Tabs033069.1
Basic Information
- Insect
- Tuta absoluta
- Gene Symbol
- -
- Assembly
- GCA_029230345.1
- Location
- CM055310.1:3896044-3905891[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 34 0.17 17 7.2 0.5 1 21 79 99 79 100 0.95 2 34 3.3 3.2e+02 3.2 2.3 2 23 128 149 128 149 0.94 3 34 0.074 7.2 8.3 1.2 2 23 172 193 171 193 0.96 4 34 0.031 3.1 9.5 0.1 1 23 197 219 197 219 0.95 5 34 0.0083 0.81 11.3 0.2 1 23 224 247 224 247 0.89 6 34 0.024 2.3 9.9 1.0 1 23 253 276 253 276 0.95 7 34 0.02 2 10.1 4.3 1 23 283 306 283 306 0.94 8 34 1.1e-05 0.0011 20.3 1.3 1 23 313 335 313 335 0.97 9 34 0.2 20 7.0 0.4 1 23 407 430 407 430 0.92 10 34 0.061 6 8.6 0.3 2 23 457 479 456 479 0.94 11 34 0.012 1.2 10.8 5.2 1 23 501 523 501 523 0.98 12 34 0.00012 0.012 17.1 2.2 1 23 527 549 527 549 0.97 13 34 5 4.9e+02 2.6 0.0 1 23 554 577 554 577 0.92 14 34 0.007 0.68 11.6 1.3 1 21 583 603 583 606 0.90 15 34 0.055 5.3 8.8 0.5 1 16 613 628 613 630 0.90 16 34 0.11 11 7.8 3.2 1 23 739 761 739 761 0.98 17 34 0.013 1.3 10.7 0.1 2 23 785 807 784 807 0.93 18 34 0.0037 0.36 12.4 2.2 1 23 829 851 829 851 0.98 19 34 0.0067 0.66 11.6 0.2 2 23 856 877 856 877 0.95 20 34 2.3 2.2e+02 3.7 0.0 1 21 882 902 882 905 0.82 21 34 0.05 4.9 8.9 0.3 2 23 915 937 915 937 0.93 22 34 0.014 1.4 10.6 0.1 2 23 1113 1135 1112 1135 0.95 23 34 0.0012 0.12 13.9 4.0 1 23 1159 1181 1159 1181 0.98 24 34 5.6e-05 0.0054 18.2 0.2 2 23 1186 1207 1186 1207 0.95 25 34 0.089 8.6 8.1 0.2 2 23 1213 1235 1212 1235 0.93 26 34 0.0049 0.48 12.1 0.6 1 23 1241 1264 1241 1264 0.97 27 34 0.013 1.3 10.7 2.8 1 21 1270 1290 1270 1291 0.95 28 34 0.073 7.1 8.4 1.5 1 23 1499 1521 1499 1521 0.98 29 34 2.1 2e+02 3.8 0.3 2 23 1544 1566 1543 1566 0.90 30 34 0.0087 0.85 11.3 2.3 1 23 1590 1612 1590 1612 0.98 31 34 0.00049 0.048 15.2 1.0 1 23 1616 1638 1616 1638 0.97 32 34 0.11 10 7.8 0.0 3 23 1645 1666 1645 1666 0.93 33 34 0.0017 0.16 13.5 0.4 1 23 1672 1695 1672 1695 0.96 34 34 0.12 11 7.7 2.7 1 23 1701 1724 1701 1724 0.97
Sequence Information
- Coding Sequence
- ATGAAGAAAATTTACATGCGACTTTTCTATTTTATAGGACTAAGCGGACACAGAGAAATAGAGAATATTGTTATAAAGCAAACTGACTCTGGAGAAGACTACATTGAAGAAGTTGTAGAGAAAAAAGCATACCAGCGGAGTGCAAAAGCAGAAGCGAGGCTTAATACTAAGAAAAACGCAAGCGTGCTTCTAAATTGCTGGGACATTTGCCCATTTCGGTggataaaaaacaaattcaagTGTGCGTACTGTGAAATAGACTTCACCGCATGCAACCTCCTGAGAGAACACGTAAGGTTGTGTGCTCCTCAACACACTATCACAGACATCTACAAAAAGTTCAAAGAAATGTCCATCATAAACGTTGACCTTACAGAAGCGTCTTGCAAGTATTGTAGGGTCACTCTGAAAGATTTCCATCAAATGAGAATACACGTCACAGAACAcggttttaaattaaattccaATCACCCAGACGGAGTGCTGCCTTTCTTCCTCGACAAAAATTCTTGGACTTGCGTTATTTGTCACGAGAAATTTAATAACTTTCTCCGACTCTACGAACATATGAACATACATTACCAACATTACATTTGTGCGATATGCGGCAAAGGATTCATGACCGGAATGAGACTGAGAAAACATTCTGAAGTTCATATATCTGGATCGTTTCCATGCAACGAATGCGGGCGAGTCTTTTCAATGCGAGCTGCAAGGGAGTCCCATAAAGCCAACACACACGCCAAAGGACCGAGATATAAATGCCCGCATTGCGAAATGCGTTTTATTGGCTATTACGATAGAATGAACCATTTAAATGAGGCACATAGGGAAAAAGAAGTCATATACGATTGTCCACATTGCCAATTGTCTTTCAAGACCAGTGGGAAACGCGCCAAACATATTCACAATAAACATTTCCCACCTCAAAGAAGTTTTCAATGCAGCTCCTGCGACTGGTCGTTCAGAAATAGTTATGAACTGAAAAGGCATGTAGTCAAACATACAGgtTCCGCAATAGCGGAAACGGTGGTTACTGTTAGACGTAGGAAGTTAAAGGAAGTTGTAGGTGAACGACAGCTACGTCGGCGGCGTCGCGCGAACAACCAACTGCCAGAGGAATCGGAAAACCGAATCTCGAAAACAATGATGCGACGAAACGCTATGACTCTTCTAGAAAATTCGACCATGTTCGCGTTCAGATGGCAACATAGCATTTTCTACTGTTCATATTGCCAAGAGAAGTTCGTTGACGTCATCCCGTTTAGAGAACATGTGATATCGAAACATTTATATGAACCTCCAACAAAAGTAATATTCGCCAAATTAACTGAAAATAATATGGTAAAAGTGGACATAACTGATCTTAGGTGTCGGATTTGTAATCTCGTTGTTGGTGATATAGACCACCTAAAAAAACATCTAATTAATGAGcaccaaaataaattaaattcggATTACAGTGATGGAATCCTACCTTTTAAACTAGAACAAGATGGATTTCACTGTCAAAACTGCTCTGAGCATTTTTCTAGTTTTGCCAAACTAAACGAGCATATGAACTCTCATTATCGAAATCACGTGTGCGATTTGTGTGGCAAATCGTTCGTGTCCAAATCTAGATTTAGGATGCATGTGCAGTCTCATGAGGTAGGGAGTTTCCCTTGTGGACTGTGTGATGAAGTTCTTGAGACTAGAGCGGCGAGACTCGGTCACAGAATGAAGATTCATCGAAAGGGGGTTAGATACACATGTCCTAGATGTCCTGAAGTATTTACCACGTACCATGCcagaactaaacatttagttgACAAACATGCAGAAAGTAAAAAGGAATATGATTGTGTGACATGTGGAAAAACTTTCGAGACAAGCAgCACCTTCGTCCAAGAGAAGGGAACATCAAATcaggtattattatttgaagacaAAGGAGTTCCTGAACACGAACATGAACCACTTTTGAAAGAATTGCGAAGTGTGGAAGTCTCCTGCGAGAGCGAGGAACTCTCATTAAACAAAGAGAGGGTTGAATGGAAACCAAAAAAGAAGTCGGTCATAATTATAAAGCCACCACTCAAGAAAGAAGAGAAAGAGACACCGAAACCGAAGATCATGTGGAAAATTAATACGAAAAGAACTGCAACTAACAAATACTATCCTCAATTTATTATCCAACATTCAAACGCAATTCCATTTCAATATAGAGGGCAGTTCATGTGTACTTACTGCTATTTCACGTGTTCAGCAATCAAGCAATTACGTTCTCATATCATCACACATGACAAATTGTCACCTACATATTTCAGAGGGAGACGTGAAATTCCACTTAAAATAGACATAACAGAtcttacttgcaaaatttgcaacTTAGGTGTTAAAAGTGTAGACAACTTGAAATCTCATCTACAAGACGTGCATGGCAAGGTTCCCGATAACGAAGATGCAAGGATCGCACCGTTTATTCTAACCAATAAGGAGGAATACGAATGTGTTCACTGTGGAGAGTCCTTTAAATTAGTAAAGAAATTACTTACACACACGAACAAGCACTACCAGCATGAAGTATGCGATAAATGCGGTGCAGGTTTTCCAAACAAGCGGAAACTAGCAACGCATAAGCAGGGACATGACCTCGGCGACTATCCGTGTCCTAAATGTGGCGCGGTGTTGCTTACAAGAGTTGCTCTGGTCGAACACTTGTATGACGAACATGACGATGGCCCGAGCAAAAACAAGCCCAAATGCAACATATGCAATGAGAAATTCATTTCGTTTTATTATAGAGCGAAGCATATTGCCGAAGAGCATGGTCTTGAAGGTCCATCcaaaagcATCTCCGACCAAGAGCAAGGACCATCATTTCAAGTAGTAATAACAAAAGAAGAAGCTGCCCCTGAACATGAACAACTTTCAGAAGAAACCACAACTTATGATGTACCCGTAGTAGGAGTACGTAAGAGCGATGCACCCTCCCTAAACAAACCAAGAAGGATCTCAAAAACAAAGAAGAGGTCAatcataattataacaaaaaagcaACTCAACCCGCCCCCACGCAAGAAAGAGGCGTCaccaaaattaaatataaagtgGAAAACTAAAGCAGACATAGAACCGCCACCCCCCGGGATAAATAAATCTTATCCCAGATTTGTTGTACAACATTCCAATGCAGTTCCGTTTCAATTCACAAGAGGAAAGTTCATGTGTCATTACTGCAAATTCCAATGTGGCACCATGGTACAATTACGTTCCCATTGCATCACGCATGATAAAACATCCCCTTTCAGAGGGAAAACTCAATATCCACTTAGAATAGACATAACAGACCTCACTTGCGACATTTGCAACTTGAGTGTTATCAGTGTAGACAACTTGAAATTGCATCTCCAAAACGAGCACGCTAAAGTTCCTCCACCTGAAAAAGACAATGATTTGAGCGTCCAGCCTTACATTCTAACTACTAAGGAATACAAATGCCTCCACTGTAACGAATCGTTCACCAACTTTGGGACTTTGTTCGTACACACGAGCAAGCATTACCAGAACGAAGTTTGCGGCGTCTGCGGCAAAGGGTTTGCAAACAAAGGGAAACTCAGGCAGCATATGTACCTACACGAAGAAGATAACTGTGCGTGTCCGAAATGTGGCGAGGTGCTGGGTACAAGAGCTCTGCGTATGCGGCACATGGCCTATGTTCATGGCAAGAAGAACAGATACAAATGCCCCTTATGCGACGCTGAATTCACTTCTTATTACATGAGAACGCAGCATTTGGAGAGAGAGCATGGCAGGAAGTCCGAGTACCGTTGCACGCAATGTCCGCTGGTGTTCAGAACTGCCTCGTGCCGAAACAAACACTACAAAAgcGTCCTCGTCCAAGGACAGGGATCACCAAATCAACACCtggtaataaaacaagaaatagaTTATGATCAAGAAGCTGATCCTCTACATCAGCGAACCTCGCAAGAGCTGCTAATCGTCAACCAAAAGAAGAAAATGGCAAAACTCTTCCTAGACAAAAAAGGGATTGAGTGGAAACCAAATCGCAAAAAGtcattcttatttttaaataagccCTCACCACACAAAGACGTCCCCTTAGACGACAAAAAAAGCGTTGAAATAGAAATACCAATCACGAAATCAATAATACCACGCAAAGATGTCGCTTTAGACGGTAAAGGAAGCATCGAAATAGAAATACCAATCACGGAGTCAATAATATCGCACAAAGAGATAGAAATACCAATCACGAAATCAGTAATATCGCATGTCGACAAAAAAAGCGTTGAAATAAAAAGACCCAACACGAAGTCAATTATTGTTATAACAGGAAAAGAGGAGTCTGCAtcaaaacctaaaaaaataagtatcaaGTGTAAGAAGCTTATTAGTACTGACGCTAACTATAATGCTAATCGTACATATGCTAATTTTATTCTAGAAAATTCCAACGCCATTCCGTTTAAATATAGCCGAGGAAAGTATATGTGCATGTATTGCAATACCATGTGTCCAGACATAGAAAAGCTACGTATCCATTCAAACACACATGATAAATTAACTTCCTCTCTCAAGAAGAGACTTATGTTTCCGCTTGCATTGGAGATAACAGGGCTCACTTGCAATATTTGCAATTCGGAAGTTTACAGCTTAGACCGCTTGAAGACGCATCTAGACCTCAATCATTCTAAGAAGTCCCCATCCGAAGAAGACGAAGGCGAAAGCGTCGTACCATACATTAttactgaaaattatttcaaatgCGTTCACTGCGATGAATCTTTTATGACTTTCGGGAGTTTGCTGTTGCATTCAAACAAGCATTACCAAAACCACGTTTGTGACATTTGTGGTAAAGGATTTCCGAGTCAACGGAGGGTTAAGCAACATAGAATGATGCACGAAGAAGAGAATCGTGGGTGTCCTAAATGTGACAAGGTGCTGCCAACAAAGGCGGCTCGAGCGCAGCACATGGTATATGTTCATGGCAAAAAAGACAGATACAAATGCCCTATTTGCGACGCTACGTTCAACTCGTATTACGCTAGAACGATGCATTTAAGTAGCGAGCACGGTCAGAGCACTGAATATCGCTGCAAAGAATGTTCGGAGGTATTTCTATCAGCTTCGTTGCGATGCAATCACTACAGGCGCATCcatttgaaaataaaagatataaaaaagaagaaacagAAGAATCCTGTTTCCTAG
- Protein Sequence
- MKKIYMRLFYFIGLSGHREIENIVIKQTDSGEDYIEEVVEKKAYQRSAKAEARLNTKKNASVLLNCWDICPFRWIKNKFKCAYCEIDFTACNLLREHVRLCAPQHTITDIYKKFKEMSIINVDLTEASCKYCRVTLKDFHQMRIHVTEHGFKLNSNHPDGVLPFFLDKNSWTCVICHEKFNNFLRLYEHMNIHYQHYICAICGKGFMTGMRLRKHSEVHISGSFPCNECGRVFSMRAARESHKANTHAKGPRYKCPHCEMRFIGYYDRMNHLNEAHREKEVIYDCPHCQLSFKTSGKRAKHIHNKHFPPQRSFQCSSCDWSFRNSYELKRHVVKHTGSAIAETVVTVRRRKLKEVVGERQLRRRRRANNQLPEESENRISKTMMRRNAMTLLENSTMFAFRWQHSIFYCSYCQEKFVDVIPFREHVISKHLYEPPTKVIFAKLTENNMVKVDITDLRCRICNLVVGDIDHLKKHLINEHQNKLNSDYSDGILPFKLEQDGFHCQNCSEHFSSFAKLNEHMNSHYRNHVCDLCGKSFVSKSRFRMHVQSHEVGSFPCGLCDEVLETRAARLGHRMKIHRKGVRYTCPRCPEVFTTYHARTKHLVDKHAESKKEYDCVTCGKTFETSSTFVQEKGTSNQVLLFEDKGVPEHEHEPLLKELRSVEVSCESEELSLNKERVEWKPKKKSVIIIKPPLKKEEKETPKPKIMWKINTKRTATNKYYPQFIIQHSNAIPFQYRGQFMCTYCYFTCSAIKQLRSHIITHDKLSPTYFRGRREIPLKIDITDLTCKICNLGVKSVDNLKSHLQDVHGKVPDNEDARIAPFILTNKEEYECVHCGESFKLVKKLLTHTNKHYQHEVCDKCGAGFPNKRKLATHKQGHDLGDYPCPKCGAVLLTRVALVEHLYDEHDDGPSKNKPKCNICNEKFISFYYRAKHIAEEHGLEGPSKSISDQEQGPSFQVVITKEEAAPEHEQLSEETTTYDVPVVGVRKSDAPSLNKPRRISKTKKRSIIIITKKQLNPPPRKKEASPKLNIKWKTKADIEPPPPGINKSYPRFVVQHSNAVPFQFTRGKFMCHYCKFQCGTMVQLRSHCITHDKTSPFRGKTQYPLRIDITDLTCDICNLSVISVDNLKLHLQNEHAKVPPPEKDNDLSVQPYILTTKEYKCLHCNESFTNFGTLFVHTSKHYQNEVCGVCGKGFANKGKLRQHMYLHEEDNCACPKCGEVLGTRALRMRHMAYVHGKKNRYKCPLCDAEFTSYYMRTQHLEREHGRKSEYRCTQCPLVFRTASCRNKHYKSVLVQGQGSPNQHLVIKQEIDYDQEADPLHQRTSQELLIVNQKKKMAKLFLDKKGIEWKPNRKKSFLFLNKPSPHKDVPLDDKKSVEIEIPITKSIIPRKDVALDGKGSIEIEIPITESIISHKEIEIPITKSVISHVDKKSVEIKRPNTKSIIVITGKEESASKPKKISIKCKKLISTDANYNANRTYANFILENSNAIPFKYSRGKYMCMYCNTMCPDIEKLRIHSNTHDKLTSSLKKRLMFPLALEITGLTCNICNSEVYSLDRLKTHLDLNHSKKSPSEEDEGESVVPYIITENYFKCVHCDESFMTFGSLLLHSNKHYQNHVCDICGKGFPSQRRVKQHRMMHEEENRGCPKCDKVLPTKAARAQHMVYVHGKKDRYKCPICDATFNSYYARTMHLSSEHGQSTEYRCKECSEVFLSASLRCNHYRRIHLKIKDIKKKKQKNPVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -