTGAGGAGTGCAATAAGACGTATCATTGCAAAGCGCATCTACAAGGTCACATAAAAAAGAACCACTTGATGATGCGTCCGCACAGATGCATGGAATGCGACATGGGCTTCTACACTTCTAACGATTTGAAGAAGCATATGCCGAAACATACGGGCTCGCGAGAATTTAAGTGCACAGTGTGTTCAAAGACTTACGCAAGAAAGACTACCATGAAACAACACATGCGGACAAAACACGGCGTGAACGAATAA
- Protein Sequence
- MVRHMRKRREHGENASEREVKFEEVNVKFETKDDVNACVPVNREKKIPNANLELQSWRVAVRSVLASSNATVIRNHTDKGYGCCFCREQFPDPAELKTHYDKHTADIAKFKGVKEQSKFFVKMDITNLKCNFCEQSFNSIDEILTHLNEVHSKNILPEVKTLILPFKFDCNELRCCECSQTFHTFQNLQSHMHSHYSNYICDVCSAGFVTKKSLLVHRASHETGSVKCNFCSKVFDSQHKAKQHESYVHKETVPRSVCRFCNERFKRYTAKQKHLEEVHGVAPMSFKCLACDKLFARKHLLHAHTKRFHLMLRPHKCIECGMGFFSSSEMNQHMVKHTLQRKYHCQICPKSFCHRAALNRHRRVHNDDLRFKCKERAFTEKTTETKIEFEEVTVKTEIRGDVDAPVVVKRKKKVPDRNLELQSWRVAVRSLLASTNATTIRNHNDKGYGCSFCREQFQAPAELKKHSSDTHTAAEIAKFKGVKEQSKFFVKMDITNLKCKLCKQSYNSIEQIITHLNEMHSRNVLPDIKKRILPFKFDSNALRCCECLETFHAFHKLQAHMHSHYSNFICDICSAGFVTLKTLLVHRATHETASVKCSYCSKVFDSQNKAKQHESAIHKKCAPKSVCRFCNERFKTYNEKQKHLQKVHGVAPISIKCPACDKWFAGKHLLLTHTKRFHLMLRPHKCTACGMGFFSSSELNEHMSKHTMERKYRCKICPQTFYYRAALSRHKRTHSEDLRFRCDHCNHTFITKSNLKRHMFKKHCKRRVTEKTSKTKVKFEEVSVKEETSEADFTNSVIKKPNVNANLELQCWRVAVRSLLASSNATAIRNHSDKGYGCCFCREQFQDPAELKTHNSDKHTTDIAKFKGVKEQSKFFVKMDITNLKCNICESGRGKLTRKRRTLQTDIEDTTIKSEYCELPPENRGKKSNIDMAKCFYDLYKLRTAVREILSSSNATVLHGHSDKGYGCSFCGQYFLKPNDLKQHNLQLHSKNIKTFLKGKEHSKFFVKLDITDLQCNICNQSISNIEEVIDHLNSDHNKKIHVDVKKVIFPFKFHGNELRCSDCMELFYTFKALHEHMHSHYSNYICEVCSAGFVTKSSLLLHLTSHGTGSFQCSRCPKVFDTPQKKKNHEAKVHDEKAPKNVCRICNERFKEYYAKEKHIADVHGIKADYRCEECNKTYHCKAHLQGHIKKNHLMMRPHRCMECDMGFYTSNDLKKHMPKHTGSREFKCTVCSKTYARKTTMKQHMRTKHGVNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -