Tabs033070.1
Basic Information
- Insect
- Tuta absoluta
- Gene Symbol
- -
- Assembly
- GCA_029230345.1
- Location
- CM055310.1:3907720-3920043[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.91 88 4.9 0.5 3 23 91 112 89 112 0.92 2 23 0.0034 0.33 12.5 1.7 1 23 136 158 136 158 0.98 3 23 0.00059 0.058 14.9 0.6 1 23 162 184 162 184 0.96 4 23 0.15 15 7.4 0.0 3 23 191 212 191 212 0.93 5 23 0.003 0.29 12.7 0.3 1 23 218 241 218 241 0.97 6 23 0.0029 0.28 12.8 0.2 1 23 247 272 247 272 0.97 7 23 0.037 3.6 9.3 2.5 1 23 463 485 463 485 0.98 8 23 0.31 30 6.4 0.1 3 23 509 530 507 530 0.91 9 23 0.0019 0.18 13.4 2.5 1 23 554 576 554 576 0.98 10 23 2.9e-05 0.0028 19.1 1.3 1 23 580 602 580 602 0.97 11 23 0.055 5.4 8.7 0.0 3 23 609 630 609 630 0.96 12 23 0.00099 0.097 14.2 1.3 1 23 636 659 636 659 0.96 13 23 8.8 8.6e+02 1.8 0.1 1 12 665 676 665 680 0.92 14 23 0.0043 0.42 12.2 0.8 1 23 771 794 771 794 0.95 15 23 0.043 4.2 9.1 0.0 2 23 817 838 816 838 0.94 16 23 0.013 1.3 10.7 3.2 1 23 860 882 860 882 0.96 17 23 0.0012 0.12 14.0 0.2 1 23 886 908 886 908 0.96 18 23 0.0011 0.11 14.0 0.7 1 23 913 936 913 936 0.95 19 23 0.00065 0.063 14.8 3.3 1 23 942 965 942 965 0.98 20 23 0.2 19 7.0 1.3 1 23 972 995 972 995 0.93 21 23 0.024 2.3 9.9 3.1 1 23 1001 1023 1001 1023 0.93 22 23 1.5e-06 0.00015 23.1 1.0 1 23 1029 1051 1029 1051 0.99 23 23 1.8e-05 0.0017 19.7 1.4 1 23 1057 1079 1057 1080 0.95
Sequence Information
- Coding Sequence
- ATGGAGTCGAAAACAAGTATCAAGTGCAAGAAACTCGTCAGCACTGATCCTTTTTACAACGCCAATCATGCTTATGCCACTTACGTAATAAACAATTCCAACGCCATACCTTTTAAATACTTCCAAGGAaagtacatgtgtatgtattgcaatgttaTGTGTCCGGCCGTAGAACAGCTACGTTGTCACACAAACACACATGACAAATTAAATACTCCTCTCAAAAACAGACTTAAGTTTCCGATTGCAATAGAGATAACGGGGCTCGCCTGCAACATTTGCAACTTGCCAGTCTACAACGTGAACTGCTTGAAGTCGCATCTAGAATACTATCACTCCAAGAAGTCCCCCACTGAAGAAGATGAAGGGGAAAGCGTCGTACCATACATCATAACAGAGAATGGTTACAAGTGCGTCCACTGTGAAGAATCTTTTATAACCTTCGGGAGTTTGCTGTTGCATTCAAACAAGCATTACCAAAACCACGTTTGTGACATCTGCGGCACAGGGTTTCCGAGTCAACGGAGGCTTAGGCAGCATAAAGAGATTCATGAAGAAGATAACCGTGGGTGTCCTAAATGTGGCGAGGTGCTGCCTACGAAAGCGGCCCGGCTTCGGCACATAGTCTATGCTCATGGCCCGAAGAAAAGATACAAATGTCCGTTATGCGACATCGCGTTTGAATCATATTACAAGAGAGTGTTGCATATGAATAGCGAGCACGATCAGAAGATTGAATATCCTTGCAAAGATAAGGAATGCCCGCTGGTGTTTGTGACCGCCTCGTTGCGTAGCAGGCACTACAGGCGTgcgcatttaaaaataaaagatatcaAAAAGAAGAAACAAAAGAACGCTACTGCAACCCAGTTGCATCAACAGCAACCACAATCAACTTCTGGACACGGGCCTTCCTCCATGGGGGGGTACTTGCCATACCCACCAAGCTTGcaaACATTCGTTTCAGACTTAAGAATATTTTCGTTGGACGTAGCAGAGATCTCTCAAGAGGTTTGTGAAATATCTCAAAGCAATGTCTTTTTCTTTTTAGGCTTCCTCGTCCAAGATCAAGGATCATCCAATGAAGTATTAGTCTTAAAAGAAGCTGAAGCTGCTATTGGACAGCCTTCGAAGGATACGGCAATCATTAAAGTAACTTGGAAGAAAAAGAGTAGAGATTTTGCAGATAAAAAGAGCGTTGAAACGAAGCCATCTAGGAAAACACTTATAGTTCTAAAGAAAGACCCATCATTAGAGGAAGAACAGTCGGAATCTAAATTAAATATAAGTTGGAAGAAAGTATGTAAAACAAAAGCTAACCAAGCCAATGCCTCGTTTATTCTAGAACATTCCAACGCCATACCGTTTAAATATAATCGCGGGAAGTTCATGTGTGCGTATTGCGATTTTATTTGTCCGACCATGAAACAGCTACGTTCCCATTCCAACACTCATGATAAATTGACTAATCTTTTCAAAAAAGGCATTCTATTTCCTCTTAGAATAGAGATAACAGACCTGACTTGCATTATTTGTGATTTGAGAGTCAACAGCGTTGATAATTTAAAGGTTCATCTAGAACGCGATCATTCCAAAAAACCACCATCCGAAGAAGACGAAGAAGGGAGCATCGTACCTTTCATTCTAACAAAAAACGAATTCAAATGCGTTCACTGCGAAGAATCGTTTATTACCTTCATGAATTTACTCTTACATACAAACAAGCATTACCAGAACCACGTCTGCGATGTCTGCGGCAAAGGATTTGCAAACTATCAGAAACTTCAGCGGCACAAAATGATGCACGAAGACGAGAATTGTGGATGTCCCAAATGTGGCGAGGTACTGCCTACGAGGGCAGCTCGCATGCGCCACATCGCCGTGGTTCATGGTCCAAAGAACAGATACAGGTGTCCGATATGCGATGCAACATTCAGTTCGTATCACATGAGATTGAGGCATCTAGACCGAGAGCATGGTCAAAAGTCGGAATATCCATGTGGACAATGTTCGGCGGTATTTTCAACCGgGACGGTGTTACTAAAATGGAAACCGAAGAAAAAGTATCTAGACCAAAGGGggAGAAAATTGGAAGCCTTACGGACTCCGATACCGATAAAGAAAGAGCTGGATTTAGAAACTGCATCAGAAATGGAGATTCAAACTCGGATACTCGTTAAGAGAGAAATGGATTCAGACATTGCAAGCGCAAGGGTACAAGGGTTTGAAAGAAGAGCGATATTCAGAAACAACATATCTATAATCATAGATACATGTACAGCATATCCCTTCAAGTACCGGAAAGGAATATACCTATGCTATTTTTGCAATGAGACATTCATAGAACCTGAAAAACTAAGAGAGCATACGAAGACCCAACATGTAGACATGACGGCTGCAATAAAACCGCGCAAGTACGAACCAATAAAGATGGATTTAGCTGGAACTGAATGCAAGATTTGCGGATTAGGCATAACAGATTACCCGTCCCTAAAAGCACATTTAGTAAATCATGGGAAATCTATCGACACAACACACGGAGAAAGTATCTTGCCGTACAAGCTGAGCAAAGAAGAGCACATCTGTCAAATTTGTGGTAAAAGATATGAAATGTTTCTAAGCCTTCACAGACATATGAACGACCACTACGAGCACTATCTGTGTGAAACTTGTGGGAAACCTTTTGCGACACCCCAGAGGATGCTCAATCACGCCAAAACTCATGAAAGAGGAAATTTTCCGTGCAAACATTGCCAAGAACCTTTTCCGTCATATGCCTCGTTGCACGCCCATGTCGCAAAGGTCCACAGATCTAACAAAAGATACAAGTGTCCGATTTGTGATGAAAAATTCCAATCGTACAAGCACAGGCTTAAGCATTTGAAGACAGTGCATGGAGAGAAAACGGCGTTATATCCATGCCCATCTTGTCCTAAGATATTTGACCTCTGCAGCAGACGGACGGCGCATATAAAATTTCAGCATTTGCAAGAACGAAATCACATCTGTTCTGTGTGCGGGATGAAGTTCTTCACCAACTACGAATTGCATGAGCACTCGGTGAAGCATGGCGGCGAGAGGATCTACCAATGCGACGTTTGCAAGAAGTCCTACGCCAGACTGAAGACTCTCAGGGAGCACATGAGGATACACAATAATGACAGGAGGTTCATTTGCCCTGTTTGTGGACAAGCCTTTATACAAAACTGCAGTTTAAAACAACACGCTAGAGTCCATCATCCgatgcatttaaaaaatgacgTGAATTATGCATAA
- Protein Sequence
- MESKTSIKCKKLVSTDPFYNANHAYATYVINNSNAIPFKYFQGKYMCMYCNVMCPAVEQLRCHTNTHDKLNTPLKNRLKFPIAIEITGLACNICNLPVYNVNCLKSHLEYYHSKKSPTEEDEGESVVPYIITENGYKCVHCEESFITFGSLLLHSNKHYQNHVCDICGTGFPSQRRLRQHKEIHEEDNRGCPKCGEVLPTKAARLRHIVYAHGPKKRYKCPLCDIAFESYYKRVLHMNSEHDQKIEYPCKDKECPLVFVTASLRSRHYRRAHLKIKDIKKKKQKNATATQLHQQQPQSTSGHGPSSMGGYLPYPPSLQTFVSDLRIFSLDVAEISQEVCEISQSNVFFFLGFLVQDQGSSNEVLVLKEAEAAIGQPSKDTAIIKVTWKKKSRDFADKKSVETKPSRKTLIVLKKDPSLEEEQSESKLNISWKKVCKTKANQANASFILEHSNAIPFKYNRGKFMCAYCDFICPTMKQLRSHSNTHDKLTNLFKKGILFPLRIEITDLTCIICDLRVNSVDNLKVHLERDHSKKPPSEEDEEGSIVPFILTKNEFKCVHCEESFITFMNLLLHTNKHYQNHVCDVCGKGFANYQKLQRHKMMHEDENCGCPKCGEVLPTRAARMRHIAVVHGPKNRYRCPICDATFSSYHMRLRHLDREHGQKSEYPCGQCSAVFSTGTVLLKWKPKKKYLDQRGRKLEALRTPIPIKKELDLETASEMEIQTRILVKREMDSDIASARVQGFERRAIFRNNISIIIDTCTAYPFKYRKGIYLCYFCNETFIEPEKLREHTKTQHVDMTAAIKPRKYEPIKMDLAGTECKICGLGITDYPSLKAHLVNHGKSIDTTHGESILPYKLSKEEHICQICGKRYEMFLSLHRHMNDHYEHYLCETCGKPFATPQRMLNHAKTHERGNFPCKHCQEPFPSYASLHAHVAKVHRSNKRYKCPICDEKFQSYKHRLKHLKTVHGEKTALYPCPSCPKIFDLCSRRTAHIKFQHLQERNHICSVCGMKFFTNYELHEHSVKHGGERIYQCDVCKKSYARLKTLREHMRIHNNDRRFICPVCGQAFIQNCSLKQHARVHHPMHLKNDVNYA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -